Wall clock time and date at job start Tue Mar 31 2020 17:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47241 * 2 1 4 4 C 1.46904 * 111.00131 * 301.93703 * 3 2 1 5 5 C 1.50696 * 109.47195 * 288.97810 * 4 3 2 6 6 H 1.08007 * 120.00190 * 4.90985 * 5 4 3 7 7 C 1.37873 * 119.99973 * 184.89816 * 5 4 3 8 8 N 1.31515 * 120.00048 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00039 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46534 * 60.00835 * 9 7 5 11 11 H 1.48501 * 109.47157 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47526 * 300.00773 * 9 7 5 13 13 C 1.46897 * 111.00059 * 65.89086 * 3 2 1 14 14 C 1.50702 * 109.46834 * 72.31343 * 13 3 2 15 15 C 1.41547 * 126.14039 * 263.16965 * 14 13 3 16 16 C 1.40122 * 133.36870 * 0.03928 * 15 14 13 17 17 C 1.36434 * 119.82916 * 179.97438 * 16 15 14 18 18 C 1.38946 * 120.62099 * 0.02562 * 17 16 15 19 19 C 1.37672 * 120.64957 * 359.97323 * 18 17 16 20 20 C 1.39234 * 119.81245 * 359.74601 * 19 18 17 21 21 N 1.37460 * 133.16579 * 179.63401 * 20 19 18 22 22 C 1.46504 * 125.60723 * 0.69571 * 21 20 19 23 23 C 1.35953 * 126.13794 * 83.17295 * 14 13 3 24 24 C 1.46890 * 125.44310 * 359.97252 * 23 14 13 25 25 O 1.21567 * 120.00130 * 0.02562 * 24 23 14 26 26 O 1.34846 * 120.00170 * 179.97438 * 24 23 14 27 27 C 1.45201 * 117.00187 * 179.97438 * 26 24 23 28 28 H 1.09001 * 109.46748 * 305.39798 * 1 2 3 29 29 H 1.08997 * 109.47046 * 65.39293 * 1 2 3 30 30 H 1.08999 * 109.47414 * 185.40034 * 1 2 3 31 31 H 1.09009 * 109.47136 * 240.00286 * 2 1 3 32 32 H 1.09001 * 109.47376 * 120.00653 * 2 1 3 33 33 H 1.08997 * 109.46924 * 48.97675 * 4 3 2 34 34 H 1.09002 * 109.46959 * 168.97912 * 4 3 2 35 35 H 0.96998 * 119.99831 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47520 * 312.31659 * 13 3 2 37 37 H 1.09000 * 109.47605 * 192.31033 * 13 3 2 38 38 H 1.07996 * 120.08734 * 359.97438 * 16 15 14 39 39 H 1.08001 * 119.68872 * 180.02562 * 17 16 15 40 40 H 1.08000 * 119.67806 * 179.97438 * 18 17 16 41 41 H 1.08003 * 120.09230 * 179.97438 * 19 18 17 42 42 H 1.08993 * 109.47362 * 269.69512 * 22 21 20 43 43 H 1.09008 * 109.46718 * 29.69116 * 22 21 20 44 44 H 1.08996 * 109.47304 * 149.68612 * 22 21 20 45 45 H 1.08997 * 109.47363 * 300.00287 * 27 26 24 46 46 H 1.09005 * 109.47119 * 60.00832 * 27 26 24 47 47 H 1.09001 * 109.47422 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5112 2.1232 -1.1639 5 6 2.1859 1.6181 -2.4131 6 1 2.8594 0.7754 -2.3601 7 6 1.9432 2.2315 -3.6238 8 7 1.1233 3.2577 -3.6883 9 14 2.7801 1.6058 -5.1722 10 1 2.3969 0.1899 -5.4043 11 1 2.3557 2.4304 -6.3320 12 1 4.2534 1.6998 -5.0112 13 6 1.6670 2.0680 1.2518 14 6 2.5175 1.5308 2.3739 15 6 2.1443 0.5233 3.2955 16 6 0.9830 -0.2418 3.4666 17 6 0.9182 -1.1611 4.4727 18 6 1.9940 -1.3469 5.3321 19 6 3.1459 -0.6075 5.1846 20 6 3.2387 0.3328 4.1619 21 7 4.2275 1.2050 3.7732 22 6 5.5413 1.3422 4.4068 23 6 3.7808 1.9269 2.6829 24 6 4.5483 2.9575 1.9713 25 8 4.0566 3.5336 1.0204 26 8 5.7981 3.2654 2.3733 27 6 6.4976 4.2931 1.6231 28 1 -0.3633 0.5953 0.8377 29 1 -0.3633 0.4279 -0.9343 30 1 -0.3634 -1.0231 0.0967 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.4347 1.9740 -1.2467 34 1 1.7225 3.1855 -1.0410 35 1 0.9529 3.6895 -4.5400 36 1 0.6151 1.8931 1.4773 37 1 1.8422 3.1384 1.1435 38 1 0.1415 -0.1043 2.8039 39 1 0.0221 -1.7500 4.6023 40 1 1.9261 -2.0785 6.1236 41 1 3.9766 -0.7590 5.8580 42 1 5.4882 2.0937 5.1943 43 1 5.8390 0.3857 4.8368 44 1 6.2743 1.6488 3.6606 45 1 6.5929 3.9822 0.5828 46 1 5.9357 5.2258 1.6736 47 1 7.4895 4.4427 2.0495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232407818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:10 Heat of formation + Delta-G solvation = -6.153459 kcal Electronic energy + Delta-G solvation = -29390.981022 eV Core-core repulsion = 25540.142417 eV Total energy + Delta-G solvation = -3850.838606 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.68278 -39.80362 -37.23229 -36.96305 -36.15500 -33.32735 -32.30594 -30.42709 -29.97933 -29.11822 -28.07333 -27.49397 -25.93231 -24.42615 -23.75465 -22.82917 -21.55005 -21.01704 -19.82818 -18.79774 -17.77641 -16.67873 -16.48932 -16.35936 -16.05160 -15.83026 -15.28417 -14.85202 -14.72351 -14.52253 -14.11628 -13.92894 -13.77097 -13.31110 -13.10136 -13.05114 -12.84399 -12.58720 -12.52900 -12.05183 -11.80815 -11.75406 -11.60743 -11.31938 -11.23075 -11.02878 -10.84280 -10.83333 -10.65936 -10.60557 -10.41112 -10.12765 -9.91695 -9.58067 -9.56219 -9.09097 -8.28115 -8.16980 -7.54907 -6.97939 -5.88237 -3.87379 0.77277 1.64426 2.09864 2.57942 2.85364 3.31228 3.40997 3.44321 3.48024 3.92696 4.54366 4.61077 4.70958 4.83327 4.95923 5.09328 5.12961 5.18446 5.26352 5.28825 5.34834 5.44425 5.48171 5.52401 5.53073 5.65692 5.72071 5.80731 5.93557 5.97727 6.04312 6.21223 6.30878 6.32778 6.40448 6.55990 6.58387 6.63360 6.76051 6.78639 6.81919 7.03080 7.11796 7.25831 7.51668 7.56206 7.95681 7.99369 8.29198 8.44097 8.73278 9.18843 9.74763 11.22552 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.004520 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.195660 B = 6193.679716 C = 8065.568461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.059 3.941 3 N -0.519 5.519 4 C 0.193 3.807 5 C -0.495 4.495 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.108 3.892 14 C -0.037 4.037 15 C -0.115 4.115 16 C -0.049 4.049 17 C -0.158 4.158 18 C -0.088 4.088 19 C -0.137 4.137 20 C 0.118 3.882 21 N -0.467 5.467 22 C 0.079 3.921 23 C 0.037 3.963 24 C 0.521 3.479 25 O -0.450 6.450 26 O -0.370 6.370 27 C 0.038 3.962 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.053 0.947 33 H -0.004 1.004 34 H 0.033 0.967 35 H 0.259 0.741 36 H 0.038 0.962 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.067 0.933 46 H 0.063 0.937 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.488 -4.903 20.557 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.069 4.069 3 N -0.243 5.243 4 C 0.068 3.932 5 C -0.534 4.534 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.020 4.020 14 C -0.046 4.046 15 C -0.120 4.120 16 C -0.067 4.067 17 C -0.177 4.177 18 C -0.107 4.107 19 C -0.157 4.157 20 C 0.008 3.992 21 N -0.150 5.150 22 C -0.062 4.062 23 C -0.069 4.069 24 C 0.363 3.637 25 O -0.332 6.332 26 O -0.288 6.288 27 C -0.056 4.056 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.013 0.987 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.106 0.894 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.087 0.913 43 H 0.097 0.903 44 H 0.115 0.885 45 H 0.086 0.914 46 H 0.082 0.918 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.172 -4.447 20.155 21.851 hybrid contribution -0.200 -0.148 -0.928 0.961 sum 6.971 -4.596 19.227 20.962 Atomic orbital electron populations 1.22409 0.99592 1.00440 1.02254 1.21997 0.91957 0.91878 1.01115 1.62284 1.59336 1.01481 1.01181 1.19785 0.93412 0.93911 0.86097 1.21095 1.25953 1.14972 0.91355 0.92340 1.24936 0.95602 0.95157 0.98888 1.69950 1.36499 1.22081 1.25555 0.86634 0.79929 0.78595 0.82630 1.20422 1.21486 1.20400 1.20653 0.94149 0.99241 0.87976 1.19697 0.92622 0.95697 0.96562 1.18069 0.95108 1.00570 0.98220 1.20493 0.95965 0.93621 0.96641 1.20577 0.99292 1.00716 0.97113 1.20820 0.92590 0.98393 0.98907 1.19965 0.99463 0.97996 0.98316 1.18308 0.88631 0.94461 0.97815 1.43897 1.13352 1.31676 1.26107 1.22077 0.82161 1.02722 0.99227 1.18837 0.94823 0.99736 0.93529 1.19882 0.80008 0.81528 0.82251 1.91048 1.68902 1.48975 1.24321 1.86534 1.28736 1.55760 1.57803 1.23240 0.95816 0.89531 0.97011 0.93578 0.91263 0.93608 0.90735 0.92889 0.98651 0.94844 0.93118 0.94401 0.89385 0.85742 0.86071 0.85875 0.86399 0.91260 0.90306 0.88464 0.91395 0.91833 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 9.04 37.16 0.34 -3.11 16 2 C 0.06 1.20 5.78 -3.83 -0.02 1.18 16 3 N -0.52 -11.85 4.61 -237.52 -1.09 -12.94 16 4 C 0.19 5.20 4.53 -4.98 -0.02 5.18 16 5 C -0.49 -14.43 8.68 -34.44 -0.30 -14.73 16 6 H 0.06 1.71 7.27 -52.48 -0.38 1.33 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.55 13.29 55.43 0.74 -26.82 16 9 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.11 2.16 4.53 -4.98 -0.02 2.14 16 14 C -0.04 -0.66 5.05 -104.18 -0.53 -1.19 16 15 C -0.11 -1.79 5.36 -106.93 -0.57 -2.37 16 16 C -0.05 -0.66 9.59 -39.53 -0.38 -1.04 16 17 C -0.16 -1.77 9.96 -39.97 -0.40 -2.17 16 18 C -0.09 -0.90 10.01 -39.53 -0.40 -1.29 16 19 C -0.14 -1.53 9.98 -39.42 -0.39 -1.92 16 20 C 0.12 1.65 6.81 -83.97 -0.57 1.07 16 21 N -0.47 -6.50 3.22 -117.71 -0.38 -6.88 16 22 C 0.08 0.76 10.49 59.85 0.63 1.39 16 23 C 0.04 0.62 6.81 -82.32 -0.56 0.06 16 24 C 0.52 9.13 7.93 34.23 0.27 9.40 16 25 O -0.45 -9.51 14.52 -19.32 -0.28 -9.79 16 26 O -0.37 -5.11 7.89 -40.89 -0.32 -5.44 16 27 C 0.04 0.42 10.57 101.05 1.07 1.49 16 28 H 0.05 0.78 5.22 -51.93 -0.27 0.51 16 29 H 0.07 1.46 6.44 -51.93 -0.33 1.12 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.64 7.16 -51.92 -0.37 1.27 16 32 H 0.05 1.00 6.26 -51.93 -0.33 0.68 16 33 H 0.00 -0.11 5.83 -51.93 -0.30 -0.42 16 34 H 0.03 1.00 7.74 -51.93 -0.40 0.60 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.04 0.71 5.93 -51.93 -0.31 0.41 16 37 H 0.09 1.90 6.31 -51.93 -0.33 1.58 16 38 H 0.12 1.65 6.97 -52.49 -0.37 1.29 16 39 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.59 8.12 -51.92 -0.42 0.17 16 44 H 0.10 0.96 6.07 -51.93 -0.32 0.64 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -34.09 377.50 -9.28 -43.37 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -6.64 Total: -0.23 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -1.96 Total: -4.41 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.74 Total: -46.64 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.60 Total: -15.22 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.09 -9.28 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232407818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.215 kcal (2) G-P(sol) polarization free energy of solvation -34.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds