Wall clock time and date at job start Tue Mar 31 2020 16:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47181 * 2 1 4 4 N 1.46498 * 109.46853 * 239.99478 * 2 1 3 5 5 C 1.34772 * 120.00316 * 85.00555 * 4 2 1 6 6 O 1.21285 * 119.99441 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00602 * 179.97438 * 5 4 2 8 8 H 1.09000 * 109.47094 * 59.99413 * 7 5 4 9 9 C 1.50700 * 109.46925 * 299.99996 * 7 5 4 10 10 H 1.08005 * 120.00082 * 333.21036 * 9 7 5 11 11 C 1.37881 * 120.00340 * 153.21256 * 9 7 5 12 12 N 1.31510 * 119.99438 * 5.54696 * 11 9 7 13 13 Si 1.86791 * 120.00145 * 185.82541 * 11 9 7 14 14 H 1.48499 * 109.47301 * 269.72520 * 13 11 9 15 15 H 1.48506 * 109.47389 * 29.72309 * 13 11 9 16 16 H 1.48499 * 109.47244 * 149.72458 * 13 11 9 17 17 C 1.50695 * 109.47443 * 179.97438 * 7 5 4 18 18 C 1.38235 * 119.99778 * 66.52041 * 17 7 5 19 19 C 1.38235 * 119.99587 * 179.78506 * 18 17 7 20 20 C 1.38232 * 120.00404 * 0.45003 * 19 18 17 21 21 C 1.38235 * 119.99588 * 359.80214 * 20 19 18 22 22 C 1.38234 * 119.99881 * 246.79661 * 17 7 5 23 23 C 1.50700 * 109.46838 * 119.99779 * 2 1 3 24 24 O 1.21283 * 120.00392 * 92.02147 * 23 2 1 25 25 N 1.34780 * 120.00147 * 272.02045 * 23 2 1 26 26 C 1.47023 * 125.64566 * 4.58916 * 25 23 2 27 27 C 1.54318 * 107.27569 * 180.97063 * 26 25 23 28 28 C 1.55157 * 102.86204 * 22.52647 * 27 26 25 29 29 C 1.47423 * 125.65075 * 184.90062 * 25 23 2 30 30 H 1.09002 * 109.46629 * 305.44952 * 1 2 3 31 31 H 1.08992 * 109.46925 * 65.44464 * 1 2 3 32 32 H 1.08998 * 109.47402 * 185.44996 * 1 2 3 33 33 H 0.97003 * 120.00123 * 265.00050 * 4 2 1 34 34 H 0.97001 * 120.00472 * 355.22283 * 12 11 9 35 35 H 1.07997 * 120.00461 * 0.02562 * 18 17 7 36 36 H 1.08008 * 119.99948 * 180.27207 * 19 18 17 37 37 H 1.08002 * 120.00583 * 179.83375 * 20 19 18 38 38 H 1.08000 * 120.00001 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.00342 * 359.97438 * 22 17 7 40 40 H 1.09003 * 109.88058 * 300.51061 * 26 25 23 41 41 H 1.08995 * 109.88293 * 61.67440 * 26 25 23 42 42 H 1.08996 * 110.91814 * 264.11031 * 27 26 25 43 43 H 1.09004 * 110.58672 * 140.78449 * 27 26 25 44 44 H 1.09001 * 110.99727 * 206.22951 * 28 27 26 45 45 H 1.08997 * 111.00552 * 82.38084 * 28 27 26 46 46 H 1.09004 * 110.36204 * 274.66937 * 29 25 23 47 47 H 1.08995 * 110.36779 * 36.87893 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8583 1.1582 -2.4117 7 6 2.6499 -0.7288 -3.5874 8 1 1.9777 -1.5512 -3.8324 9 6 4.0315 -1.2706 -3.3252 10 1 4.6697 -0.7928 -2.5965 11 6 4.4810 -2.3762 -4.0156 12 7 3.7493 -2.8921 -4.9789 13 14 6.1257 -3.1459 -3.5775 14 1 7.1982 -2.5181 -4.3904 15 1 6.4058 -2.9280 -2.1355 16 1 6.0806 -4.6034 -3.8583 17 6 2.7000 0.2392 -4.7412 18 6 3.5909 1.2959 -4.7186 19 6 3.6399 2.1813 -5.7791 20 6 2.7917 2.0155 -6.8578 21 6 1.8972 0.9617 -6.8780 22 6 1.8511 0.0737 -5.8196 23 6 2.0323 -0.7104 1.2305 24 8 2.2694 -1.8991 1.1902 25 7 2.2181 -0.0247 2.3759 26 6 1.8826 1.3905 2.5914 27 6 2.2920 1.7435 4.0368 28 6 3.3595 0.6669 4.3662 29 6 2.7973 -0.5676 3.6181 30 1 -0.3633 0.5961 0.8372 31 1 -0.3633 0.4270 -0.9347 32 1 -0.3634 -1.0230 0.0976 33 1 2.2490 -1.6319 -1.1525 34 1 2.8638 -2.5387 -5.1578 35 1 4.2514 1.4275 -3.8743 36 1 4.3391 3.0045 -5.7634 37 1 2.8281 2.7088 -7.6851 38 1 1.2347 0.8319 -7.7210 39 1 1.1523 -0.7495 -5.8354 40 1 2.4325 2.0133 1.8858 41 1 0.8106 1.5407 2.4644 42 1 1.4410 1.6625 4.7130 43 1 2.7259 2.7426 4.0790 44 1 3.4109 0.4834 5.4394 45 1 4.3354 0.9511 3.9728 46 1 2.0261 -1.0543 4.2151 47 1 3.5977 -1.2707 3.3878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361426863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:19 Heat of formation + Delta-G solvation = -55.393256 kcal Electronic energy + Delta-G solvation = -28654.553832 eV Core-core repulsion = 24801.580029 eV Total energy + Delta-G solvation = -3852.973803 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39063 -39.20213 -37.98080 -37.33566 -34.50440 -33.94854 -32.00395 -30.89828 -30.19643 -30.01939 -29.14907 -27.06843 -25.07629 -23.74933 -22.82335 -21.64219 -21.50096 -20.82324 -19.55523 -19.31819 -17.75019 -16.94718 -16.73622 -16.26830 -15.76696 -15.49352 -14.87673 -14.70907 -14.37043 -13.98238 -13.85899 -13.78465 -13.72933 -13.51211 -13.14438 -12.89242 -12.75965 -12.54524 -12.37117 -12.19809 -12.13403 -11.99823 -11.65465 -11.60053 -11.50470 -11.43833 -11.05384 -10.95552 -10.79149 -10.29842 -10.18940 -10.13254 -9.79932 -8.98906 -8.86185 -8.80929 -8.58386 -8.51847 -8.02138 -7.65038 -6.53106 -4.28448 2.28415 2.32967 2.54546 2.77110 3.38452 3.43196 3.56192 3.58644 3.90825 4.17336 4.26386 4.43886 4.57541 4.65252 4.76722 4.96179 5.05676 5.18431 5.21526 5.24267 5.34882 5.40636 5.50879 5.56839 5.58445 5.66358 5.69406 5.71119 5.80584 5.82704 5.85215 6.06424 6.10169 6.17863 6.23311 6.40458 6.47276 6.62952 6.87858 6.96307 7.00999 7.29413 7.34582 7.36394 7.59732 7.83418 7.96139 8.07646 8.21975 8.27655 8.64482 9.07408 9.43133 10.86022 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.003818 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.503206 B = 7332.626431 C = 8668.207977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.132 3.868 3 H 0.101 0.899 4 N -0.715 5.715 5 C 0.538 3.462 6 O -0.564 6.564 7 C 0.045 3.955 8 H 0.066 0.934 9 C -0.593 4.593 10 H 0.057 0.943 11 C 0.033 3.967 12 N -0.893 5.893 13 Si 1.070 2.930 14 H -0.286 1.286 15 H -0.286 1.286 16 H -0.282 1.282 17 C -0.017 4.017 18 C -0.078 4.078 19 C -0.133 4.133 20 C -0.146 4.146 21 C -0.129 4.129 22 C -0.127 4.127 23 C 0.530 3.470 24 O -0.526 6.526 25 N -0.621 5.621 26 C 0.095 3.905 27 C -0.131 4.131 28 C -0.134 4.134 29 C 0.105 3.895 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.415 0.585 34 H 0.273 0.727 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.474 8.472 14.539 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.119 0.881 4 N -0.369 5.369 5 C 0.328 3.672 6 O -0.443 6.443 7 C 0.024 3.976 8 H 0.084 0.916 9 C -0.630 4.630 10 H 0.075 0.925 11 C -0.174 4.174 12 N -0.527 5.527 13 Si 0.898 3.102 14 H -0.213 1.213 15 H -0.212 1.212 16 H -0.208 1.208 17 C -0.018 4.018 18 C -0.096 4.096 19 C -0.151 4.151 20 C -0.164 4.164 21 C -0.147 4.147 22 C -0.145 4.145 23 C 0.318 3.682 24 O -0.401 6.401 25 N -0.357 5.357 26 C -0.028 4.028 27 C -0.169 4.169 28 C -0.172 4.172 29 C -0.017 4.017 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.252 0.748 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.096 0.904 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.512 7.398 13.945 16.172 hybrid contribution -0.894 0.849 0.446 1.311 sum -4.406 8.248 14.392 17.163 Atomic orbital electron populations 1.22079 0.93298 1.02726 1.03191 1.20577 0.95391 0.97781 0.83983 0.88076 1.45822 1.68192 1.15223 1.07696 1.21368 0.74273 0.86755 0.84814 1.90578 1.51275 1.16688 1.85736 1.18143 0.99512 0.93189 0.86776 0.91628 1.21545 0.98559 1.15356 1.27552 0.92455 1.25844 1.04794 0.94207 0.92576 1.70762 1.11421 1.44105 1.26438 0.83512 0.74336 0.76574 0.75796 1.21296 1.21188 1.20752 1.20083 0.92492 0.93682 0.95590 1.20780 0.97612 0.93851 0.97355 1.20977 0.99671 0.99623 0.94816 1.20817 0.98166 0.98936 0.98505 1.20881 0.99577 0.95959 0.98261 1.20965 0.99537 0.99209 0.94786 1.20525 0.77222 0.87098 0.83385 1.90724 1.50758 1.14828 1.83838 1.48467 1.63273 1.11922 1.12005 1.22137 1.00862 0.82144 0.97676 1.22633 0.99303 0.99742 0.95190 1.22803 0.99026 0.94681 1.00730 1.22224 0.98086 0.96600 0.84836 0.91852 0.90545 0.91849 0.74785 0.91533 0.87040 0.87436 0.87536 0.87408 0.87313 0.90886 0.91027 0.90419 0.89816 0.89731 0.90401 0.91472 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.47 37.16 0.35 -1.77 16 2 C 0.13 2.14 2.49 -69.08 -0.17 1.96 16 3 H 0.10 1.64 6.59 -51.93 -0.34 1.29 16 4 N -0.71 -14.16 4.96 -54.94 -0.27 -14.43 16 5 C 0.54 12.09 7.01 -10.99 -0.08 12.01 16 6 O -0.56 -13.32 15.10 5.55 0.08 -13.24 16 7 C 0.05 1.09 1.95 -94.08 -0.18 0.91 16 8 H 0.07 1.64 6.59 -51.93 -0.34 1.30 16 9 C -0.59 -15.48 7.45 -34.44 -0.26 -15.74 16 10 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 11 C 0.03 0.89 5.45 -17.82 -0.10 0.79 16 12 N -0.89 -25.33 13.63 55.43 0.76 -24.58 16 13 Si 1.07 24.52 29.91 -169.99 -5.08 19.44 16 14 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 C -0.02 -0.41 4.20 -104.63 -0.44 -0.85 16 18 C -0.08 -1.78 8.33 -39.58 -0.33 -2.11 16 19 C -0.13 -2.66 10.05 -39.58 -0.40 -3.05 16 20 C -0.15 -2.74 10.05 -39.58 -0.40 -3.14 16 21 C -0.13 -2.51 10.05 -39.58 -0.40 -2.90 16 22 C -0.13 -2.78 9.58 -39.58 -0.38 -3.16 16 23 C 0.53 8.47 7.03 -10.98 -0.08 8.39 16 24 O -0.53 -10.21 16.35 5.55 0.09 -10.12 16 25 N -0.62 -7.63 3.33 -170.52 -0.57 -8.20 16 26 C 0.09 0.85 6.27 -3.07 -0.02 0.83 16 27 C -0.13 -0.82 6.95 -24.90 -0.17 -0.99 16 28 C -0.13 -0.94 7.08 -24.58 -0.17 -1.12 16 29 C 0.10 1.07 6.89 -2.53 -0.02 1.05 16 30 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.41 8.62 7.71 -40.82 -0.31 8.30 16 34 H 0.27 7.64 6.56 -40.82 -0.27 7.37 16 35 H 0.11 2.61 7.88 -52.49 -0.41 2.19 16 36 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 39 H 0.11 2.25 7.96 -52.49 -0.42 1.84 16 40 H 0.07 0.68 7.67 -51.93 -0.40 0.28 16 41 H 0.07 0.56 7.45 -51.93 -0.39 0.17 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -32.49 387.82 -9.51 -42.00 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -7.12 Total: 12.19 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.24 Total: -8.90 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.08 Total: -47.21 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.17 Total: -23.36 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.08 Total: 19.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.49 -9.51 -42.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361426863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.394 kcal (2) G-P(sol) polarization free energy of solvation -32.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds