Wall clock time and date at job start Tue Mar 31 2020 17:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21659 * 120.00306 * 359.97438 * 17 16 15 19 19 C 1.46981 * 120.00091 * 180.02562 * 17 16 15 20 20 C 1.35803 * 125.13516 * 179.72215 * 19 17 16 21 21 C 1.46245 * 106.08200 * 179.86071 * 20 19 17 22 22 C 1.39703 * 134.18991 * 180.14550 * 21 20 19 23 23 C 1.36621 * 119.70941 * 180.27832 * 22 21 20 24 24 C 1.50696 * 119.77753 * 179.97438 * 23 22 21 25 25 C 1.38839 * 120.44389 * 359.97438 * 23 22 21 26 26 C 1.37794 * 120.74198 * 0.02562 * 25 23 22 27 27 C 1.39027 * 119.85977 * 359.97438 * 26 25 23 28 28 O 1.34710 * 133.24700 * 180.02562 * 27 26 25 29 29 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 30 30 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 32 32 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 33 33 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 34 34 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 36 36 H 1.08991 * 109.47194 * 179.97438 * 14 12 3 37 37 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 38 38 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 39 39 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 40 40 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 41 41 H 1.08014 * 126.95818 * 359.97438 * 20 19 17 42 42 H 1.08002 * 120.14708 * 0.29077 * 22 21 20 43 43 H 1.09004 * 109.47264 * 89.99859 * 24 23 22 44 44 H 1.09004 * 109.46914 * 209.99222 * 24 23 22 45 45 H 1.09000 * 109.47402 * 329.99429 * 24 23 22 46 46 H 1.07998 * 119.62677 * 180.02562 * 25 23 22 47 47 H 1.08001 * 120.06858 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6590 -0.2041 -2.6244 19 6 6.7884 0.0491 -0.6024 20 6 7.9063 -0.6561 -0.9139 21 6 8.7630 -0.6014 0.2701 22 6 10.0235 -1.1150 0.5846 23 6 10.5605 -0.8827 1.8192 24 6 11.9199 -1.4365 2.1603 25 6 9.8622 -0.1399 2.7617 26 6 8.6177 0.3754 2.4711 27 6 8.0507 0.1523 1.2215 28 8 6.8823 0.5180 0.6595 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3122 5.0279 0.2067 35 1 0.3853 2.7441 -1.6406 36 1 1.4122 2.6307 -3.0896 37 1 0.7445 1.1534 -2.3541 38 1 3.0183 0.2298 -2.2607 39 1 3.7790 1.7183 -2.8724 40 1 4.5728 1.3525 -0.1869 41 1 8.1204 -1.1547 -1.8479 42 1 10.5712 -1.6930 -0.1450 43 1 12.6864 -0.7103 1.8899 44 1 11.9719 -1.6384 3.2302 45 1 12.0846 -2.3615 1.6076 46 1 10.2994 0.0360 3.7334 47 1 8.0843 0.9520 3.2123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157105028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:13 Heat of formation + Delta-G solvation = 6.555544 kcal Electronic energy + Delta-G solvation = -28363.029266 eV Core-core repulsion = 24512.741764 eV Total energy + Delta-G solvation = -3850.287502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49088 -39.28144 -38.29507 -36.96488 -33.96059 -32.84570 -32.37062 -31.87954 -30.95090 -29.66560 -28.33685 -27.20059 -25.82888 -24.06585 -23.40349 -21.89471 -21.65238 -21.48796 -20.22957 -19.38390 -17.92989 -17.50175 -16.90047 -16.33910 -15.76059 -15.32435 -15.13931 -14.85407 -14.62856 -14.22569 -14.08043 -13.83088 -13.81745 -13.46240 -13.21573 -12.96956 -12.75496 -12.44785 -12.41546 -12.01022 -11.96187 -11.81914 -11.62856 -11.45146 -11.32634 -11.08965 -11.04962 -10.83299 -10.55187 -10.29357 -10.27119 -9.98716 -9.89573 -9.60994 -9.53349 -8.71231 -8.56062 -8.51989 -8.27060 -6.76432 -5.88590 -3.31923 0.54126 1.18288 1.85305 2.52346 3.31560 3.36650 3.41489 3.42466 3.50211 3.51697 4.39790 4.43454 4.55687 4.60941 4.88201 5.04491 5.06692 5.23629 5.27252 5.30917 5.33636 5.36048 5.48697 5.69047 5.72061 5.82361 6.01028 6.05383 6.06063 6.11363 6.24682 6.27020 6.33447 6.41485 6.45740 6.47312 6.52981 6.65954 6.68444 6.76191 6.87977 6.96704 7.02611 7.25813 7.48711 7.58846 7.77593 7.94214 8.38011 8.43913 9.14531 9.76779 10.30779 11.18616 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012912 B = 0.003455 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.046027 B = 8101.197645 C = 9430.457479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.258 4.258 5 H 0.067 0.933 6 C 0.008 3.992 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.291 1.291 12 C 0.176 3.824 13 H 0.104 0.896 14 C -0.143 4.143 15 C 0.098 3.902 16 N -0.684 5.684 17 C 0.586 3.414 18 O -0.534 6.534 19 C -0.007 4.007 20 C -0.130 4.130 21 C -0.137 4.137 22 C -0.065 4.065 23 C -0.109 4.109 24 C -0.109 4.109 25 C -0.088 4.088 26 C -0.103 4.103 27 C 0.064 3.936 28 O -0.176 6.176 29 H 0.050 0.950 30 H 0.028 0.972 31 H 0.052 0.948 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.030 0.970 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.418 0.582 41 H 0.168 0.832 42 H 0.128 0.872 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.135 0.865 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.536 -8.456 1.531 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.015 3.985 3 N -0.306 5.306 4 C -0.387 4.387 5 H 0.085 0.915 6 C -0.191 4.191 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.218 1.218 12 C 0.069 3.931 13 H 0.122 0.878 14 C -0.202 4.202 15 C -0.027 4.027 16 N -0.333 5.333 17 C 0.370 3.630 18 O -0.414 6.414 19 C -0.057 4.057 20 C -0.151 4.151 21 C -0.138 4.138 22 C -0.084 4.084 23 C -0.109 4.109 24 C -0.166 4.166 25 C -0.106 4.106 26 C -0.121 4.121 27 C 0.016 3.984 28 O -0.077 6.077 29 H 0.069 0.931 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.256 0.744 41 H 0.186 0.814 42 H 0.146 0.854 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.153 0.847 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 15.245 -8.427 0.873 17.441 hybrid contribution 0.108 0.776 1.085 1.338 sum 15.353 -7.651 1.958 17.265 Atomic orbital electron populations 1.22389 0.99701 0.98384 1.02122 1.20803 0.91997 0.87543 0.98149 1.44028 1.73781 1.09782 1.02961 1.19201 1.42956 0.89265 0.87293 0.91529 1.25027 0.98878 0.97836 0.97409 1.70016 1.42874 1.08493 1.32236 0.86343 0.78494 0.80246 0.82434 1.20218 1.21552 1.21794 1.20539 0.90913 0.96655 0.85034 0.87804 1.22116 1.00468 0.99626 0.98004 1.22289 0.86811 1.00989 0.92636 1.45952 1.16703 1.51237 1.19439 1.16747 0.81027 0.80012 0.85198 1.90837 1.80190 1.51822 1.18549 1.22270 0.98292 1.01383 0.83766 1.22646 0.92094 1.01426 0.98946 1.19905 0.96750 1.02870 0.94269 1.20169 0.92910 0.98950 0.96323 1.19503 0.97476 1.00043 0.93915 1.20743 0.92960 1.00751 1.02142 1.20849 0.93257 0.97036 0.99495 1.20030 0.95876 1.03103 0.93122 1.19772 0.85026 0.98314 0.95299 1.84120 1.34996 1.63659 1.24953 0.93121 0.95332 0.92880 0.94450 0.94538 0.93649 0.89986 0.95080 0.95089 0.92285 0.92133 0.74441 0.81438 0.85392 0.91204 0.91446 0.91525 0.84731 0.84543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 10.02 37.16 0.37 -2.84 16 2 C 0.14 2.85 5.73 -4.04 -0.02 2.83 16 3 N -0.58 -13.08 1.84 -165.67 -0.30 -13.39 16 4 C -0.26 -6.43 9.50 -15.06 -0.14 -6.57 16 5 H 0.07 1.69 7.90 -52.49 -0.41 1.27 16 6 C 0.01 0.20 4.84 -17.43 -0.08 0.12 16 7 N -0.89 -23.55 10.24 55.49 0.57 -22.98 16 8 Si 0.89 20.54 29.59 -169.99 -5.03 15.51 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.18 3.75 1.93 -67.93 -0.13 3.62 16 13 H 0.10 2.52 5.93 -51.93 -0.31 2.22 16 14 C -0.14 -2.90 8.25 37.16 0.31 -2.60 16 15 C 0.10 1.86 4.85 -4.04 -0.02 1.84 16 16 N -0.68 -12.88 5.38 -61.52 -0.33 -13.21 16 17 C 0.59 10.79 7.79 -12.72 -0.10 10.69 16 18 O -0.53 -10.75 16.83 5.23 0.09 -10.67 16 19 C -0.01 -0.11 7.07 -36.91 -0.26 -0.37 16 20 C -0.13 -1.90 10.80 -37.24 -0.40 -2.30 16 21 C -0.14 -1.87 6.38 -105.19 -0.67 -2.54 16 22 C -0.07 -0.71 9.68 -39.62 -0.38 -1.09 16 23 C -0.11 -1.04 5.85 -104.99 -0.61 -1.65 16 24 C -0.11 -0.69 10.00 36.00 0.36 -0.33 16 25 C -0.09 -0.85 9.66 -39.52 -0.38 -1.24 16 26 C -0.10 -1.23 10.07 -39.45 -0.40 -1.63 16 27 C 0.06 0.95 7.41 -38.35 -0.28 0.66 16 28 O -0.18 -2.96 10.28 2.79 0.03 -2.93 16 29 H 0.05 0.99 6.03 -51.93 -0.31 0.68 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.72 6.35 -51.93 -0.33 0.39 16 33 H 0.04 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 35 H 0.08 1.91 7.22 -51.93 -0.37 1.53 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.03 0.58 6.50 -51.93 -0.34 0.25 16 38 H 0.06 1.13 6.76 -51.93 -0.35 0.78 16 39 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 40 H 0.42 8.22 7.79 -40.82 -0.32 7.91 16 41 H 0.17 2.13 8.06 -52.48 -0.42 1.71 16 42 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 45 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 46 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 47 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -28.02 385.30 -8.98 -37.00 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.95 Total: 8.27 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.86 Total: -3.40 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.07 Total: -49.58 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.12 Total: -13.60 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.02 -8.98 -37.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157105028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.556 kcal (2) G-P(sol) polarization free energy of solvation -28.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds