Wall clock time and date at job start Tue Mar 31 2020 16:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.36733 * 127.13679 * 269.69006 * 3 2 1 5 5 C 1.50703 * 126.34999 * 359.95530 * 4 3 2 6 6 C 1.53004 * 109.46522 * 90.00202 * 5 4 3 7 7 C 1.50703 * 109.46522 * 180.02562 * 6 5 4 8 8 H 1.07991 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99528 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00133 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99749 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47025 * 60.00351 * 11 9 7 13 13 H 1.48505 * 109.47209 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47396 * 300.00134 * 11 9 7 15 15 N 1.30302 * 107.30266 * 179.83389 * 4 3 2 16 16 N 1.28522 * 110.05482 * 0.43818 * 15 4 3 17 17 C 1.31225 * 109.85904 * 359.72315 * 16 15 4 18 18 N 1.38585 * 126.47235 * 179.97438 * 17 16 15 19 19 C 1.47477 * 111.00098 * 95.98895 * 18 17 16 20 20 C 1.53505 * 87.93340 * 221.29674 * 19 18 17 21 21 O 1.42901 * 114.17149 * 139.67313 * 20 19 18 22 22 C 1.42904 * 113.99865 * 116.16053 * 21 20 19 23 23 C 1.53002 * 109.46782 * 180.02562 * 22 21 20 24 24 F 1.39894 * 109.47294 * 299.99816 * 23 22 21 25 25 F 1.39900 * 109.47253 * 60.00293 * 23 22 21 26 26 C 1.47484 * 110.99719 * 0.02562 * 18 17 16 27 27 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 32 32 H 1.08993 * 109.47211 * 210.00101 * 5 4 3 33 33 H 1.09000 * 109.47098 * 330.00974 * 5 4 3 34 34 H 1.08996 * 109.47463 * 300.00350 * 6 5 4 35 35 H 1.09000 * 109.46803 * 60.00591 * 6 5 4 36 36 H 0.97005 * 120.00036 * 179.97438 * 10 9 7 37 37 H 1.08998 * 113.47887 * 336.06941 * 19 18 17 38 38 H 1.09007 * 113.47083 * 106.53155 * 19 18 17 39 39 H 1.09007 * 114.17370 * 272.37734 * 20 19 18 40 40 H 1.09001 * 109.46904 * 299.99959 * 22 21 20 41 41 H 1.08989 * 109.47427 * 60.00176 * 22 21 20 42 42 H 1.09007 * 109.46827 * 179.97438 * 23 22 21 43 43 H 1.08998 * 113.47428 * 253.47178 * 26 18 17 44 44 H 1.08993 * 113.47726 * 23.88051 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2992 2.1575 -1.0900 5 6 2.1646 1.7507 -2.5349 6 6 0.7588 2.0932 -3.0322 7 6 0.6240 1.6859 -4.4768 8 1 1.4574 1.2282 -4.9888 9 6 -0.5634 1.8977 -5.1449 10 7 -1.5782 2.4556 -4.5215 11 14 -0.7308 1.3921 -6.9353 12 1 -0.5049 -0.0703 -7.0599 13 1 -2.0948 1.7258 -7.4185 14 1 0.2745 2.1195 -7.7511 15 7 2.7022 3.3151 -0.6479 16 7 2.7038 3.3198 0.6373 17 6 2.2930 2.1578 1.0878 18 7 2.1632 1.7889 2.4174 19 6 0.7767 1.9749 2.8845 20 6 1.3517 2.5293 4.1953 21 8 0.6436 3.6570 4.7141 22 6 0.0228 3.4216 5.9796 23 6 -0.7026 4.6893 6.4353 24 9 0.2179 5.7359 6.5550 25 9 -1.6788 5.0321 5.4937 26 6 2.5537 2.8937 3.3129 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.9020 2.2857 -3.1331 33 1 2.3312 0.6775 -2.6272 34 1 0.0213 1.5583 -2.4339 35 1 0.5922 3.1665 -2.9399 36 1 -2.4135 2.6049 -4.9916 37 1 0.2196 2.7133 2.3079 38 1 0.2319 1.0392 3.0107 39 1 1.5638 1.7687 4.9468 40 1 -0.6947 2.6064 5.8862 41 1 0.7832 3.1541 6.7131 42 1 -1.1765 4.5095 7.4004 43 1 3.5150 2.7368 3.8022 44 1 2.4717 3.8772 2.8504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339652967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:08 Heat of formation + Delta-G solvation = -30.254658 kcal Electronic energy + Delta-G solvation = -28486.874051 eV Core-core repulsion = 24113.053561 eV Total energy + Delta-G solvation = -4373.820491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.19274 -47.23074 -42.77673 -40.45130 -37.45969 -35.56402 -34.03548 -32.02676 -30.88111 -30.30324 -29.42340 -27.08345 -26.42606 -25.11980 -23.83921 -23.38941 -21.96487 -21.55152 -20.03763 -19.73954 -18.47308 -17.74507 -17.46282 -17.16566 -16.62116 -16.29242 -16.16241 -15.92217 -15.27153 -14.82764 -14.54768 -14.24061 -14.16226 -13.94842 -13.67713 -13.57765 -13.30217 -13.14123 -12.93324 -12.83871 -12.61103 -12.32186 -12.05967 -11.79039 -11.60055 -11.40155 -11.32345 -11.20589 -11.02213 -10.96239 -10.72452 -10.47716 -10.05837 -9.98357 -9.91277 -9.80873 -9.45651 -9.23803 -8.41755 -8.23561 -6.06808 -4.11002 2.00950 2.45094 2.88438 3.21293 3.29769 3.35059 3.37197 3.47648 3.78256 3.79806 3.89083 4.12342 4.37138 4.39922 4.51202 4.64317 4.72008 4.79012 4.88716 4.98459 5.02763 5.11497 5.19882 5.27090 5.28903 5.29110 5.47352 5.53229 5.62134 5.71426 5.77188 5.97920 6.22740 6.33180 6.37323 6.44457 6.60984 6.64278 6.86737 7.35672 7.55685 7.67441 7.90503 8.27837 8.94709 9.14172 9.53527 11.04145 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.002548 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.750437 B =10985.799919 C =11716.963512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.109 3.891 3 N -0.468 5.468 4 C 0.218 3.782 5 C -0.032 4.032 6 C 0.032 3.968 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.060 3.940 10 N -0.892 5.892 11 Si 0.895 3.105 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.275 1.275 15 N -0.295 5.295 16 N -0.312 5.312 17 C 0.296 3.704 18 N -0.393 5.393 19 C -0.010 4.010 20 C 0.061 3.939 21 O -0.354 6.354 22 C 0.007 3.993 23 C 0.270 3.730 24 F -0.199 7.199 25 F -0.198 7.198 26 C 0.023 3.977 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.017 0.983 35 H 0.025 0.975 36 H 0.262 0.738 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.100 0.900 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.575 -5.481 25.055 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 N -0.162 5.162 4 C -0.049 4.049 5 C -0.072 4.072 6 C -0.006 4.006 7 C -0.563 4.563 8 H 0.076 0.924 9 C -0.142 4.142 10 N -0.530 5.530 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.201 1.201 15 N -0.134 5.134 16 N -0.156 5.156 17 C -0.060 4.060 18 N -0.118 5.118 19 C -0.138 4.138 20 C 0.002 3.998 21 O -0.271 6.271 22 C -0.071 4.071 23 C 0.216 3.784 24 F -0.180 7.180 25 F -0.179 7.179 26 C -0.105 4.105 27 H 0.101 0.899 28 H 0.074 0.926 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.127 0.873 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.141 0.859 43 H 0.119 0.881 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.208 -4.452 24.922 25.519 hybrid contribution -1.043 -1.119 -1.037 1.848 sum 2.166 -5.571 23.885 24.621 Atomic orbital electron populations 1.22269 0.93613 1.03347 1.04064 1.21827 0.96116 0.78846 1.04556 1.46299 1.50343 1.13934 1.05610 1.25665 0.98772 0.87925 0.92568 1.20474 1.03602 1.00605 0.82541 1.19113 0.87770 0.97867 0.95877 1.21097 0.98392 1.40826 0.96025 0.92353 1.25003 0.95860 0.95041 0.98281 1.69958 1.03301 1.42897 1.36879 0.86620 0.77224 0.78967 0.84980 1.20217 1.21279 1.20073 1.74024 1.20069 1.17533 1.01799 1.74436 1.21220 1.15507 1.04431 1.22948 1.05677 0.89025 0.88378 1.65905 1.11928 1.36925 0.97031 1.24557 0.91202 1.02329 0.95752 1.23786 0.92905 0.88745 0.94329 1.88104 1.69059 1.35882 1.34094 1.23784 0.98412 0.96825 0.88108 1.22013 0.80199 0.83970 0.92174 1.93022 1.67617 1.60784 1.96600 1.93039 1.63246 1.93266 1.68356 1.24086 0.98774 0.95914 0.91773 0.89901 0.92572 0.90462 0.88953 0.88374 0.89228 0.91191 0.96457 0.95677 0.92790 0.89214 0.88505 0.87251 0.89918 0.89853 0.85894 0.88133 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.43 6.74 -4.04 -0.03 1.41 16 3 N -0.47 -8.01 2.81 -114.08 -0.32 -8.33 16 4 C 0.22 4.41 7.32 -154.01 -1.13 3.28 16 5 C -0.03 -0.66 5.53 -27.88 -0.15 -0.82 16 6 C 0.03 0.80 4.96 -27.88 -0.14 0.66 16 7 C -0.53 -14.26 9.11 -34.44 -0.31 -14.57 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 11 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 N -0.30 -6.57 12.18 32.99 0.40 -6.17 16 16 N -0.31 -6.36 10.75 30.32 0.33 -6.03 16 17 C 0.30 5.09 6.91 -318.86 -2.20 2.89 16 18 N -0.39 -5.15 6.47 -184.08 -1.19 -6.34 16 19 C -0.01 -0.11 6.84 -7.57 -0.05 -0.16 16 20 C 0.06 0.55 4.65 -26.21 -0.12 0.43 16 21 O -0.35 -3.69 10.28 -35.23 -0.36 -4.05 16 22 C 0.01 0.04 6.01 37.16 0.22 0.26 16 23 C 0.27 1.84 5.63 37.16 0.21 2.05 16 24 F -0.20 -1.98 17.28 2.25 0.04 -1.94 16 25 F -0.20 -2.10 17.28 2.25 0.04 -2.06 16 26 C 0.02 0.27 7.34 -7.56 -0.06 0.21 16 27 H 0.08 1.41 6.27 -51.93 -0.33 1.08 16 28 H 0.06 0.70 7.07 -51.93 -0.37 0.34 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 1.21 7.24 -51.93 -0.38 0.84 16 32 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 33 H 0.07 1.27 7.26 -51.93 -0.38 0.89 16 34 H 0.02 0.45 6.27 -51.93 -0.33 0.12 16 35 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.09 1.28 7.89 -51.93 -0.41 0.87 16 38 H 0.10 0.87 7.77 -51.93 -0.40 0.47 16 39 H 0.11 0.64 7.88 -51.93 -0.41 0.23 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.29 8.14 -51.94 -0.42 -0.13 16 42 H 0.12 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.11 1.60 7.01 -51.93 -0.36 1.24 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -35.29 373.78 -9.48 -44.77 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.28 Total: -1.32 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.48 Total: -4.69 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.05 Total: -52.45 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.36 Total: -4.05 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.08 Total: -4.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.29 -9.48 -44.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339652967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.515 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds