Wall clock time and date at job start Tue Mar 31 2020 17:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47241 * 2 1 4 4 C 1.46904 * 111.00131 * 301.93703 * 3 2 1 5 5 C 1.50696 * 109.47195 * 288.97810 * 4 3 2 6 6 H 1.08007 * 120.00190 * 4.90985 * 5 4 3 7 7 C 1.37873 * 119.99973 * 184.89816 * 5 4 3 8 8 N 1.31515 * 120.00048 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00039 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46534 * 60.00835 * 9 7 5 11 11 H 1.48501 * 109.47157 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47526 * 300.00773 * 9 7 5 13 13 C 1.46897 * 111.00059 * 65.89086 * 3 2 1 14 14 C 1.50702 * 109.46834 * 72.31343 * 13 3 2 15 15 C 1.41547 * 126.14039 * 263.16965 * 14 13 3 16 16 C 1.40122 * 133.36870 * 0.03928 * 15 14 13 17 17 C 1.36434 * 119.82916 * 179.97438 * 16 15 14 18 18 C 1.38946 * 120.62099 * 0.02562 * 17 16 15 19 19 C 1.37672 * 120.64957 * 359.97323 * 18 17 16 20 20 C 1.39234 * 119.81245 * 359.74601 * 19 18 17 21 21 N 1.37460 * 133.16579 * 179.63401 * 20 19 18 22 22 C 1.46504 * 125.60723 * 0.69571 * 21 20 19 23 23 C 1.35953 * 126.13794 * 83.17295 * 14 13 3 24 24 C 1.46890 * 125.44310 * 359.97252 * 23 14 13 25 25 O 1.21567 * 120.00130 * 0.02562 * 24 23 14 26 26 O 1.34846 * 120.00170 * 179.97438 * 24 23 14 27 27 C 1.45201 * 117.00187 * 179.97438 * 26 24 23 28 28 H 1.09001 * 109.46748 * 305.39798 * 1 2 3 29 29 H 1.08997 * 109.47046 * 65.39293 * 1 2 3 30 30 H 1.08999 * 109.47414 * 185.40034 * 1 2 3 31 31 H 1.09009 * 109.47136 * 240.00286 * 2 1 3 32 32 H 1.09001 * 109.47376 * 120.00653 * 2 1 3 33 33 H 1.08997 * 109.46924 * 48.97675 * 4 3 2 34 34 H 1.09002 * 109.46959 * 168.97912 * 4 3 2 35 35 H 0.96998 * 119.99831 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47520 * 312.31659 * 13 3 2 37 37 H 1.09000 * 109.47605 * 192.31033 * 13 3 2 38 38 H 1.07996 * 120.08734 * 359.97438 * 16 15 14 39 39 H 1.08001 * 119.68872 * 180.02562 * 17 16 15 40 40 H 1.08000 * 119.67806 * 179.97438 * 18 17 16 41 41 H 1.08003 * 120.09230 * 179.97438 * 19 18 17 42 42 H 1.08993 * 109.47362 * 269.69512 * 22 21 20 43 43 H 1.09008 * 109.46718 * 29.69116 * 22 21 20 44 44 H 1.08996 * 109.47304 * 149.68612 * 22 21 20 45 45 H 1.08997 * 109.47363 * 300.00287 * 27 26 24 46 46 H 1.09005 * 109.47119 * 60.00832 * 27 26 24 47 47 H 1.09001 * 109.47422 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5112 2.1232 -1.1639 5 6 2.1859 1.6181 -2.4131 6 1 2.8594 0.7754 -2.3601 7 6 1.9432 2.2315 -3.6238 8 7 1.1233 3.2577 -3.6883 9 14 2.7801 1.6058 -5.1722 10 1 2.3969 0.1899 -5.4043 11 1 2.3557 2.4304 -6.3320 12 1 4.2534 1.6998 -5.0112 13 6 1.6670 2.0680 1.2518 14 6 2.5175 1.5308 2.3739 15 6 2.1443 0.5233 3.2955 16 6 0.9830 -0.2418 3.4666 17 6 0.9182 -1.1611 4.4727 18 6 1.9940 -1.3469 5.3321 19 6 3.1459 -0.6075 5.1846 20 6 3.2387 0.3328 4.1619 21 7 4.2275 1.2050 3.7732 22 6 5.5413 1.3422 4.4068 23 6 3.7808 1.9269 2.6829 24 6 4.5483 2.9575 1.9713 25 8 4.0566 3.5336 1.0204 26 8 5.7981 3.2654 2.3733 27 6 6.4976 4.2931 1.6231 28 1 -0.3633 0.5953 0.8377 29 1 -0.3633 0.4279 -0.9343 30 1 -0.3634 -1.0231 0.0967 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 0.4347 1.9740 -1.2467 34 1 1.7225 3.1855 -1.0410 35 1 0.9529 3.6895 -4.5400 36 1 0.6151 1.8931 1.4773 37 1 1.8422 3.1384 1.1435 38 1 0.1415 -0.1043 2.8039 39 1 0.0221 -1.7500 4.6023 40 1 1.9261 -2.0785 6.1236 41 1 3.9766 -0.7590 5.8580 42 1 5.4882 2.0937 5.1943 43 1 5.8390 0.3857 4.8368 44 1 6.2743 1.6488 3.6606 45 1 6.5929 3.9822 0.5828 46 1 5.9357 5.2258 1.6736 47 1 7.4895 4.4427 2.0495 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232407818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:09 Heat of formation + Delta-G solvation = -27.063977 kcal Electronic energy + Delta-G solvation = -29391.887770 eV Core-core repulsion = 25540.142417 eV Total energy + Delta-G solvation = -3851.745354 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.79069 -41.05498 -38.92713 -37.92258 -37.50199 -34.93891 -34.08916 -31.42378 -31.28909 -30.47735 -29.75059 -28.51160 -27.46175 -25.76996 -25.10477 -24.66156 -22.51064 -22.18344 -21.42066 -20.16395 -18.93761 -18.35806 -17.68587 -17.60272 -17.58737 -17.02483 -16.80808 -16.46481 -16.14710 -15.80886 -15.52505 -15.02741 -14.82620 -14.75717 -14.57837 -14.30136 -14.11178 -13.76770 -13.72659 -13.39224 -13.28089 -13.10300 -12.94968 -12.84550 -12.72250 -12.54790 -12.45216 -12.41267 -12.13721 -11.84837 -11.83299 -11.80489 -11.63220 -11.39425 -11.23878 -10.62685 -10.54489 -9.19329 -8.84973 -8.58914 -8.14904 -6.24238 -0.34790 0.70659 0.96134 1.37429 1.41884 1.45583 1.49465 1.81354 2.02190 2.41742 2.96918 3.15569 3.53975 3.61572 3.72278 3.82758 4.04397 4.19762 4.27927 4.30204 4.31271 4.32018 4.39233 4.46866 4.48021 4.55293 4.59849 4.66335 4.70365 4.74806 4.80698 4.85415 4.90898 5.01833 5.02613 5.17645 5.23005 5.26635 5.40049 5.49896 5.57695 5.61700 5.68790 5.71928 5.76030 6.09625 6.12894 6.31824 6.51169 6.69417 6.71061 6.90183 7.43457 8.95265 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.004520 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.195660 B = 6193.679716 C = 8065.568461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.065 3.935 3 N -0.530 5.530 4 C 0.214 3.786 5 C -0.513 4.513 6 H 0.054 0.946 7 C 0.001 3.999 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.274 1.274 13 C 0.120 3.880 14 C -0.064 4.064 15 C -0.138 4.138 16 C -0.073 4.073 17 C -0.147 4.147 18 C -0.078 4.078 19 C -0.134 4.134 20 C 0.109 3.891 21 N -0.460 5.460 22 C 0.071 3.929 23 C 0.019 3.981 24 C 0.522 3.478 25 O -0.502 6.502 26 O -0.356 6.356 27 C 0.031 3.969 28 H 0.056 0.944 29 H 0.035 0.965 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.072 0.928 33 H -0.021 1.021 34 H -0.010 1.010 35 H 0.263 0.737 36 H 0.044 0.956 37 H 0.057 0.943 38 H 0.119 0.881 39 H 0.148 0.852 40 H 0.163 0.837 41 H 0.152 0.848 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.050 0.950 46 H 0.059 0.941 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.836 -7.818 23.285 25.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.063 4.063 3 N -0.253 5.253 4 C 0.088 3.912 5 C -0.552 4.552 6 H 0.072 0.928 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.199 1.199 13 C -0.008 4.008 14 C -0.073 4.073 15 C -0.142 4.142 16 C -0.092 4.092 17 C -0.166 4.166 18 C -0.097 4.097 19 C -0.154 4.154 20 C -0.001 4.001 21 N -0.142 5.142 22 C -0.068 4.068 23 C -0.089 4.089 24 C 0.367 3.633 25 O -0.389 6.389 26 O -0.273 6.273 27 C -0.061 4.061 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.090 0.910 33 H -0.003 1.003 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.166 0.834 40 H 0.181 0.819 41 H 0.169 0.831 42 H 0.105 0.895 43 H 0.127 0.873 44 H 0.111 0.889 45 H 0.069 0.931 46 H 0.078 0.922 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.554 -7.385 22.940 25.572 hybrid contribution -0.591 0.725 -1.593 1.847 sum 7.963 -6.660 21.347 23.737 Atomic orbital electron populations 1.22258 0.97919 1.02363 1.00850 1.21944 0.93321 0.90186 1.00875 1.62142 1.59751 1.02433 1.01022 1.19340 0.92270 0.91900 0.87700 1.21363 1.26152 1.15081 0.92588 0.92807 1.25860 0.96111 0.95180 1.02447 1.70092 1.37707 1.23207 1.26593 0.85499 0.78712 0.78591 0.78153 1.19003 1.20560 1.19914 1.20411 0.95181 0.97483 0.87740 1.19496 0.93209 0.97720 0.96864 1.18193 0.96823 1.00728 0.98489 1.20596 0.95446 0.94933 0.98186 1.20969 1.00630 0.99323 0.95704 1.21331 0.91408 0.98059 0.98897 1.20404 1.00927 0.96569 0.97501 1.18682 0.87981 0.95050 0.98381 1.44081 1.14576 1.30651 1.24938 1.22394 0.80048 1.05019 0.99325 1.18795 0.94844 1.00292 0.94956 1.20163 0.80706 0.81006 0.81438 1.91031 1.70177 1.50963 1.26696 1.86544 1.27073 1.56165 1.57496 1.23552 0.97585 0.88514 0.96487 0.92537 0.94567 0.90338 0.92828 0.90956 1.00307 0.99140 0.92857 0.93836 0.92408 0.86331 0.83415 0.81922 0.83082 0.89500 0.87339 0.88939 0.93102 0.92180 0.83693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.57 9.04 71.98 0.65 -5.92 16 2 C 0.06 2.73 5.78 86.30 0.50 3.23 16 3 N -0.53 -25.85 4.61 -905.37 -4.17 -30.03 16 4 C 0.21 12.46 4.53 85.56 0.39 12.85 16 5 C -0.51 -31.45 8.68 25.60 0.22 -31.23 16 6 H 0.05 3.27 7.27 -2.91 -0.02 3.25 16 7 C 0.00 0.08 5.46 84.65 0.46 0.55 16 8 N -0.94 -59.57 13.29 21.45 0.28 -59.28 16 9 Si 0.97 47.09 29.54 68.60 2.03 49.12 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.27 -13.08 7.11 99.48 0.71 -12.38 16 13 C 0.12 5.19 4.53 85.56 0.39 5.58 16 14 C -0.06 -2.36 5.05 -19.58 -0.10 -2.46 16 15 C -0.14 -4.24 5.36 -21.36 -0.11 -4.35 16 16 C -0.07 -1.88 9.59 22.31 0.21 -1.67 16 17 C -0.15 -2.76 9.96 22.02 0.22 -2.54 16 18 C -0.08 -1.19 10.01 22.31 0.22 -0.97 16 19 C -0.13 -2.38 9.98 22.38 0.22 -2.16 16 20 C 0.11 2.81 6.81 39.15 0.27 3.08 16 21 N -0.46 -12.19 3.22 -526.34 -1.70 -13.89 16 22 C 0.07 1.19 10.49 127.77 1.34 2.53 16 23 C 0.02 0.65 6.81 39.88 0.27 0.92 16 24 C 0.52 19.32 7.93 70.09 0.56 19.88 16 25 O -0.50 -23.15 14.52 19.62 0.28 -22.87 16 26 O -0.36 -9.91 7.89 -57.58 -0.45 -10.37 16 27 C 0.03 0.71 10.57 113.37 1.20 1.91 16 28 H 0.06 1.98 5.22 -2.39 -0.01 1.96 16 29 H 0.04 1.58 6.44 -2.39 -0.02 1.57 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.05 2.45 7.16 -2.38 -0.02 2.44 16 32 H 0.07 2.77 6.26 -2.39 -0.01 2.75 16 33 H -0.02 -1.24 5.83 -2.39 -0.01 -1.25 16 34 H -0.01 -0.63 7.74 -2.39 -0.02 -0.65 16 35 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 36 H 0.04 1.77 5.93 -2.39 -0.01 1.76 16 37 H 0.06 2.80 6.31 -2.39 -0.02 2.79 16 38 H 0.12 3.08 6.97 -2.91 -0.02 3.06 16 39 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 40 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 41 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.11 1.16 8.12 -2.38 -0.02 1.14 16 44 H 0.09 1.64 6.07 -2.39 -0.01 1.62 16 45 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -80.48 377.50 4.17 -76.32 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.99 Total: 11.78 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 6.91 Total: -0.78 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -5.58 Total: -103.20 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.17 Total: -33.24 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -80.48 4.17 -76.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232407818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.251 kcal (2) G-P(sol) polarization free energy of solvation -80.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds