Wall clock time and date at job start Tue Mar 31 2020 17:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47213 * 2 1 4 4 C 1.46505 * 120.00134 * 274.83207 * 3 2 1 5 5 C 1.50697 * 109.47229 * 270.00003 * 4 3 2 6 6 H 1.08001 * 120.00296 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00148 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99807 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00328 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47209 * 60.00258 * 9 7 5 11 11 H 1.48497 * 109.47568 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47113 * 300.00703 * 9 7 5 13 13 C 1.34777 * 120.00252 * 94.83280 * 3 2 1 14 14 O 1.21623 * 120.00258 * 185.76536 * 13 3 2 15 15 C 1.47263 * 119.99544 * 5.76626 * 13 3 2 16 16 C 1.46688 * 126.94585 * 53.77398 * 15 13 3 17 17 C 1.34484 * 106.33343 * 179.74935 * 16 15 13 18 18 C 1.50701 * 125.56763 * 180.24415 * 17 16 15 19 19 N 1.36445 * 108.85887 * 0.22941 * 17 16 15 20 20 C 1.46494 * 124.85035 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.47404 * 90.02404 * 20 19 17 22 22 C 1.34505 * 125.79290 * 89.99615 * 21 20 19 23 23 C 1.41388 * 106.84197 * 180.02562 * 22 21 20 24 24 C 1.34512 * 106.83893 * 0.02562 * 23 22 21 25 25 O 1.34303 * 108.42048 * 359.73262 * 24 23 22 26 26 C 1.34656 * 110.29621 * 359.97438 * 19 17 16 27 27 C 1.50702 * 125.80283 * 179.97438 * 26 19 17 28 28 H 1.09000 * 109.47198 * 299.99936 * 1 2 3 29 29 H 1.08995 * 109.47166 * 59.99886 * 1 2 3 30 30 H 1.09005 * 109.47434 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46711 * 239.99910 * 2 1 3 32 32 H 1.08995 * 109.47166 * 120.00114 * 2 1 3 33 33 H 1.09004 * 109.46624 * 30.00094 * 4 3 2 34 34 H 1.08995 * 109.46993 * 149.99808 * 4 3 2 35 35 H 0.97001 * 119.99669 * 179.97438 * 8 7 5 36 36 H 1.08006 * 126.82939 * 0.02562 * 16 15 13 37 37 H 1.08998 * 109.46913 * 89.98084 * 18 17 16 38 38 H 1.09007 * 109.46910 * 209.97903 * 18 17 16 39 39 H 1.08998 * 109.47617 * 329.97724 * 18 17 16 40 40 H 1.09007 * 109.46954 * 210.02175 * 20 19 17 41 41 H 1.08999 * 109.47036 * 330.01726 * 20 19 17 42 42 H 1.07997 * 126.58175 * 0.03937 * 22 21 20 43 43 H 1.07998 * 126.57806 * 179.97438 * 23 22 21 44 44 H 1.08003 * 125.79068 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.46786 * 90.00605 * 27 26 19 46 46 H 1.08994 * 109.47590 * 210.00693 * 27 26 19 47 47 H 1.09001 * 109.46855 * 330.00841 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1618 2.1075 -1.2642 5 6 3.5457 1.8846 -1.8174 6 1 4.2481 1.2636 -1.2812 7 6 3.9149 2.4724 -3.0086 8 7 3.0594 3.2282 -3.6619 9 14 5.6306 2.1968 -3.6940 10 1 5.8424 0.7459 -3.9292 11 1 5.7760 2.9328 -4.9755 12 1 6.6376 2.6927 -2.7217 13 6 2.3357 1.9838 1.1630 14 8 2.6404 3.1612 1.1746 15 6 2.3135 1.2165 2.4198 16 6 3.0134 -0.0425 2.6966 17 6 2.7109 -0.3725 3.9647 18 6 3.2082 -1.5932 4.6953 19 7 1.8805 0.5786 4.4819 20 6 1.3347 0.5639 5.8413 21 6 2.2738 1.2928 6.7676 22 6 2.2375 2.6074 7.0498 23 6 3.2928 2.8611 7.9560 24 6 3.9110 1.6864 8.1729 25 8 3.2862 0.7390 7.4548 26 6 1.6343 1.5327 3.5641 27 6 0.7622 2.7452 3.7650 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.4223 1.7440 -1.9779 34 1 2.0068 3.1724 -1.0911 35 1 3.3194 3.6420 -4.4998 36 1 3.6492 -0.5925 2.0185 37 1 4.1430 -1.3566 5.2037 38 1 2.4648 -1.9057 5.4287 39 1 3.3766 -2.4001 3.9822 40 1 0.3625 1.0570 5.8478 41 1 1.2214 -0.4671 6.1762 42 1 1.5368 3.3304 6.6593 43 1 3.5529 3.8152 8.3900 44 1 4.7624 1.5305 8.8189 45 1 1.3665 3.5682 4.1465 46 1 0.3154 3.0332 2.8135 47 1 -0.0261 2.5112 4.4805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319389131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:18 Heat of formation + Delta-G solvation = 28.621578 kcal Electronic energy + Delta-G solvation = -28702.331027 eV Core-core repulsion = 24853.000380 eV Total energy + Delta-G solvation = -3849.330647 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.89198 -41.26542 -38.39936 -35.02295 -34.01333 -33.08646 -32.65972 -32.52274 -29.91914 -29.76197 -29.13155 -27.31509 -25.88346 -24.61016 -22.96872 -22.64103 -22.08893 -21.05474 -20.67155 -19.37094 -17.82564 -17.43463 -16.77040 -16.26995 -16.07392 -15.70461 -15.34941 -15.27181 -14.46771 -14.12957 -14.08458 -13.94085 -13.32727 -13.21125 -13.10823 -13.06906 -12.96099 -12.89324 -12.75458 -12.42337 -12.19286 -12.17546 -12.01917 -11.85717 -11.74758 -11.43436 -11.20664 -11.07826 -10.80481 -10.51980 -10.39842 -10.20681 -10.01720 -9.52307 -8.89900 -8.82778 -8.35513 -8.27615 -7.75142 -7.41978 -5.94211 -3.98415 1.29071 2.11858 2.30029 2.67978 2.77543 2.99376 3.38578 3.42370 3.46363 3.89573 4.20500 4.28931 4.42553 4.55339 4.68749 4.74989 4.83088 4.85777 4.97715 5.20316 5.29246 5.38376 5.48333 5.51013 5.51805 5.60215 5.65253 5.69383 5.73825 5.79491 5.86035 5.88665 6.00795 6.05356 6.15653 6.19885 6.30635 6.41759 6.45569 6.70179 6.79327 7.05101 7.21674 7.32810 7.37955 7.60269 7.74951 8.04536 8.36333 8.66845 9.02478 9.33906 9.66810 11.13610 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.003085 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.695559 B = 9073.790152 C = 9353.499064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.581 3.419 14 O -0.547 6.547 15 C -0.195 4.195 16 C -0.160 4.160 17 C 0.011 3.989 18 C -0.079 4.079 19 N -0.441 5.441 20 C 0.186 3.814 21 C -0.042 4.042 22 C -0.181 4.181 23 C -0.215 4.215 24 C -0.031 4.031 25 O -0.171 6.171 26 C 0.073 3.927 27 C -0.084 4.084 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.262 0.738 36 H 0.144 0.856 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.119 0.881 41 H 0.105 0.895 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.204 0.796 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 -9.093 24.267 26.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.321 5.321 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.368 3.632 14 O -0.425 6.425 15 C -0.205 4.205 16 C -0.184 4.184 17 C -0.096 4.096 18 C -0.136 4.136 19 N -0.121 5.121 20 C 0.064 3.936 21 C -0.093 4.093 22 C -0.201 4.201 23 C -0.234 4.234 24 C -0.100 4.100 25 O -0.066 6.066 26 C -0.040 4.040 27 C -0.141 4.141 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.162 0.838 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.137 0.863 41 H 0.123 0.877 42 H 0.168 0.832 43 H 0.168 0.832 44 H 0.220 0.780 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.500 -8.694 24.348 26.432 hybrid contribution 1.139 0.147 -0.416 1.221 sum -4.361 -8.547 23.932 25.784 Atomic orbital electron populations 1.22137 0.97202 1.00889 1.01898 1.21503 0.93349 0.84413 1.02824 1.48092 1.62900 1.13459 1.07689 1.19229 0.96532 0.93141 0.78367 1.21452 0.98646 1.30336 1.05841 0.92517 1.24926 0.97407 0.95026 0.96760 1.69934 1.34986 1.32297 1.16347 0.86582 0.84723 0.78145 0.78104 1.20275 1.21247 1.20220 1.17348 0.77313 0.86035 0.82487 1.90732 1.48968 1.16101 1.86743 1.20437 1.06406 0.98688 0.94931 1.21725 1.04758 0.96778 0.95173 1.20093 1.00125 0.94619 0.94764 1.20276 1.00618 0.93187 0.99567 1.43353 1.39449 1.19673 1.09600 1.20000 0.93587 1.02149 0.77836 1.22493 0.93476 0.93449 0.99864 1.21696 1.01742 0.95211 1.01435 1.21881 0.98775 0.99536 1.03256 1.24098 0.99837 0.86829 0.99205 1.84007 1.36964 1.38040 1.47622 1.20000 1.02634 0.92841 0.88475 1.20372 0.97039 0.93293 1.03404 0.93280 0.92430 0.92645 0.90847 0.90337 0.95136 0.93879 0.92792 0.83787 0.91309 0.92194 0.90167 0.86278 0.87670 0.83236 0.83216 0.77951 0.90494 0.89780 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.24 37.16 0.38 -2.15 16 2 C 0.10 1.88 6.08 -4.04 -0.02 1.85 16 3 N -0.59 -13.57 2.46 -176.39 -0.43 -14.00 16 4 C 0.25 6.77 5.23 -5.19 -0.03 6.74 16 5 C -0.52 -15.47 9.39 -34.44 -0.32 -15.79 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -27.38 13.29 55.43 0.74 -26.65 16 9 Si 0.90 22.53 29.54 -169.99 -5.02 17.51 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 C 0.58 13.52 7.13 -12.59 -0.09 13.43 16 14 O -0.55 -14.97 16.66 5.26 0.09 -14.89 16 15 C -0.19 -3.63 5.12 -103.35 -0.53 -4.16 16 16 C -0.16 -2.57 8.88 -37.50 -0.33 -2.90 16 17 C 0.01 0.14 6.85 -81.87 -0.56 -0.42 16 18 C -0.08 -0.74 10.06 36.01 0.36 -0.38 16 19 N -0.44 -5.54 2.67 -109.24 -0.29 -5.83 16 20 C 0.19 1.64 6.10 -5.20 -0.03 1.60 16 21 C -0.04 -0.43 6.90 -35.63 -0.25 -0.68 16 22 C -0.18 -1.83 10.81 -39.70 -0.43 -2.26 16 23 C -0.22 -2.00 10.91 -39.70 -0.43 -2.43 16 24 C -0.03 -0.27 12.09 29.42 0.36 0.08 16 25 O -0.17 -1.79 10.65 5.70 0.06 -1.73 16 26 C 0.07 1.11 6.89 -81.88 -0.56 0.55 16 27 C -0.08 -1.09 9.87 36.01 0.36 -0.74 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.36 8.11 -51.93 -0.42 0.94 16 32 H 0.08 1.29 4.69 -51.93 -0.24 1.05 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.33 7.35 -51.93 -0.38 0.95 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.14 2.24 7.86 -52.48 -0.41 1.82 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.45 6.94 -51.92 -0.36 0.09 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.12 0.78 6.88 -51.92 -0.36 0.42 16 41 H 0.11 0.71 6.90 -51.93 -0.36 0.35 16 42 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.20 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.08 1.24 7.93 -51.93 -0.41 0.83 16 47 H 0.06 0.55 6.92 -51.93 -0.36 0.19 16 LS Contribution 395.39 15.07 5.96 5.96 Total: -1.00 -37.06 395.39 -8.21 -45.27 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.08 Total: 0.30 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.24 Total: -5.95 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.01 Total: -46.48 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.15 Total: -16.62 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.06 -8.21 -45.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319389131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.894 kcal (2) G-P(sol) polarization free energy of solvation -37.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds