Wall clock time and date at job start Tue Mar 31 2020 16:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.36733 * 127.13679 * 269.69006 * 3 2 1 5 5 C 1.50703 * 126.34999 * 359.95530 * 4 3 2 6 6 C 1.53004 * 109.46522 * 90.00202 * 5 4 3 7 7 C 1.50703 * 109.46522 * 180.02562 * 6 5 4 8 8 H 1.07991 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99528 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00133 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99749 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47025 * 60.00351 * 11 9 7 13 13 H 1.48505 * 109.47209 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.47396 * 300.00134 * 11 9 7 15 15 N 1.30302 * 107.30266 * 179.83389 * 4 3 2 16 16 N 1.28522 * 110.05482 * 0.43818 * 15 4 3 17 17 C 1.31225 * 109.85904 * 359.72315 * 16 15 4 18 18 N 1.38585 * 126.47235 * 179.97438 * 17 16 15 19 19 C 1.47477 * 111.00098 * 95.98895 * 18 17 16 20 20 C 1.53505 * 87.93340 * 221.29674 * 19 18 17 21 21 O 1.42901 * 114.17149 * 139.67313 * 20 19 18 22 22 C 1.42904 * 113.99865 * 116.16053 * 21 20 19 23 23 C 1.53002 * 109.46782 * 180.02562 * 22 21 20 24 24 F 1.39894 * 109.47294 * 299.99816 * 23 22 21 25 25 F 1.39900 * 109.47253 * 60.00293 * 23 22 21 26 26 C 1.47484 * 110.99719 * 0.02562 * 18 17 16 27 27 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 32 32 H 1.08993 * 109.47211 * 210.00101 * 5 4 3 33 33 H 1.09000 * 109.47098 * 330.00974 * 5 4 3 34 34 H 1.08996 * 109.47463 * 300.00350 * 6 5 4 35 35 H 1.09000 * 109.46803 * 60.00591 * 6 5 4 36 36 H 0.97005 * 120.00036 * 179.97438 * 10 9 7 37 37 H 1.08998 * 113.47887 * 336.06941 * 19 18 17 38 38 H 1.09007 * 113.47083 * 106.53155 * 19 18 17 39 39 H 1.09007 * 114.17370 * 272.37734 * 20 19 18 40 40 H 1.09001 * 109.46904 * 299.99959 * 22 21 20 41 41 H 1.08989 * 109.47427 * 60.00176 * 22 21 20 42 42 H 1.09007 * 109.46827 * 179.97438 * 23 22 21 43 43 H 1.08998 * 113.47428 * 253.47178 * 26 18 17 44 44 H 1.08993 * 113.47726 * 23.88051 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2992 2.1575 -1.0900 5 6 2.1646 1.7507 -2.5349 6 6 0.7588 2.0932 -3.0322 7 6 0.6240 1.6859 -4.4768 8 1 1.4574 1.2282 -4.9888 9 6 -0.5634 1.8977 -5.1449 10 7 -1.5782 2.4556 -4.5215 11 14 -0.7308 1.3921 -6.9353 12 1 -0.5049 -0.0703 -7.0599 13 1 -2.0948 1.7258 -7.4185 14 1 0.2745 2.1195 -7.7511 15 7 2.7022 3.3151 -0.6479 16 7 2.7038 3.3198 0.6373 17 6 2.2930 2.1578 1.0878 18 7 2.1632 1.7889 2.4174 19 6 0.7767 1.9749 2.8845 20 6 1.3517 2.5293 4.1953 21 8 0.6436 3.6570 4.7141 22 6 0.0228 3.4216 5.9796 23 6 -0.7026 4.6893 6.4353 24 9 0.2179 5.7359 6.5550 25 9 -1.6788 5.0321 5.4937 26 6 2.5537 2.8937 3.3129 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.9020 2.2857 -3.1331 33 1 2.3312 0.6775 -2.6272 34 1 0.0213 1.5583 -2.4339 35 1 0.5922 3.1665 -2.9399 36 1 -2.4135 2.6049 -4.9916 37 1 0.2196 2.7133 2.3079 38 1 0.2319 1.0392 3.0107 39 1 1.5638 1.7687 4.9468 40 1 -0.6947 2.6064 5.8862 41 1 0.7832 3.1541 6.7131 42 1 -1.1765 4.5095 7.4004 43 1 3.5150 2.7368 3.8022 44 1 2.4717 3.8772 2.8504 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339652967.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:07 Heat of formation + Delta-G solvation = -53.312000 kcal Electronic energy + Delta-G solvation = -28487.873893 eV Core-core repulsion = 24113.053561 eV Total energy + Delta-G solvation = -4374.820332 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.82044 -47.89473 -44.18773 -41.40992 -38.20628 -36.93016 -35.90032 -33.84839 -31.94044 -31.41389 -30.57073 -28.39657 -27.50196 -26.80295 -25.03480 -23.90198 -23.77596 -22.69425 -21.29122 -21.05520 -19.28520 -18.66048 -18.34661 -18.24681 -17.80920 -17.56839 -17.29185 -16.82312 -16.53032 -16.14481 -15.83243 -15.44899 -15.19242 -14.91693 -14.76690 -14.61469 -14.41026 -14.26984 -14.20209 -14.09296 -13.78169 -13.40262 -13.26806 -13.13945 -12.86698 -12.64016 -12.59129 -12.48687 -12.36822 -12.24554 -11.89206 -11.84008 -11.78894 -11.65231 -11.33359 -11.20958 -10.83061 -10.68467 -10.56158 -9.72471 -8.20841 -6.33231 0.62672 1.21010 1.42361 1.45822 1.53169 1.67792 2.22920 2.41466 2.78886 3.00780 3.06023 3.13326 3.37608 3.43818 3.59713 3.64626 3.65978 3.80167 3.90056 3.99011 4.05335 4.16826 4.28212 4.31670 4.36322 4.43676 4.53328 4.55494 4.59332 4.63752 4.69054 4.71914 4.81922 4.82065 4.95665 5.08661 5.12251 5.44428 5.47284 5.60225 5.78518 6.01278 6.05306 6.15713 6.82313 7.36636 7.64014 8.90943 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.002548 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.750437 B =10985.799919 C =11716.963512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.102 3.898 3 N -0.465 5.465 4 C 0.202 3.798 5 C -0.017 4.017 6 C 0.043 3.957 7 C -0.540 4.540 8 H 0.072 0.928 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.967 3.033 12 H -0.259 1.259 13 H -0.288 1.288 14 H -0.269 1.269 15 N -0.336 5.336 16 N -0.351 5.351 17 C 0.315 3.685 18 N -0.382 5.382 19 C -0.014 4.014 20 C 0.089 3.911 21 O -0.391 6.391 22 C -0.001 4.001 23 C 0.253 3.747 24 F -0.222 7.222 25 F -0.226 7.226 26 C 0.010 3.990 27 H 0.036 0.964 28 H 0.059 0.941 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.004 0.996 35 H -0.023 1.023 36 H 0.263 0.737 37 H 0.050 0.950 38 H 0.128 0.872 39 H 0.158 0.842 40 H 0.108 0.892 41 H 0.117 0.883 42 H 0.177 0.823 43 H 0.123 0.877 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.896 -8.700 26.952 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.158 5.158 4 C -0.066 4.066 5 C -0.056 4.056 6 C 0.005 3.995 7 C -0.578 4.578 8 H 0.090 0.910 9 C -0.196 4.196 10 N -0.574 5.574 11 Si 0.792 3.208 12 H -0.184 1.184 13 H -0.213 1.213 14 H -0.194 1.194 15 N -0.175 5.175 16 N -0.194 5.194 17 C -0.043 4.043 18 N -0.107 5.107 19 C -0.142 4.142 20 C 0.030 3.970 21 O -0.309 6.309 22 C -0.077 4.077 23 C 0.201 3.799 24 F -0.204 7.204 25 F -0.208 7.208 26 C -0.118 4.118 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.129 0.871 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.105 0.895 33 H 0.117 0.883 34 H 0.022 0.978 35 H -0.005 1.005 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.146 0.854 39 H 0.175 0.825 40 H 0.126 0.874 41 H 0.135 0.865 42 H 0.194 0.806 43 H 0.141 0.859 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.539 -7.687 26.833 28.136 hybrid contribution -1.185 -0.102 -1.455 1.879 sum 2.354 -7.789 25.378 26.650 Atomic orbital electron populations 1.22208 0.93670 1.04788 1.01869 1.22229 0.95975 0.76893 1.06770 1.46499 1.49659 1.15086 1.04584 1.25432 0.99838 0.88268 0.93108 1.20186 1.00306 1.02232 0.82896 1.18875 0.90483 0.94495 0.95637 1.21556 0.98845 1.40460 0.96906 0.90953 1.25982 0.95484 0.94921 1.03219 1.70118 1.03951 1.44366 1.38956 0.85465 0.77070 0.79414 0.78899 1.18368 1.21330 1.19396 1.73904 1.21451 1.19022 1.03094 1.74353 1.23691 1.17595 1.03781 1.23441 1.02867 0.87986 0.89979 1.66063 1.13314 1.36819 0.94512 1.24621 0.89946 1.03035 0.96587 1.23776 0.90163 0.88918 0.94134 1.88075 1.69524 1.36873 1.36446 1.24153 0.99707 0.96948 0.86922 1.22874 0.79763 0.83459 0.93853 1.92970 1.68555 1.62133 1.96717 1.92979 1.64423 1.93559 1.69804 1.24189 1.01613 0.93810 0.92169 0.94516 0.92221 0.87123 0.85515 0.87344 0.89458 0.88320 0.97826 1.00450 0.92820 0.93102 0.85376 0.82462 0.87370 0.86504 0.80608 0.85900 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 10.24 71.98 0.74 -3.46 16 2 C 0.10 2.48 6.74 86.38 0.58 3.06 16 3 N -0.47 -15.89 2.81 -514.84 -1.45 -17.33 16 4 C 0.20 8.48 7.32 137.64 1.01 9.48 16 5 C -0.02 -0.69 5.53 29.85 0.16 -0.53 16 6 C 0.04 2.29 4.96 29.85 0.15 2.43 16 7 C -0.54 -29.74 9.11 25.60 0.23 -29.51 16 8 H 0.07 3.70 7.74 -2.92 -0.02 3.68 16 9 C 0.00 0.11 5.46 84.66 0.46 0.58 16 10 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 11 Si 0.97 43.38 29.54 68.60 2.03 45.41 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 15 N -0.34 -15.77 12.18 -49.53 -0.60 -16.37 16 16 N -0.35 -14.99 10.75 -58.00 -0.62 -15.62 16 17 C 0.31 10.89 6.91 260.11 1.80 12.69 16 18 N -0.38 -9.40 6.47 -736.70 -4.76 -14.17 16 19 C -0.01 -0.28 6.84 83.56 0.57 0.29 16 20 C 0.09 1.36 4.65 30.93 0.14 1.51 16 21 O -0.39 -7.52 10.28 -148.98 -1.53 -9.05 16 22 C 0.00 -0.01 6.01 71.98 0.43 0.43 16 23 C 0.25 2.97 5.63 71.98 0.41 3.37 16 24 F -0.22 -4.29 17.28 44.97 0.78 -3.51 16 25 F -0.23 -4.74 17.28 44.97 0.78 -3.96 16 26 C 0.01 0.23 7.34 83.56 0.61 0.85 16 27 H 0.04 1.27 6.27 -2.39 -0.01 1.26 16 28 H 0.06 1.42 7.07 -2.39 -0.02 1.41 16 29 H 0.11 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.11 2.43 7.24 -2.39 -0.02 2.41 16 32 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 33 H 0.10 3.51 7.26 -2.39 -0.02 3.50 16 34 H 0.00 0.19 6.27 -2.39 -0.01 0.18 16 35 H -0.02 -1.42 8.14 -2.39 -0.02 -1.43 16 36 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 37 H 0.05 1.49 7.89 -2.39 -0.02 1.47 16 38 H 0.13 1.86 7.77 -2.38 -0.02 1.84 16 39 H 0.16 0.95 7.88 -2.38 -0.02 0.93 16 40 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 41 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.18 0.11 8.14 -2.38 -0.02 0.09 16 43 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.07 2.24 7.01 -2.39 -0.02 2.23 16 Total: -1.00 -83.97 373.78 3.21 -80.76 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 1.02 Total: 9.28 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 7.30 Total: 1.18 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -7.15 Total: -120.09 kcal Atomic # 8 Polarization: -7.52 SS G_CDS: -1.53 Total: -9.05 kcal Atomic # 9 Polarization: -9.03 SS G_CDS: 1.55 Total: -7.47 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -83.97 3.21 -80.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339652967.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.447 kcal (2) G-P(sol) polarization free energy of solvation -83.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds