Wall clock time and date at job start Tue Mar 31 2020 16:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47163 * 2 1 4 4 C 1.53003 * 109.47398 * 239.99937 * 2 1 3 5 5 N 1.46501 * 109.46871 * 65.00347 * 4 2 1 6 6 C 1.34769 * 120.00011 * 180.02562 * 5 4 2 7 7 O 1.21358 * 119.99800 * 359.97438 * 6 5 4 8 8 C 1.49453 * 120.00473 * 179.97438 * 6 5 4 9 9 O 1.21351 * 119.99369 * 5.09242 * 8 6 5 10 10 N 1.34769 * 120.00243 * 185.08548 * 8 6 5 11 11 C 1.46497 * 120.00011 * 185.03773 * 10 8 6 12 12 C 1.53005 * 109.47129 * 184.78311 * 11 10 8 13 13 C 1.50703 * 115.54676 * 294.81585 * 12 11 10 14 14 H 1.07998 * 119.99578 * 95.20301 * 13 12 11 15 15 C 1.37876 * 120.00032 * 274.92215 * 13 12 11 16 16 N 1.31513 * 120.00087 * 355.42383 * 15 13 12 17 17 Si 1.86797 * 119.99764 * 175.41970 * 15 13 12 18 18 H 1.48506 * 109.47089 * 90.00605 * 17 15 13 19 19 H 1.48500 * 109.47109 * 210.00447 * 17 15 13 20 20 H 1.48505 * 109.47313 * 330.00182 * 17 15 13 21 21 C 1.52992 * 117.50017 * 80.49188 * 12 11 10 22 22 C 1.52998 * 117.49741 * 149.15238 * 12 11 10 23 23 C 1.50700 * 109.47118 * 119.99864 * 2 1 3 24 24 C 1.38242 * 120.00037 * 59.72653 * 23 2 1 25 25 C 1.38232 * 119.99812 * 179.81089 * 24 23 2 26 26 C 1.38236 * 120.00392 * 0.39588 * 25 24 23 27 27 C 1.38239 * 119.99508 * 359.85995 * 26 25 24 28 28 C 1.38227 * 120.00359 * 359.95287 * 27 26 25 29 29 H 1.08996 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47447 * 300.00180 * 1 2 3 31 31 H 1.08997 * 109.46892 * 60.00095 * 1 2 3 32 32 H 1.08999 * 109.46869 * 305.00087 * 4 2 1 33 33 H 1.08999 * 109.46858 * 184.99941 * 4 2 1 34 34 H 0.97004 * 120.00150 * 359.97438 * 5 4 2 35 35 H 0.97000 * 120.00088 * 5.04363 * 10 8 6 36 36 H 1.09004 * 109.47290 * 64.78043 * 11 10 8 37 37 H 1.09002 * 109.47245 * 304.78204 * 11 10 8 38 38 H 0.97005 * 120.00163 * 184.99518 * 16 15 13 39 39 H 1.09001 * 117.49686 * 215.00072 * 21 12 11 40 40 H 1.09004 * 117.49963 * 0.02562 * 21 12 11 41 41 H 1.09001 * 117.50544 * 359.96959 * 22 12 11 42 42 H 1.09001 * 117.50141 * 144.97625 * 22 12 11 43 43 H 1.08002 * 119.99392 * 359.97438 * 24 23 2 44 44 H 1.08003 * 119.99680 * 180.23660 * 25 24 23 45 45 H 1.07997 * 119.99846 * 179.83430 * 26 25 24 46 46 H 1.08004 * 119.99169 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.00008 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0354 -2.4424 6 6 1.9957 -0.4135 -3.6659 7 8 2.6261 -1.4443 -3.7792 8 6 1.6000 0.3581 -4.8831 9 8 1.0512 1.4342 -4.7675 10 7 1.8527 -0.1412 -6.1092 11 6 1.5660 0.6618 -7.3004 12 6 1.8288 -0.1745 -8.5545 13 6 3.2633 -0.5789 -8.7771 14 1 3.6111 -1.5437 -8.4384 15 6 4.1303 0.2803 -9.4184 16 7 3.6853 1.4137 -9.9153 17 14 5.9370 -0.1655 -9.5811 18 1 6.1486 -0.9222 -10.8413 19 1 6.7527 1.0751 -9.6058 20 1 6.3461 -1.0039 -8.4256 21 6 0.7415 -1.1601 -8.9870 22 6 0.9779 0.1205 -9.7914 23 6 2.0323 -0.7104 1.2305 24 6 1.6937 -2.0322 1.4521 25 6 2.1577 -2.6849 2.5788 26 6 2.9536 -2.0136 3.4881 27 6 3.2878 -0.6902 3.2691 28 6 2.8270 -0.0386 2.1405 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 3.1264 -0.7994 -1.2055 34 1 1.1484 0.8592 -2.3518 35 1 2.2243 -1.0323 -6.2028 36 1 2.2094 1.5417 -7.3090 37 1 0.5221 0.9751 -7.2849 38 1 4.2783 1.9841 -10.4290 39 1 1.0638 -2.1013 -9.4325 40 1 -0.1612 -1.2126 -8.3783 41 1 0.2305 0.9100 -9.7116 42 1 1.4557 0.0223 -10.7661 43 1 1.0688 -2.5556 0.7436 44 1 1.8963 -3.7188 2.7501 45 1 3.3138 -2.5228 4.3697 46 1 3.9093 -0.1656 3.9797 47 1 3.0878 0.9954 1.9696 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326911124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:24 Heat of formation + Delta-G solvation = -33.971432 kcal Electronic energy + Delta-G solvation = -27033.932027 eV Core-core repulsion = 23181.887144 eV Total energy + Delta-G solvation = -3852.044883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.40411 -39.73738 -38.23879 -36.72039 -36.37356 -33.80008 -32.99210 -31.97254 -31.23361 -29.70780 -27.62895 -26.56644 -25.38887 -23.93686 -23.03553 -22.34719 -21.15909 -20.58351 -19.87855 -19.49866 -18.06881 -17.20262 -16.54840 -16.14609 -15.98649 -15.58283 -15.27852 -15.10688 -14.73995 -14.65562 -14.44331 -13.96884 -13.94105 -13.64980 -13.49538 -13.34603 -13.07569 -12.77686 -12.67850 -12.38751 -11.89902 -11.72287 -11.62998 -11.58120 -11.33507 -11.16772 -11.04714 -10.99680 -10.94873 -10.52789 -10.25356 -9.62407 -9.26889 -9.25190 -9.21278 -9.09283 -9.02637 -8.53701 -8.39317 -8.18562 -6.08983 -4.18594 1.01254 1.08871 1.78442 2.67398 3.26760 3.34662 3.38794 3.46042 3.59601 4.00728 4.32429 4.35675 4.39903 4.64293 4.69048 4.76013 4.81767 4.92069 5.00188 5.16084 5.18643 5.21701 5.33920 5.37782 5.45724 5.54614 5.68716 5.70799 5.76137 5.86838 5.95524 6.14165 6.20593 6.23423 6.28142 6.30377 6.39514 6.47186 6.66284 6.67809 6.74580 6.98631 7.08062 7.21354 7.32624 7.49614 7.80904 7.85152 8.14524 8.31284 8.51602 8.83604 9.49116 10.98028 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.002199 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.284718 B =12727.856786 C =13457.071169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 H 0.088 0.912 4 C 0.126 3.874 5 N -0.707 5.707 6 C 0.508 3.492 7 O -0.518 6.518 8 C 0.495 3.505 9 O -0.542 6.542 10 N -0.666 5.666 11 C 0.159 3.841 12 C 0.020 3.980 13 C -0.500 4.500 14 H 0.062 0.938 15 C 0.073 3.927 16 N -0.876 5.876 17 Si 0.890 3.110 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.210 4.210 22 C -0.139 4.139 23 C -0.074 4.074 24 C -0.112 4.112 25 C -0.118 4.118 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.113 4.113 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.412 0.588 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.262 0.738 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.205 -3.633 24.025 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 H 0.107 0.893 4 C 0.003 3.997 5 N -0.362 5.362 6 C 0.289 3.711 7 O -0.392 6.392 8 C 0.275 3.725 9 O -0.421 6.421 10 N -0.315 5.315 11 C 0.037 3.963 12 C 0.019 3.981 13 C -0.538 4.538 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.512 5.512 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.247 4.247 22 C -0.177 4.177 23 C -0.075 4.075 24 C -0.130 4.130 25 C -0.136 4.136 26 C -0.142 4.142 27 C -0.138 4.138 28 C -0.131 4.131 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.248 0.752 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.034 -3.411 23.932 24.693 hybrid contribution 1.042 -0.162 -0.159 1.066 sum -3.992 -3.573 23.774 24.370 Atomic orbital electron populations 1.21898 0.93419 1.02712 1.02418 1.20384 0.96854 0.99750 0.91334 0.89348 1.21479 1.00675 0.95267 0.82284 1.45743 1.57243 1.28236 1.04955 1.20493 0.80253 0.85489 0.84903 1.90766 1.38219 1.23529 1.86722 1.19922 0.81320 0.86406 0.84882 1.90709 1.42600 1.22038 1.86745 1.45892 1.60391 1.20576 1.04676 1.21216 0.98440 0.94148 0.82531 1.19039 0.91926 0.96251 0.90840 1.20381 0.91880 1.02031 1.39470 0.92001 1.24989 0.98558 0.94585 0.94972 1.69988 1.35884 1.11420 1.33894 0.86615 0.85073 0.77936 0.78609 1.20643 1.21173 1.19614 1.23032 1.00578 0.94877 1.06216 1.22474 1.01583 0.95999 0.97683 1.19656 0.97845 0.94316 0.95667 1.21061 1.00006 0.94233 0.97666 1.21163 0.97965 0.99939 0.94562 1.21175 0.98629 0.94900 0.99471 1.21149 1.00002 0.94998 0.97600 1.21096 0.97680 1.00004 0.94364 0.92048 0.92023 0.91762 0.90807 0.90838 0.75193 0.74991 0.90786 0.93381 0.92858 0.90212 0.91644 0.91729 0.89388 0.85883 0.86017 0.86190 0.86067 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.88 37.16 0.33 -0.72 16 2 C -0.06 -0.50 2.60 -91.77 -0.24 -0.74 16 3 H 0.09 0.64 7.88 -51.93 -0.41 0.23 16 4 C 0.13 1.30 4.81 -4.04 -0.02 1.28 16 5 N -0.71 -8.71 5.28 -60.73 -0.32 -9.03 16 6 C 0.51 8.28 7.89 -11.59 -0.09 8.19 16 7 O -0.52 -9.60 16.50 5.49 0.09 -9.50 16 8 C 0.50 9.24 7.88 -11.59 -0.09 9.15 16 9 O -0.54 -10.85 16.47 5.50 0.09 -10.76 16 10 N -0.67 -13.33 5.46 -60.73 -0.33 -13.66 16 11 C 0.16 3.53 5.53 -4.04 -0.02 3.51 16 12 C 0.02 0.47 1.47 -155.66 -0.23 0.24 16 13 C -0.50 -12.97 8.59 -34.44 -0.30 -13.27 16 14 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 15 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 16 N -0.88 -24.09 12.65 55.43 0.70 -23.39 16 17 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 C -0.21 -4.36 9.96 -26.70 -0.27 -4.63 16 22 C -0.14 -3.15 9.14 -26.70 -0.24 -3.39 16 23 C -0.07 -0.61 4.78 -104.62 -0.50 -1.11 16 24 C -0.11 -0.90 8.76 -39.58 -0.35 -1.25 16 25 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 26 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 27 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 28 C -0.11 -0.89 9.67 -39.59 -0.38 -1.27 16 29 H 0.06 0.43 7.37 -51.93 -0.38 0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.47 7.18 -51.93 -0.37 0.09 16 32 H 0.07 0.77 7.59 -51.93 -0.39 0.38 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.41 4.53 7.14 -40.82 -0.29 4.24 16 35 H 0.41 8.23 7.84 -40.82 -0.32 7.91 16 36 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 37 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 38 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 39 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 40 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 43 H 0.12 0.88 7.16 -52.49 -0.38 0.51 16 44 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 45 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 46 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 47 H 0.12 0.79 7.95 -52.49 -0.42 0.37 16 LS Contribution 398.20 15.07 6.00 6.00 Total: -1.00 -29.90 398.20 -9.63 -39.53 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.15 Total: 11.04 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -3.69 Total: -6.03 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.05 Total: -46.08 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: 0.18 Total: -20.26 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.90 -9.63 -39.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326911124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.559 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds