Wall clock time and date at job start Tue Mar 31 2020 17:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47604 * 2 1 4 4 C 1.36943 * 119.99846 * 84.27292 * 3 2 1 5 5 H 1.07999 * 119.99904 * 28.84108 * 4 3 2 6 6 C 1.38809 * 119.99706 * 209.11638 * 4 3 2 7 7 N 1.31618 * 120.00334 * 18.63280 * 6 4 3 8 8 Si 1.86797 * 119.99733 * 198.63168 * 6 4 3 9 9 H 1.48503 * 109.47368 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47160 * 120.00179 * 8 6 4 11 11 H 1.48498 * 109.47041 * 239.99906 * 8 6 4 12 12 C 1.46498 * 120.00095 * 264.27653 * 3 2 1 13 13 H 1.09003 * 109.46860 * 183.52441 * 12 3 2 14 14 C 1.52998 * 109.47430 * 63.52157 * 12 3 2 15 15 C 1.52998 * 109.46760 * 303.51820 * 12 3 2 16 16 N 1.46499 * 109.47758 * 305.00230 * 15 12 3 17 17 C 1.34770 * 120.00144 * 180.02562 * 16 15 12 18 18 O 1.21659 * 120.00306 * 359.97438 * 17 16 15 19 19 C 1.46981 * 120.00091 * 180.02562 * 17 16 15 20 20 C 1.35803 * 125.13516 * 179.72215 * 19 17 16 21 21 C 1.46245 * 106.08200 * 179.86071 * 20 19 17 22 22 C 1.39703 * 134.18991 * 180.14550 * 21 20 19 23 23 C 1.36621 * 119.70941 * 180.27832 * 22 21 20 24 24 C 1.50696 * 119.77753 * 179.97438 * 23 22 21 25 25 C 1.38839 * 120.44389 * 359.97438 * 23 22 21 26 26 C 1.37794 * 120.74198 * 0.02562 * 25 23 22 27 27 C 1.39027 * 119.85977 * 359.97438 * 26 25 23 28 28 O 1.34710 * 133.24700 * 180.02562 * 27 26 25 29 29 H 1.08999 * 109.47057 * 59.99877 * 1 2 3 30 30 H 1.09000 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46770 * 299.99864 * 1 2 3 32 32 H 1.09001 * 109.47350 * 239.99686 * 2 1 3 33 33 H 1.09001 * 109.46755 * 120.00568 * 2 1 3 34 34 H 0.96997 * 119.99939 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.46541 * 59.99998 * 14 12 3 36 36 H 1.08991 * 109.47194 * 179.97438 * 14 12 3 37 37 H 1.09003 * 109.46874 * 300.00271 * 14 12 3 38 38 H 1.09004 * 109.46866 * 65.00698 * 15 12 3 39 39 H 1.09006 * 109.47115 * 184.99975 * 15 12 3 40 40 H 0.97000 * 119.99579 * 359.97438 * 16 15 12 41 41 H 1.08014 * 126.95818 * 359.97438 * 20 19 17 42 42 H 1.08002 * 120.14708 * 0.29077 * 22 21 20 43 43 H 1.09004 * 109.47264 * 89.99859 * 24 23 22 44 44 H 1.09004 * 109.46914 * 209.99222 * 24 23 22 45 45 H 1.09000 * 109.47402 * 329.99429 * 24 23 22 46 46 H 1.07998 * 119.62677 * 180.02562 * 25 23 22 47 47 H 1.08001 * 120.06858 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1351 2.0661 1.1801 5 1 2.3293 1.5312 2.0980 6 6 1.9982 3.4473 1.1972 7 7 1.4075 4.0626 0.1948 8 14 2.6522 4.4327 2.6431 9 1 3.2675 3.5116 3.6322 10 1 3.6735 5.3980 2.1628 11 1 1.5352 5.1720 3.2840 12 6 2.3819 2.0295 -1.2624 13 1 2.7793 3.0239 -1.0588 14 6 1.1418 2.1479 -2.1506 15 6 3.4441 1.1927 -1.9781 16 7 4.5832 0.9789 -1.0820 17 6 5.6458 0.2641 -1.5016 18 8 5.6590 -0.2041 -2.6244 19 6 6.7884 0.0491 -0.6024 20 6 7.9063 -0.6561 -0.9139 21 6 8.7630 -0.6014 0.2701 22 6 10.0235 -1.1150 0.5846 23 6 10.5605 -0.8827 1.8192 24 6 11.9199 -1.4365 2.1603 25 6 9.8622 -0.1399 2.7617 26 6 8.6177 0.3754 2.4711 27 6 8.0507 0.1523 1.2215 28 8 6.8823 0.5180 0.6595 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.3122 5.0279 0.2067 35 1 0.3853 2.7441 -1.6406 36 1 1.4122 2.6307 -3.0896 37 1 0.7445 1.1534 -2.3541 38 1 3.0183 0.2298 -2.2607 39 1 3.7790 1.7183 -2.8724 40 1 4.5728 1.3525 -0.1869 41 1 8.1204 -1.1547 -1.8479 42 1 10.5712 -1.6930 -0.1450 43 1 12.6864 -0.7103 1.8899 44 1 11.9719 -1.6384 3.2302 45 1 12.0846 -2.3615 1.6076 46 1 10.2994 0.0360 3.7334 47 1 8.0843 0.9520 3.2123 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157105028.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:11 Heat of formation + Delta-G solvation = -7.483814 kcal Electronic energy + Delta-G solvation = -28363.638058 eV Core-core repulsion = 24512.741764 eV Total energy + Delta-G solvation = -3850.896294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -43.57225 -40.71275 -39.21569 -38.65182 -35.52250 -33.90981 -33.76494 -33.18645 -32.52127 -30.73767 -30.11832 -28.09763 -27.12366 -25.87284 -24.61579 -23.30652 -22.84383 -22.53658 -21.51308 -21.07239 -19.35972 -18.62243 -18.47804 -17.53608 -17.19159 -16.68119 -16.43959 -16.29034 -15.98701 -15.66302 -15.37835 -15.11511 -14.90599 -14.46591 -14.39744 -14.20255 -14.09037 -14.05637 -13.70756 -13.30003 -13.11210 -13.02996 -12.98327 -12.84692 -12.72065 -12.65734 -12.59680 -12.24115 -12.09840 -11.92240 -11.76886 -11.45336 -11.31790 -11.30324 -11.27918 -10.47437 -10.15678 -9.48683 -9.29852 -8.62162 -7.83778 -5.27337 -0.50786 0.28484 0.77152 1.41127 1.45416 1.51087 1.57946 2.01555 2.15829 2.53418 2.63301 3.31085 3.33888 3.57806 3.62779 3.86029 3.94374 4.02422 4.19022 4.24989 4.38890 4.42653 4.45944 4.49781 4.68842 4.74132 4.80661 4.83157 4.88405 4.88813 4.92408 5.01132 5.06781 5.08579 5.13596 5.16251 5.25751 5.28906 5.30260 5.34280 5.56212 5.58389 5.61344 5.72891 5.74977 5.90834 6.00664 6.44007 6.48117 6.94516 7.22555 7.91633 8.40524 9.21019 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012912 B = 0.003455 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.046027 B = 8101.197645 C = 9430.457479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 N -0.592 5.592 4 C -0.257 4.257 5 H 0.059 0.941 6 C -0.033 4.033 7 N -0.912 5.912 8 Si 0.947 3.053 9 H -0.272 1.272 10 H -0.293 1.293 11 H -0.298 1.298 12 C 0.181 3.819 13 H 0.073 0.927 14 C -0.132 4.132 15 C 0.109 3.891 16 N -0.689 5.689 17 C 0.591 3.409 18 O -0.556 6.556 19 C -0.043 4.043 20 C -0.110 4.110 21 C -0.155 4.155 22 C -0.068 4.068 23 C -0.105 4.105 24 C -0.108 4.108 25 C -0.073 4.073 26 C -0.122 4.122 27 C 0.036 3.964 28 O -0.199 6.199 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.248 0.752 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.413 0.587 41 H 0.183 0.817 42 H 0.153 0.847 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.170 0.830 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.130 -10.089 2.335 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 N -0.314 5.314 4 C -0.387 4.387 5 H 0.077 0.923 6 C -0.230 4.230 7 N -0.557 5.557 8 Si 0.777 3.223 9 H -0.196 1.196 10 H -0.220 1.220 11 H -0.225 1.225 12 C 0.074 3.926 13 H 0.091 0.909 14 C -0.191 4.191 15 C -0.016 4.016 16 N -0.337 5.337 17 C 0.377 3.623 18 O -0.438 6.438 19 C -0.093 4.093 20 C -0.131 4.131 21 C -0.156 4.156 22 C -0.086 4.086 23 C -0.105 4.105 24 C -0.164 4.164 25 C -0.091 4.091 26 C -0.141 4.141 27 C -0.012 4.012 28 O -0.101 6.101 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.201 0.799 42 H 0.170 0.830 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.187 0.813 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 17.847 -10.083 1.678 20.567 hybrid contribution -0.527 1.192 0.929 1.600 sum 17.320 -8.891 2.607 19.642 Atomic orbital electron populations 1.22252 0.98757 0.99905 1.00614 1.20875 0.92654 0.86299 0.98693 1.44112 1.74176 1.10410 1.02659 1.19305 1.41944 0.89534 0.87961 0.92280 1.25524 0.99609 0.98585 0.99265 1.70138 1.44034 1.08072 1.33469 0.85525 0.77460 0.78917 0.80419 1.19631 1.22045 1.22499 1.20397 0.91755 0.95456 0.85007 0.90912 1.21949 0.99123 0.99933 0.98094 1.22076 0.86378 1.00645 0.92467 1.45930 1.17001 1.51666 1.19070 1.16876 0.81126 0.79138 0.85170 1.90804 1.80808 1.52719 1.19477 1.21936 0.98759 1.04240 0.84362 1.22952 0.91223 0.99295 0.99611 1.20098 0.97962 1.03918 0.93628 1.20547 0.91851 0.98620 0.97580 1.19976 0.98685 0.98781 0.93076 1.20827 0.90872 1.01331 1.03396 1.21341 0.91916 0.94989 1.00864 1.20363 0.97065 1.04142 0.92500 1.20323 0.84795 0.99370 0.96673 1.84047 1.36423 1.64585 1.25088 0.93691 0.92256 0.95213 0.93125 0.94711 0.94287 0.93069 0.93405 0.93734 0.91902 0.91507 0.75080 0.79927 0.82970 0.90004 0.89881 0.90467 0.81300 0.83858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.89 10.02 71.98 0.72 -5.17 16 2 C 0.14 5.61 5.73 86.38 0.49 6.11 16 3 N -0.59 -26.88 1.84 -678.05 -1.25 -28.13 16 4 C -0.26 -13.08 9.50 84.03 0.80 -12.28 16 5 H 0.06 3.05 7.90 -2.91 -0.02 3.03 16 6 C -0.03 -1.70 4.84 84.86 0.41 -1.29 16 7 N -0.91 -49.46 10.24 21.65 0.22 -49.24 16 8 Si 0.95 43.18 29.59 68.60 2.03 45.21 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 12 C 0.18 7.84 1.93 44.99 0.09 7.92 16 13 H 0.07 3.65 5.93 -2.39 -0.01 3.64 16 14 C -0.13 -5.37 8.25 71.98 0.59 -4.77 16 15 C 0.11 4.19 4.85 86.38 0.42 4.61 16 16 N -0.69 -26.60 5.38 -466.80 -2.51 -29.11 16 17 C 0.59 22.26 7.79 86.54 0.67 22.93 16 18 O -0.56 -22.60 16.83 -4.22 -0.07 -22.67 16 19 C -0.04 -1.49 7.07 24.00 0.17 -1.32 16 20 C -0.11 -3.18 10.80 23.79 0.26 -2.93 16 21 C -0.16 -4.10 6.38 -20.23 -0.13 -4.23 16 22 C -0.07 -1.30 9.68 22.25 0.22 -1.09 16 23 C -0.11 -1.63 5.85 -20.10 -0.12 -1.75 16 24 C -0.11 -0.88 10.00 71.23 0.71 -0.17 16 25 C -0.07 -1.19 9.66 22.31 0.22 -0.98 16 26 C -0.12 -2.79 10.07 22.35 0.23 -2.57 16 27 C 0.04 1.07 7.41 23.07 0.17 1.24 16 28 O -0.20 -6.94 10.28 -12.94 -0.13 -7.07 16 29 H 0.04 1.73 6.03 -2.39 -0.01 1.72 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.89 6.35 -2.39 -0.02 1.87 16 33 H 0.03 1.39 8.09 -2.39 -0.02 1.38 16 34 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 35 H 0.05 2.41 7.22 -2.39 -0.02 2.39 16 36 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 1.66 6.50 -2.39 -0.02 1.64 16 38 H 0.06 2.36 6.76 -2.38 -0.02 2.35 16 39 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.41 16.91 7.79 -92.71 -0.72 16.18 16 41 H 0.18 4.49 8.06 -2.90 -0.02 4.47 16 42 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 43 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.08 0.47 8.08 -2.39 -0.02 0.45 16 45 H 0.08 0.52 8.08 -2.39 -0.02 0.50 16 46 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 47 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -62.05 385.30 4.47 -57.58 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.26 Total: 29.17 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 5.92 Total: 4.26 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -3.54 Total: -106.48 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.20 Total: -29.75 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -62.05 4.47 -57.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157105028.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.097 kcal (2) G-P(sol) polarization free energy of solvation -62.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds