Wall clock time and date at job start Tue Mar 31 2020 16:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47163 * 2 1 4 4 C 1.53003 * 109.47398 * 239.99937 * 2 1 3 5 5 N 1.46501 * 109.46871 * 65.00347 * 4 2 1 6 6 C 1.34769 * 120.00011 * 180.02562 * 5 4 2 7 7 O 1.21358 * 119.99800 * 359.97438 * 6 5 4 8 8 C 1.49453 * 120.00473 * 179.97438 * 6 5 4 9 9 O 1.21351 * 119.99369 * 5.09242 * 8 6 5 10 10 N 1.34769 * 120.00243 * 185.08548 * 8 6 5 11 11 C 1.46497 * 120.00011 * 185.03773 * 10 8 6 12 12 C 1.53005 * 109.47129 * 184.78311 * 11 10 8 13 13 C 1.50703 * 115.54676 * 294.81585 * 12 11 10 14 14 H 1.07998 * 119.99578 * 95.20301 * 13 12 11 15 15 C 1.37876 * 120.00032 * 274.92215 * 13 12 11 16 16 N 1.31513 * 120.00087 * 355.42383 * 15 13 12 17 17 Si 1.86797 * 119.99764 * 175.41970 * 15 13 12 18 18 H 1.48506 * 109.47089 * 90.00605 * 17 15 13 19 19 H 1.48500 * 109.47109 * 210.00447 * 17 15 13 20 20 H 1.48505 * 109.47313 * 330.00182 * 17 15 13 21 21 C 1.52992 * 117.50017 * 80.49188 * 12 11 10 22 22 C 1.52998 * 117.49741 * 149.15238 * 12 11 10 23 23 C 1.50700 * 109.47118 * 119.99864 * 2 1 3 24 24 C 1.38242 * 120.00037 * 59.72653 * 23 2 1 25 25 C 1.38232 * 119.99812 * 179.81089 * 24 23 2 26 26 C 1.38236 * 120.00392 * 0.39588 * 25 24 23 27 27 C 1.38239 * 119.99508 * 359.85995 * 26 25 24 28 28 C 1.38227 * 120.00359 * 359.95287 * 27 26 25 29 29 H 1.08996 * 109.47019 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47447 * 300.00180 * 1 2 3 31 31 H 1.08997 * 109.46892 * 60.00095 * 1 2 3 32 32 H 1.08999 * 109.46869 * 305.00087 * 4 2 1 33 33 H 1.08999 * 109.46858 * 184.99941 * 4 2 1 34 34 H 0.97004 * 120.00150 * 359.97438 * 5 4 2 35 35 H 0.97000 * 120.00088 * 5.04363 * 10 8 6 36 36 H 1.09004 * 109.47290 * 64.78043 * 11 10 8 37 37 H 1.09002 * 109.47245 * 304.78204 * 11 10 8 38 38 H 0.97005 * 120.00163 * 184.99518 * 16 15 13 39 39 H 1.09001 * 117.49686 * 215.00072 * 21 12 11 40 40 H 1.09004 * 117.49963 * 0.02562 * 21 12 11 41 41 H 1.09001 * 117.50544 * 359.96959 * 22 12 11 42 42 H 1.09001 * 117.50141 * 144.97625 * 22 12 11 43 43 H 1.08002 * 119.99392 * 359.97438 * 24 23 2 44 44 H 1.08003 * 119.99680 * 180.23660 * 25 24 23 45 45 H 1.07997 * 119.99846 * 179.83430 * 26 25 24 46 46 H 1.08004 * 119.99169 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.00008 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 1.6526 0.0354 -2.4424 6 6 1.9957 -0.4135 -3.6659 7 8 2.6261 -1.4443 -3.7792 8 6 1.6000 0.3581 -4.8831 9 8 1.0512 1.4342 -4.7675 10 7 1.8527 -0.1412 -6.1092 11 6 1.5660 0.6618 -7.3004 12 6 1.8288 -0.1745 -8.5545 13 6 3.2633 -0.5789 -8.7771 14 1 3.6111 -1.5437 -8.4384 15 6 4.1303 0.2803 -9.4184 16 7 3.6853 1.4137 -9.9153 17 14 5.9370 -0.1655 -9.5811 18 1 6.1486 -0.9222 -10.8413 19 1 6.7527 1.0751 -9.6058 20 1 6.3461 -1.0039 -8.4256 21 6 0.7415 -1.1601 -8.9870 22 6 0.9779 0.1205 -9.7914 23 6 2.0323 -0.7104 1.2305 24 6 1.6937 -2.0322 1.4521 25 6 2.1577 -2.6849 2.5788 26 6 2.9536 -2.0136 3.4881 27 6 3.2878 -0.6902 3.2691 28 6 2.8270 -0.0386 2.1405 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 3.1264 -0.7994 -1.2055 34 1 1.1484 0.8592 -2.3518 35 1 2.2243 -1.0323 -6.2028 36 1 2.2094 1.5417 -7.3090 37 1 0.5221 0.9751 -7.2849 38 1 4.2783 1.9841 -10.4290 39 1 1.0638 -2.1013 -9.4325 40 1 -0.1612 -1.2126 -8.3783 41 1 0.2305 0.9100 -9.7116 42 1 1.4557 0.0223 -10.7661 43 1 1.0688 -2.5556 0.7436 44 1 1.8963 -3.7188 2.7501 45 1 3.3138 -2.5228 4.3697 46 1 3.9093 -0.1656 3.9797 47 1 3.0878 0.9954 1.9696 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326911124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:24 Heat of formation + Delta-G solvation = -51.215020 kcal Electronic energy + Delta-G solvation = -27034.679766 eV Core-core repulsion = 23181.887144 eV Total energy + Delta-G solvation = -3852.792621 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.69926 -40.46814 -39.63718 -38.46192 -37.28300 -35.20595 -34.15458 -33.95189 -31.77402 -30.34055 -28.97422 -27.88463 -27.21116 -24.90871 -23.82856 -23.19313 -22.87669 -21.50252 -21.38338 -20.91747 -19.51090 -18.10577 -17.99455 -17.53693 -17.13000 -16.74676 -16.57501 -16.31806 -16.03676 -15.85519 -15.72982 -15.27914 -14.95425 -14.64922 -14.52066 -14.40219 -14.15929 -13.91937 -13.69397 -13.51451 -13.44364 -12.96906 -12.95126 -12.83452 -12.77141 -12.39019 -12.38475 -12.20366 -12.01399 -11.76391 -11.63947 -11.42089 -10.98200 -10.76706 -10.45761 -10.33849 -10.12028 -9.96199 -9.78884 -9.61589 -8.11078 -6.24534 0.37316 0.43993 0.53145 1.37927 1.40192 1.43995 1.52157 2.16718 2.41296 2.69961 2.90151 3.16457 3.42113 3.59832 3.67098 3.76712 3.97239 4.15667 4.19327 4.19931 4.32104 4.37759 4.51688 4.60564 4.62685 4.63271 4.68079 4.68861 4.78878 4.91370 4.92111 5.02328 5.03578 5.11472 5.19312 5.20592 5.28691 5.31737 5.34830 5.52892 5.61050 5.66387 5.68497 5.72372 5.76980 5.98571 6.14398 6.35530 6.45716 6.76911 6.82787 6.99657 7.45070 8.95469 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018057 B = 0.002199 C = 0.002080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.284718 B =12727.856786 C =13457.071169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 H 0.097 0.903 4 C 0.127 3.873 5 N -0.685 5.685 6 C 0.513 3.487 7 O -0.542 6.542 8 C 0.497 3.503 9 O -0.555 6.555 10 N -0.670 5.670 11 C 0.175 3.825 12 C -0.005 4.005 13 C -0.507 4.507 14 H 0.057 0.943 15 C 0.028 3.972 16 N -0.903 5.903 17 Si 0.945 3.055 18 H -0.275 1.275 19 H -0.288 1.288 20 H -0.271 1.271 21 C -0.181 4.181 22 C -0.145 4.145 23 C -0.085 4.085 24 C -0.124 4.124 25 C -0.129 4.129 26 C -0.131 4.131 27 C -0.128 4.128 28 C -0.125 4.125 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.420 0.580 35 H 0.415 0.585 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.260 0.740 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.128 0.872 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 -4.255 25.836 26.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 H 0.115 0.885 4 C 0.004 3.996 5 N -0.339 5.339 6 C 0.293 3.707 7 O -0.420 6.420 8 C 0.277 3.723 9 O -0.435 6.435 10 N -0.319 5.319 11 C 0.051 3.949 12 C -0.005 4.005 13 C -0.545 4.545 14 H 0.075 0.925 15 C -0.173 4.173 16 N -0.541 5.541 17 Si 0.771 3.229 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.195 1.195 21 C -0.218 4.218 22 C -0.183 4.183 23 C -0.086 4.086 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.149 4.149 27 C -0.146 4.146 28 C -0.143 4.143 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.258 0.742 35 H 0.251 0.749 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.145 0.855 44 H 0.154 0.846 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.370 -4.029 25.782 26.642 hybrid contribution 1.113 0.023 -0.627 1.278 sum -4.257 -4.005 25.155 25.825 Atomic orbital electron populations 1.21891 0.92754 1.02898 1.02738 1.20300 0.97290 0.99766 0.89898 0.88484 1.21628 1.00269 0.95496 0.82196 1.45702 1.55684 1.28208 1.04289 1.20013 0.80468 0.85018 0.85154 1.90763 1.39738 1.24487 1.86964 1.20324 0.80466 0.86261 0.85238 1.90696 1.43063 1.22684 1.87050 1.45805 1.60966 1.20439 1.04714 1.20835 0.98006 0.92988 0.83044 1.19088 0.91604 0.98210 0.91635 1.20645 0.93397 1.01685 1.38742 0.92460 1.25632 1.01851 0.94716 0.95135 1.70083 1.36866 1.12264 1.34838 0.85756 0.81100 0.77460 0.78577 1.20083 1.21377 1.19516 1.23021 1.00146 0.93937 1.04664 1.22394 1.01761 0.97762 0.96416 1.19716 0.98415 0.94556 0.95891 1.21233 1.00387 0.94446 0.98166 1.21431 0.97968 1.00793 0.94485 1.21479 0.98312 0.95079 1.00017 1.21439 1.00068 0.95287 0.97816 1.21328 0.97647 1.00719 0.94579 0.91978 0.91240 0.91863 0.90651 0.91681 0.74193 0.74897 0.94132 0.92523 0.93064 0.89946 0.89135 0.90583 0.91632 0.85450 0.84605 0.84417 0.84390 0.84864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.88 71.98 0.64 -1.17 16 2 C -0.05 -0.75 2.60 -11.54 -0.03 -0.78 16 3 H 0.10 1.20 7.88 -2.38 -0.02 1.19 16 4 C 0.13 2.44 4.81 86.38 0.42 2.85 16 5 N -0.68 -15.93 5.28 -464.41 -2.45 -18.38 16 6 C 0.51 16.29 7.89 87.27 0.69 16.97 16 7 O -0.54 -19.74 16.50 -3.27 -0.05 -19.80 16 8 C 0.50 18.23 7.88 87.27 0.69 18.91 16 9 O -0.56 -21.82 16.47 -3.25 -0.05 -21.87 16 10 N -0.67 -26.60 5.46 -464.41 -2.54 -29.14 16 11 C 0.17 7.74 5.53 86.38 0.48 8.22 16 12 C 0.00 -0.22 1.47 -52.93 -0.08 -0.29 16 13 C -0.51 -26.37 8.59 25.60 0.22 -26.15 16 14 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 15 C 0.03 1.48 5.43 84.65 0.46 1.94 16 16 N -0.90 -50.40 12.65 21.45 0.27 -50.13 16 17 Si 0.94 42.99 29.54 68.60 2.03 45.01 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 C -0.18 -7.22 9.96 30.61 0.30 -6.92 16 22 C -0.15 -6.51 9.14 30.62 0.28 -6.23 16 23 C -0.09 -1.28 4.78 -19.86 -0.09 -1.38 16 24 C -0.12 -1.86 8.76 22.27 0.20 -1.67 16 25 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 26 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 27 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 28 C -0.12 -1.77 9.67 22.27 0.22 -1.55 16 29 H 0.06 0.77 7.37 -2.39 -0.02 0.75 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.80 7.18 -2.39 -0.02 0.78 16 32 H 0.08 1.48 7.59 -2.39 -0.02 1.46 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.42 8.53 7.14 -92.71 -0.66 7.87 16 35 H 0.41 16.37 7.84 -92.71 -0.73 15.65 16 36 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 2.38 8.05 -2.39 -0.02 2.36 16 38 H 0.26 13.99 8.32 -92.70 -0.77 13.22 16 39 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 40 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 41 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.13 1.69 7.16 -2.91 -0.02 1.67 16 44 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 46 H 0.14 1.23 8.06 -2.91 -0.02 1.21 16 47 H 0.13 1.49 7.95 -2.91 -0.02 1.47 16 Total: -1.00 -63.17 398.20 1.85 -61.32 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.40 Total: 34.67 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: 5.05 Total: -1.68 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -4.72 Total: -97.65 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -0.11 Total: -41.67 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -63.17 1.85 -61.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326911124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.103 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds