Wall clock time and date at job start Tue Mar 31 2020 17:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.47213 * 2 1 4 4 C 1.46505 * 120.00134 * 274.83207 * 3 2 1 5 5 C 1.50697 * 109.47229 * 270.00003 * 4 3 2 6 6 H 1.08001 * 120.00296 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00148 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99807 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00328 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47209 * 60.00258 * 9 7 5 11 11 H 1.48497 * 109.47568 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47113 * 300.00703 * 9 7 5 13 13 C 1.34777 * 120.00252 * 94.83280 * 3 2 1 14 14 O 1.21623 * 120.00258 * 185.76536 * 13 3 2 15 15 C 1.47263 * 119.99544 * 5.76626 * 13 3 2 16 16 C 1.46688 * 126.94585 * 53.77398 * 15 13 3 17 17 C 1.34484 * 106.33343 * 179.74935 * 16 15 13 18 18 C 1.50701 * 125.56763 * 180.24415 * 17 16 15 19 19 N 1.36445 * 108.85887 * 0.22941 * 17 16 15 20 20 C 1.46494 * 124.85035 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.47404 * 90.02404 * 20 19 17 22 22 C 1.34505 * 125.79290 * 89.99615 * 21 20 19 23 23 C 1.41388 * 106.84197 * 180.02562 * 22 21 20 24 24 C 1.34512 * 106.83893 * 0.02562 * 23 22 21 25 25 O 1.34303 * 108.42048 * 359.73262 * 24 23 22 26 26 C 1.34656 * 110.29621 * 359.97438 * 19 17 16 27 27 C 1.50702 * 125.80283 * 179.97438 * 26 19 17 28 28 H 1.09000 * 109.47198 * 299.99936 * 1 2 3 29 29 H 1.08995 * 109.47166 * 59.99886 * 1 2 3 30 30 H 1.09005 * 109.47434 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46711 * 239.99910 * 2 1 3 32 32 H 1.08995 * 109.47166 * 120.00114 * 2 1 3 33 33 H 1.09004 * 109.46624 * 30.00094 * 4 3 2 34 34 H 1.08995 * 109.46993 * 149.99808 * 4 3 2 35 35 H 0.97001 * 119.99669 * 179.97438 * 8 7 5 36 36 H 1.08006 * 126.82939 * 0.02562 * 16 15 13 37 37 H 1.08998 * 109.46913 * 89.98084 * 18 17 16 38 38 H 1.09007 * 109.46910 * 209.97903 * 18 17 16 39 39 H 1.08998 * 109.47617 * 329.97724 * 18 17 16 40 40 H 1.09007 * 109.46954 * 210.02175 * 20 19 17 41 41 H 1.08999 * 109.47036 * 330.01726 * 20 19 17 42 42 H 1.07997 * 126.58175 * 0.03937 * 22 21 20 43 43 H 1.07998 * 126.57806 * 179.97438 * 23 22 21 44 44 H 1.08003 * 125.79068 * 180.02562 * 24 23 22 45 45 H 1.09001 * 109.46786 * 90.00605 * 27 26 19 46 46 H 1.08994 * 109.47590 * 210.00693 * 27 26 19 47 47 H 1.09001 * 109.46855 * 330.00841 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1618 2.1075 -1.2642 5 6 3.5457 1.8846 -1.8174 6 1 4.2481 1.2636 -1.2812 7 6 3.9149 2.4724 -3.0086 8 7 3.0594 3.2282 -3.6619 9 14 5.6306 2.1968 -3.6940 10 1 5.8424 0.7459 -3.9292 11 1 5.7760 2.9328 -4.9755 12 1 6.6376 2.6927 -2.7217 13 6 2.3357 1.9838 1.1630 14 8 2.6404 3.1612 1.1746 15 6 2.3135 1.2165 2.4198 16 6 3.0134 -0.0425 2.6966 17 6 2.7109 -0.3725 3.9647 18 6 3.2082 -1.5932 4.6953 19 7 1.8805 0.5786 4.4819 20 6 1.3347 0.5639 5.8413 21 6 2.2738 1.2928 6.7676 22 6 2.2375 2.6074 7.0498 23 6 3.2928 2.8611 7.9560 24 6 3.9110 1.6864 8.1729 25 8 3.2862 0.7390 7.4548 26 6 1.6343 1.5327 3.5641 27 6 0.7622 2.7452 3.7650 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.4223 1.7440 -1.9779 34 1 2.0068 3.1724 -1.0911 35 1 3.3194 3.6420 -4.4998 36 1 3.6492 -0.5925 2.0185 37 1 4.1430 -1.3566 5.2037 38 1 2.4648 -1.9057 5.4287 39 1 3.3766 -2.4001 3.9822 40 1 0.3625 1.0570 5.8478 41 1 1.2214 -0.4671 6.1762 42 1 1.5368 3.3304 6.6593 43 1 3.5529 3.8152 8.3900 44 1 4.7624 1.5305 8.8189 45 1 1.3665 3.5682 4.1465 46 1 0.3154 3.0332 2.8135 47 1 -0.0261 2.5112 4.4805 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319389131.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:17 Heat of formation + Delta-G solvation = 6.409238 kcal Electronic energy + Delta-G solvation = -28703.294226 eV Core-core repulsion = 24853.000380 eV Total energy + Delta-G solvation = -3850.293846 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.59062 -42.38266 -40.17204 -36.87030 -35.07236 -34.67482 -33.82257 -33.58109 -31.58578 -30.75520 -30.08213 -29.13175 -27.00040 -25.84431 -24.85486 -24.07336 -22.79974 -22.14788 -21.71485 -20.53169 -19.03675 -18.58642 -18.40178 -17.89919 -17.23688 -17.14353 -16.59016 -16.32102 -16.16327 -15.74104 -15.22597 -14.98538 -14.55372 -14.50709 -14.27843 -14.14354 -14.01489 -13.81077 -13.75784 -13.62730 -13.52332 -13.48907 -13.19592 -13.12757 -13.00650 -12.89935 -12.66309 -12.62072 -12.49122 -12.33797 -12.15226 -11.84228 -11.72543 -10.91109 -10.67673 -10.64136 -9.66646 -9.51562 -9.28614 -8.88689 -8.21351 -6.37108 0.55607 0.99288 1.35051 1.40384 1.44950 1.48711 1.57438 1.99763 2.09492 2.24345 2.36227 2.63137 3.06793 3.58589 3.76169 3.80182 3.90841 4.05597 4.10772 4.17944 4.22693 4.26602 4.32740 4.46692 4.51087 4.63704 4.66258 4.69911 4.82973 4.84740 4.91437 4.94987 4.98429 4.99454 5.04176 5.06046 5.11885 5.15396 5.20567 5.33286 5.37896 5.51435 5.59862 5.83270 5.92256 6.07152 6.08929 6.19096 6.37287 6.70725 6.87688 7.28547 7.55822 8.85306 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016109 B = 0.003085 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.695559 B = 9073.790152 C = 9353.499064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.100 3.900 3 N -0.595 5.595 4 C 0.264 3.736 5 C -0.546 4.546 6 H 0.050 0.950 7 C 0.008 3.992 8 N -0.928 5.928 9 Si 0.969 3.031 10 H -0.259 1.259 11 H -0.275 1.275 12 H -0.279 1.279 13 C 0.576 3.424 14 O -0.606 6.606 15 C -0.240 4.240 16 C -0.189 4.189 17 C 0.033 3.967 18 C -0.077 4.077 19 N -0.431 5.431 20 C 0.181 3.819 21 C -0.057 4.057 22 C -0.196 4.196 23 C -0.238 4.238 24 C -0.029 4.029 25 O -0.182 6.182 26 C 0.084 3.916 27 C -0.083 4.083 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.022 0.978 34 H -0.004 1.004 35 H 0.268 0.732 36 H 0.140 0.860 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.145 0.855 41 H 0.135 0.865 42 H 0.156 0.844 43 H 0.163 0.837 44 H 0.237 0.763 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.394 -11.706 26.882 29.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.142 3.858 5 C -0.585 4.585 6 H 0.069 0.931 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.793 3.207 10 H -0.183 1.183 11 H -0.199 1.199 12 H -0.205 1.205 13 C 0.366 3.634 14 O -0.489 6.489 15 C -0.250 4.250 16 C -0.213 4.213 17 C -0.075 4.075 18 C -0.134 4.134 19 N -0.109 5.109 20 C 0.061 3.939 21 C -0.107 4.107 22 C -0.216 4.216 23 C -0.257 4.257 24 C -0.097 4.097 25 O -0.078 6.078 26 C -0.031 4.031 27 C -0.140 4.140 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.040 0.960 34 H 0.014 0.986 35 H 0.077 0.923 36 H 0.158 0.842 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.163 0.837 41 H 0.153 0.847 42 H 0.174 0.826 43 H 0.181 0.819 44 H 0.253 0.747 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.348 -11.367 26.993 29.773 hybrid contribution 1.059 0.992 -1.101 1.822 sum -4.289 -10.375 25.891 28.221 Atomic orbital electron populations 1.22043 0.94866 1.03073 1.01055 1.21770 0.95228 0.81740 1.03518 1.48118 1.62998 1.15069 1.06315 1.18687 0.95749 0.91039 0.80292 1.21691 0.99370 1.30905 1.06509 0.93144 1.25880 1.01966 0.94345 0.96896 1.70056 1.37169 1.32762 1.16767 0.85453 0.78745 0.79109 0.77412 1.18307 1.19949 1.20472 1.18093 0.75702 0.85657 0.83914 1.90670 1.51587 1.18857 1.87780 1.20108 1.10311 1.00558 0.93980 1.21730 1.06169 0.96413 0.96978 1.20590 0.98132 0.95049 0.93735 1.20417 1.01291 0.91569 1.00149 1.43587 1.38406 1.18295 1.10583 1.20455 0.93981 1.04348 0.75141 1.22664 0.93980 0.93594 1.00502 1.22006 1.02215 0.95684 1.01669 1.22214 0.99065 1.00652 1.03725 1.24807 0.99995 0.86294 0.98585 1.84000 1.37174 1.38671 1.47943 1.20134 1.01564 0.93361 0.87994 1.20405 0.97876 0.92408 1.03310 0.93098 0.94263 0.88819 0.91570 0.88087 0.96034 0.98577 0.92327 0.84208 0.91028 0.89472 0.88819 0.83704 0.84730 0.82584 0.81929 0.74716 0.90936 0.92283 0.87622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 10.24 71.98 0.74 -3.94 16 2 C 0.10 3.70 6.08 86.38 0.52 4.23 16 3 N -0.60 -29.01 2.46 -830.23 -2.04 -31.05 16 4 C 0.26 15.51 5.23 85.63 0.45 15.96 16 5 C -0.55 -33.75 9.39 25.60 0.24 -33.51 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.49 5.46 84.65 0.46 0.95 16 8 N -0.93 -58.53 13.29 21.45 0.28 -58.25 16 9 Si 0.97 46.98 29.54 68.60 2.03 49.01 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 12 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 13 C 0.58 28.52 7.13 86.62 0.62 29.14 16 14 O -0.61 -35.83 16.66 -4.10 -0.07 -35.90 16 15 C -0.24 -9.14 5.12 -19.04 -0.10 -9.24 16 16 C -0.19 -5.98 8.88 23.62 0.21 -5.77 16 17 C 0.03 0.79 6.85 40.98 0.28 1.07 16 18 C -0.08 -1.14 10.06 71.24 0.72 -0.43 16 19 N -0.43 -9.66 2.67 -499.51 -1.33 -11.00 16 20 C 0.18 2.46 6.10 85.64 0.52 2.98 16 21 C -0.06 -1.00 6.90 24.83 0.17 -0.83 16 22 C -0.20 -3.57 10.81 22.19 0.24 -3.33 16 23 C -0.24 -3.96 10.91 22.19 0.24 -3.72 16 24 C -0.03 -0.43 12.09 66.97 0.81 0.38 16 25 O -0.18 -3.27 10.65 -2.51 -0.03 -3.30 16 26 C 0.08 2.51 6.89 41.78 0.29 2.80 16 27 C -0.08 -2.12 9.87 71.24 0.70 -1.42 16 28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.07 2.52 8.11 -2.39 -0.02 2.50 16 32 H 0.10 3.31 4.69 -2.39 -0.01 3.30 16 33 H 0.02 1.28 8.07 -2.38 -0.02 1.26 16 34 H 0.00 -0.26 7.35 -2.39 -0.02 -0.28 16 35 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 36 H 0.14 4.37 7.86 -2.91 -0.02 4.35 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 0.85 6.94 -2.38 -0.02 0.84 16 39 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.15 1.22 6.88 -2.38 -0.02 1.21 16 41 H 0.13 1.09 6.90 -2.39 -0.02 1.08 16 42 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 43 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.24 1.50 8.06 -2.91 -0.02 1.48 16 45 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 1.82 7.93 -2.39 -0.02 1.80 16 47 H 0.11 1.65 6.92 -2.39 -0.02 1.64 16 Total: -1.00 -87.05 395.39 6.93 -80.12 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.97 Total: 15.04 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 7.12 Total: -4.68 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -3.09 Total: -100.29 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.10 Total: -39.20 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -87.05 6.93 -80.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319389131.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.530 kcal (2) G-P(sol) polarization free energy of solvation -87.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds