Wall clock time and date at job start Tue Mar 31 2020 16:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08991 * 109.47181 * 2 1 4 4 N 1.46498 * 109.46853 * 239.99478 * 2 1 3 5 5 C 1.34772 * 120.00316 * 85.00555 * 4 2 1 6 6 O 1.21285 * 119.99441 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00602 * 179.97438 * 5 4 2 8 8 H 1.09000 * 109.47094 * 59.99413 * 7 5 4 9 9 C 1.50700 * 109.46925 * 299.99996 * 7 5 4 10 10 H 1.08005 * 120.00082 * 333.21036 * 9 7 5 11 11 C 1.37881 * 120.00340 * 153.21256 * 9 7 5 12 12 N 1.31510 * 119.99438 * 5.54696 * 11 9 7 13 13 Si 1.86791 * 120.00145 * 185.82541 * 11 9 7 14 14 H 1.48499 * 109.47301 * 269.72520 * 13 11 9 15 15 H 1.48506 * 109.47389 * 29.72309 * 13 11 9 16 16 H 1.48499 * 109.47244 * 149.72458 * 13 11 9 17 17 C 1.50695 * 109.47443 * 179.97438 * 7 5 4 18 18 C 1.38235 * 119.99778 * 66.52041 * 17 7 5 19 19 C 1.38235 * 119.99587 * 179.78506 * 18 17 7 20 20 C 1.38232 * 120.00404 * 0.45003 * 19 18 17 21 21 C 1.38235 * 119.99588 * 359.80214 * 20 19 18 22 22 C 1.38234 * 119.99881 * 246.79661 * 17 7 5 23 23 C 1.50700 * 109.46838 * 119.99779 * 2 1 3 24 24 O 1.21283 * 120.00392 * 92.02147 * 23 2 1 25 25 N 1.34780 * 120.00147 * 272.02045 * 23 2 1 26 26 C 1.47023 * 125.64566 * 4.58916 * 25 23 2 27 27 C 1.54318 * 107.27569 * 180.97063 * 26 25 23 28 28 C 1.55157 * 102.86204 * 22.52647 * 27 26 25 29 29 C 1.47423 * 125.65075 * 184.90062 * 25 23 2 30 30 H 1.09002 * 109.46629 * 305.44952 * 1 2 3 31 31 H 1.08992 * 109.46925 * 65.44464 * 1 2 3 32 32 H 1.08998 * 109.47402 * 185.44996 * 1 2 3 33 33 H 0.97003 * 120.00123 * 265.00050 * 4 2 1 34 34 H 0.97001 * 120.00472 * 355.22283 * 12 11 9 35 35 H 1.07997 * 120.00461 * 0.02562 * 18 17 7 36 36 H 1.08008 * 119.99948 * 180.27207 * 19 18 17 37 37 H 1.08002 * 120.00583 * 179.83375 * 20 19 18 38 38 H 1.08000 * 120.00001 * 180.02562 * 21 20 19 39 39 H 1.07997 * 120.00342 * 359.97438 * 22 17 7 40 40 H 1.09003 * 109.88058 * 300.51061 * 26 25 23 41 41 H 1.08995 * 109.88293 * 61.67440 * 26 25 23 42 42 H 1.08996 * 110.91814 * 264.11031 * 27 26 25 43 43 H 1.09004 * 110.58672 * 140.78449 * 27 26 25 44 44 H 1.09001 * 110.99727 * 206.22951 * 28 27 26 45 45 H 1.08997 * 111.00552 * 82.38084 * 28 27 26 46 46 H 1.09004 * 110.36204 * 274.66937 * 29 25 23 47 47 H 1.08995 * 110.36779 * 36.87893 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0185 -2.3571 6 8 1.8583 1.1582 -2.4117 7 6 2.6499 -0.7288 -3.5874 8 1 1.9777 -1.5512 -3.8324 9 6 4.0315 -1.2706 -3.3252 10 1 4.6697 -0.7928 -2.5965 11 6 4.4810 -2.3762 -4.0156 12 7 3.7493 -2.8921 -4.9789 13 14 6.1257 -3.1459 -3.5775 14 1 7.1982 -2.5181 -4.3904 15 1 6.4058 -2.9280 -2.1355 16 1 6.0806 -4.6034 -3.8583 17 6 2.7000 0.2392 -4.7412 18 6 3.5909 1.2959 -4.7186 19 6 3.6399 2.1813 -5.7791 20 6 2.7917 2.0155 -6.8578 21 6 1.8972 0.9617 -6.8780 22 6 1.8511 0.0737 -5.8196 23 6 2.0323 -0.7104 1.2305 24 8 2.2694 -1.8991 1.1902 25 7 2.2181 -0.0247 2.3759 26 6 1.8826 1.3905 2.5914 27 6 2.2920 1.7435 4.0368 28 6 3.3595 0.6669 4.3662 29 6 2.7973 -0.5676 3.6181 30 1 -0.3633 0.5961 0.8372 31 1 -0.3633 0.4270 -0.9347 32 1 -0.3634 -1.0230 0.0976 33 1 2.2490 -1.6319 -1.1525 34 1 2.8638 -2.5387 -5.1578 35 1 4.2514 1.4275 -3.8743 36 1 4.3391 3.0045 -5.7634 37 1 2.8281 2.7088 -7.6851 38 1 1.2347 0.8319 -7.7210 39 1 1.1523 -0.7495 -5.8354 40 1 2.4325 2.0133 1.8858 41 1 0.8106 1.5407 2.4644 42 1 1.4410 1.6625 4.7130 43 1 2.7259 2.7426 4.0790 44 1 3.4109 0.4834 5.4394 45 1 4.3354 0.9511 3.9728 46 1 2.0261 -1.0543 4.2151 47 1 3.5977 -1.2707 3.3878 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361426863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:18 Heat of formation + Delta-G solvation = -75.158855 kcal Electronic energy + Delta-G solvation = -28655.410933 eV Core-core repulsion = 24801.580029 eV Total energy + Delta-G solvation = -3853.830904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.67165 -40.76933 -39.47557 -38.48757 -36.02920 -35.88316 -33.09863 -32.66802 -31.64211 -31.46145 -29.93712 -28.81713 -26.27943 -25.61825 -23.98075 -23.27066 -22.51221 -22.02803 -21.24775 -20.49674 -19.42229 -18.46435 -17.87525 -17.52249 -17.37712 -17.01886 -16.36680 -16.09296 -15.79729 -15.69107 -15.39480 -15.28359 -14.80906 -14.54390 -14.35057 -14.25980 -14.07739 -13.94701 -13.87276 -13.74151 -13.35223 -13.24718 -13.23554 -12.91065 -12.74757 -12.61569 -12.21468 -12.17223 -12.00386 -11.93613 -11.80075 -11.61430 -11.11236 -10.95900 -10.70418 -10.57986 -10.17053 -9.79951 -9.65501 -9.35712 -8.66365 -6.41257 0.65170 0.70222 1.26729 1.50398 1.58946 1.65924 1.76217 1.80079 2.40197 2.52912 3.06694 3.19595 3.22532 3.62585 3.75953 3.87657 3.94854 4.05966 4.09904 4.21277 4.24194 4.26536 4.35882 4.38289 4.43940 4.52690 4.60392 4.63822 4.66165 4.81312 4.83289 4.89586 4.91568 4.94740 5.02852 5.09393 5.20672 5.24620 5.31434 5.33473 5.41951 5.67827 5.71273 5.72253 6.02712 6.11756 6.26719 6.30312 6.47037 6.56045 6.87714 7.29072 7.36046 8.72911 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.003818 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.503206 B = 7332.626431 C = 8668.207977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.129 3.871 3 H 0.103 0.897 4 N -0.712 5.712 5 C 0.539 3.461 6 O -0.578 6.578 7 C 0.043 3.957 8 H 0.047 0.953 9 C -0.589 4.589 10 H 0.043 0.957 11 C -0.009 4.009 12 N -0.918 5.918 13 Si 1.109 2.891 14 H -0.276 1.276 15 H -0.277 1.277 16 H -0.280 1.280 17 C -0.044 4.044 18 C -0.106 4.106 19 C -0.132 4.132 20 C -0.139 4.139 21 C -0.126 4.126 22 C -0.149 4.149 23 C 0.526 3.474 24 O -0.572 6.572 25 N -0.616 5.616 26 C 0.082 3.918 27 C -0.120 4.120 28 C -0.125 4.125 29 C 0.095 3.905 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.408 0.592 34 H 0.265 0.735 35 H 0.093 0.907 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.071 0.929 46 H 0.079 0.921 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.624 10.718 15.374 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.021 3.979 3 H 0.120 0.880 4 N -0.365 5.365 5 C 0.329 3.671 6 O -0.458 6.458 7 C 0.022 3.978 8 H 0.065 0.935 9 C -0.627 4.627 10 H 0.062 0.938 11 C -0.211 4.211 12 N -0.554 5.554 13 Si 0.932 3.068 14 H -0.202 1.202 15 H -0.202 1.202 16 H -0.205 1.205 17 C -0.045 4.045 18 C -0.124 4.124 19 C -0.150 4.150 20 C -0.157 4.157 21 C -0.144 4.144 22 C -0.168 4.168 23 C 0.314 3.686 24 O -0.451 6.451 25 N -0.349 5.349 26 C -0.040 4.040 27 C -0.158 4.158 28 C -0.163 4.163 29 C -0.027 4.027 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.244 0.756 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.125 0.875 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.129 0.871 45 H 0.090 0.910 46 H 0.097 0.903 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.676 9.699 14.839 18.105 hybrid contribution -0.897 0.253 0.234 0.961 sum -4.573 9.952 15.073 18.632 Atomic orbital electron populations 1.22014 0.91186 1.03196 1.03982 1.20809 0.97034 0.97208 0.82843 0.87962 1.45797 1.67434 1.14861 1.08363 1.21036 0.74445 0.86503 0.85164 1.90543 1.52212 1.16994 1.86067 1.18078 0.98147 0.93210 0.88378 0.93520 1.21616 0.99239 1.15137 1.26685 0.93831 1.26975 1.07153 0.94734 0.92193 1.70843 1.11603 1.45015 1.27906 0.83006 0.71583 0.76014 0.76192 1.20192 1.20210 1.20501 1.20076 0.94100 0.94410 0.95921 1.20801 0.98085 0.95159 0.98351 1.21356 1.00166 0.99472 0.94033 1.21321 0.96501 0.98899 0.98965 1.21316 0.99836 0.95094 0.98154 1.21150 0.99842 1.00285 0.95483 1.20400 0.77294 0.86608 0.84285 1.90698 1.53147 1.16592 1.84689 1.48569 1.61600 1.13319 1.11448 1.22488 1.01942 0.79841 0.99725 1.22663 0.99676 1.00173 0.93239 1.22802 0.98738 0.93078 1.01708 1.22474 0.97912 0.98000 0.84316 0.88197 0.91917 0.92111 0.75569 0.92442 0.88887 0.84362 0.83150 0.83932 0.87461 0.91369 0.89401 0.88510 0.88003 0.87084 0.91032 0.90267 0.92489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.47 71.98 0.68 -3.27 16 2 C 0.13 4.27 2.49 44.25 0.11 4.38 16 3 H 0.10 3.35 6.59 -2.39 -0.02 3.34 16 4 N -0.71 -29.67 4.96 -446.11 -2.21 -31.88 16 5 C 0.54 25.41 7.01 87.66 0.61 26.03 16 6 O -0.58 -28.20 15.10 -3.05 -0.05 -28.24 16 7 C 0.04 2.21 1.95 -13.03 -0.03 2.18 16 8 H 0.05 2.52 6.59 -2.39 -0.02 2.50 16 9 C -0.59 -32.19 7.45 25.60 0.19 -32.00 16 10 H 0.04 2.44 7.82 -2.91 -0.02 2.42 16 11 C -0.01 -0.49 5.45 84.66 0.46 -0.03 16 12 N -0.92 -53.81 13.63 21.45 0.29 -53.52 16 13 Si 1.11 50.43 29.91 68.60 2.05 52.48 16 14 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 17 C -0.04 -2.16 4.20 -19.87 -0.08 -2.24 16 18 C -0.11 -4.93 8.33 22.27 0.19 -4.74 16 19 C -0.13 -5.07 10.05 22.27 0.22 -4.85 16 20 C -0.14 -4.79 10.05 22.27 0.22 -4.56 16 21 C -0.13 -4.67 10.05 22.27 0.22 -4.44 16 22 C -0.15 -6.64 9.58 22.27 0.21 -6.43 16 23 C 0.53 17.16 7.03 87.66 0.62 17.78 16 24 O -0.57 -23.17 16.35 -3.04 -0.05 -23.22 16 25 N -0.62 -14.74 3.33 -811.80 -2.70 -17.45 16 26 C 0.08 1.29 6.27 86.73 0.54 1.84 16 27 C -0.12 -1.10 6.95 31.78 0.22 -0.88 16 28 C -0.13 -1.45 7.08 31.99 0.23 -1.22 16 29 C 0.09 1.85 6.89 86.86 0.60 2.45 16 30 H 0.10 1.95 7.45 -2.39 -0.02 1.94 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.41 18.10 7.71 -92.71 -0.71 17.39 16 34 H 0.26 15.52 6.56 -92.71 -0.61 14.91 16 35 H 0.09 4.54 7.88 -2.91 -0.02 4.52 16 36 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.15 3.87 8.06 -2.91 -0.02 3.84 16 38 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.11 4.63 7.96 -2.91 -0.02 4.61 16 40 H 0.07 1.17 7.67 -2.39 -0.02 1.15 16 41 H 0.09 1.13 7.45 -2.39 -0.02 1.11 16 42 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.06 1.36 8.08 -2.39 -0.02 1.34 16 Total: -1.00 -74.01 387.82 2.98 -71.03 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: 0.42 Total: 40.82 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 5.23 Total: -10.02 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.62 Total: -102.85 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.10 Total: -51.46 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.05 Total: 52.48 kcal Total: -74.01 2.98 -71.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361426863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.129 kcal (2) G-P(sol) polarization free energy of solvation -74.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds