Wall clock time and date at job start Tue Mar 31 2020 16:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47347 * 2 1 4 4 C 1.46121 * 117.87701 * 270.04897 * 3 2 1 5 5 C 1.52923 * 110.29010 * 160.98775 * 4 3 2 6 6 C 1.53341 * 108.81219 * 50.68904 * 5 4 3 7 7 C 1.53067 * 108.42651 * 292.39258 * 6 5 4 8 8 H 1.09006 * 109.40070 * 288.77250 * 7 6 5 9 9 N 1.46503 * 109.40497 * 169.02874 * 7 6 5 10 10 C 1.34772 * 120.00454 * 154.99798 * 9 7 6 11 11 O 1.21289 * 119.99825 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00272 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.46437 * 321.82616 * 12 10 9 14 14 C 1.50702 * 109.46997 * 81.82129 * 12 10 9 15 15 H 1.08003 * 119.99899 * 54.38902 * 14 12 10 16 16 C 1.37866 * 119.99999 * 234.38219 * 14 12 10 17 17 N 1.31519 * 120.00024 * 172.38242 * 16 14 12 18 18 Si 1.86800 * 120.00390 * 352.37911 * 16 14 12 19 19 H 1.48500 * 109.47217 * 83.59607 * 18 16 14 20 20 H 1.48494 * 109.47466 * 203.60099 * 18 16 14 21 21 H 1.48501 * 109.46913 * 323.60275 * 18 16 14 22 22 C 1.50699 * 109.46858 * 201.82420 * 12 10 9 23 23 C 1.38232 * 120.00077 * 292.61272 * 22 12 10 24 24 C 1.38237 * 119.99870 * 179.81714 * 23 22 12 25 25 C 1.38232 * 120.00108 * 0.41332 * 24 23 22 26 26 C 1.38243 * 120.00001 * 359.81817 * 25 24 23 27 27 C 1.38231 * 119.99909 * 112.89244 * 22 12 10 28 28 C 1.33348 * 117.94646 * 89.99703 * 3 2 1 29 29 O 1.21281 * 118.24746 * 2.25077 * 28 3 2 30 30 H 1.09005 * 109.47535 * 59.99579 * 1 2 3 31 31 H 1.08996 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46982 * 300.00250 * 1 2 3 33 33 H 1.09004 * 109.46930 * 240.00279 * 2 1 3 34 34 H 1.08993 * 109.47226 * 120.00147 * 2 1 3 35 35 H 1.08996 * 109.51607 * 40.65657 * 4 3 2 36 36 H 1.09005 * 109.28524 * 281.16049 * 4 3 2 37 37 H 1.09004 * 109.59723 * 290.85470 * 5 4 3 38 38 H 1.08996 * 109.60301 * 170.53626 * 5 4 3 39 39 H 1.08998 * 109.67225 * 52.12278 * 6 5 4 40 40 H 1.08999 * 109.67280 * 172.65654 * 6 5 4 41 41 H 0.96998 * 119.99655 * 334.99973 * 9 7 6 42 42 H 0.97004 * 119.99734 * 180.02562 * 17 16 14 43 43 H 1.08002 * 120.00126 * 0.02562 * 23 22 12 44 44 H 1.08000 * 120.00060 * 180.21119 * 24 23 22 45 45 H 1.07996 * 120.00183 * 179.79438 * 25 24 23 46 46 H 1.07993 * 119.99946 * 179.97438 * 26 25 24 47 47 H 1.08007 * 119.99806 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2451 2.0257 -1.2916 5 6 2.2870 3.5454 -1.1259 6 6 3.2667 3.8931 0.0013 7 6 2.6789 3.3951 1.3240 8 1 1.8283 4.0185 1.5997 9 7 3.6997 3.4766 2.3716 10 6 3.3322 3.5871 3.6636 11 8 2.1563 3.6194 3.9589 12 6 4.3823 3.6716 4.7412 13 1 5.2113 3.0088 4.4933 14 6 4.8852 5.0886 4.8425 15 1 4.1878 5.8997 4.9921 16 6 6.2353 5.3496 4.7444 17 7 6.6621 6.5921 4.6822 18 14 7.4587 3.9387 4.7001 19 1 7.5718 3.4250 3.3114 20 1 8.7862 4.4198 5.1596 21 1 6.9904 2.8493 5.5941 22 6 3.7833 3.2555 6.0599 23 6 2.8148 4.0402 6.6574 24 6 2.2627 3.6565 7.8653 25 6 2.6852 2.4926 8.4797 26 6 3.6572 1.7103 7.8845 27 6 4.2066 2.0921 6.6749 28 6 2.2266 1.9704 1.1780 29 8 2.0414 1.3210 2.1853 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.4406 1.7601 -1.9774 36 1 3.1939 1.6821 -1.7039 37 1 1.2926 3.9131 -0.8725 38 1 2.6210 4.0056 -2.0558 39 1 4.2242 3.4054 -0.1814 40 1 3.4069 4.9731 0.0455 41 1 4.6401 3.4512 2.1354 42 1 7.6121 6.7757 4.6128 43 1 2.4871 4.9513 6.1790 44 1 1.5035 4.2678 8.3305 45 1 2.2562 2.1946 9.4250 46 1 3.9875 0.8012 8.3648 47 1 4.9662 1.4811 6.2100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361534626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:06 Heat of formation + Delta-G solvation = -48.769415 kcal Electronic energy + Delta-G solvation = -29167.883895 eV Core-core repulsion = 25315.197323 eV Total energy + Delta-G solvation = -3852.686572 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65497 -39.05080 -37.74201 -36.41212 -35.23352 -33.55402 -32.72794 -31.48734 -30.08632 -30.04404 -28.92993 -27.49615 -24.71826 -23.82391 -23.06651 -21.85373 -21.76026 -20.93351 -19.36284 -18.68514 -17.17620 -16.82014 -16.52386 -16.26550 -16.07671 -15.80480 -14.71892 -14.59800 -14.51934 -14.21898 -13.86985 -13.80338 -13.69999 -13.52968 -13.06997 -12.89743 -12.67147 -12.57778 -12.52745 -12.11805 -12.01353 -11.87611 -11.71773 -11.59778 -11.38352 -11.12862 -11.09122 -11.03793 -10.90958 -10.41880 -10.09904 -9.98465 -9.73831 -9.47674 -8.97689 -8.71358 -8.63573 -8.38943 -8.04435 -7.73411 -6.29887 -4.31181 2.22883 2.29740 2.78533 2.93524 3.10529 3.24167 3.27814 3.76434 3.91376 4.21617 4.55163 4.59211 4.64472 4.68095 4.78079 5.01409 5.06817 5.10063 5.20286 5.25745 5.34634 5.38542 5.57818 5.61930 5.63249 5.64802 5.67632 5.79529 5.86657 5.94121 5.98174 6.05824 6.09146 6.21551 6.27642 6.42997 6.46679 6.48683 6.81760 6.93659 7.00751 7.25094 7.31434 7.34692 7.50903 7.67238 7.87537 8.16564 8.33264 8.38175 8.74666 9.21993 9.28589 10.81506 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.004565 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.667177 B = 6131.977046 C = 7617.059962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.103 3.897 3 N -0.611 5.611 4 C 0.115 3.885 5 C -0.132 4.132 6 C -0.131 4.131 7 C 0.141 3.859 8 H 0.114 0.886 9 N -0.720 5.720 10 C 0.541 3.459 11 O -0.543 6.543 12 C 0.035 3.965 13 H 0.057 0.943 14 C -0.504 4.504 15 H 0.084 0.916 16 C 0.083 3.917 17 N -0.881 5.881 18 Si 0.865 3.135 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.029 4.029 23 C -0.069 4.069 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.131 4.131 27 C -0.131 4.131 28 C 0.499 3.501 29 O -0.520 6.520 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.401 0.599 42 H 0.269 0.731 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.109 0.891 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.259 -9.295 -12.598 16.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.347 5.347 4 C -0.008 4.008 5 C -0.170 4.170 6 C -0.169 4.169 7 C 0.032 3.968 8 H 0.132 0.868 9 N -0.373 5.373 10 C 0.330 3.670 11 O -0.418 6.418 12 C 0.014 3.986 13 H 0.075 0.925 14 C -0.542 4.542 15 H 0.102 0.898 16 C -0.121 4.121 17 N -0.517 5.517 18 Si 0.691 3.309 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.030 4.030 23 C -0.087 4.087 24 C -0.150 4.150 25 C -0.160 4.160 26 C -0.149 4.149 27 C -0.149 4.149 28 C 0.285 3.715 29 O -0.394 6.394 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.235 0.765 42 H 0.079 0.921 43 H 0.138 0.862 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.021 -9.441 -11.804 16.666 hybrid contribution 1.269 -0.645 -0.291 1.453 sum -5.752 -10.086 -12.095 16.766 Atomic orbital electron populations 1.22090 0.96022 1.01987 1.02260 1.21411 0.94421 0.83109 1.03005 1.47589 1.66880 1.14354 1.05881 1.21442 1.01360 0.93164 0.84838 1.21839 1.00819 0.94668 0.99703 1.21960 0.99204 1.03216 0.92539 1.20608 0.94837 0.92310 0.89094 0.86840 1.45770 1.08513 1.77272 1.05777 1.21387 0.90609 0.72144 0.82837 1.90579 1.19582 1.49512 1.82166 1.18307 0.92977 0.99582 0.87770 0.92466 1.20552 0.93343 0.88978 1.51302 0.89777 1.25023 0.97929 0.95509 0.93689 1.69874 1.15477 1.18498 1.47850 0.87026 0.81189 0.83443 0.79243 1.19781 1.20922 1.18418 1.19945 0.94113 0.92336 0.96647 1.20900 0.94903 0.99085 0.93801 1.21036 1.00543 0.97106 0.96320 1.20863 0.99118 0.96212 0.99838 1.20866 0.98250 0.99594 0.96203 1.20991 1.00775 0.96853 0.96290 1.20928 0.77542 0.90289 0.82736 1.90747 1.49700 1.63496 1.35471 0.92847 0.91827 0.92080 0.91000 0.89630 0.90832 0.91819 0.90651 0.89330 0.90610 0.89374 0.76483 0.92119 0.86179 0.87143 0.87386 0.87317 0.87355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 10.23 37.16 0.38 -1.30 16 2 C 0.10 1.14 5.94 -4.04 -0.02 1.11 16 3 N -0.61 -7.44 2.82 -174.67 -0.49 -7.93 16 4 C 0.11 0.93 6.35 -4.29 -0.03 0.90 16 5 C -0.13 -1.05 6.01 -26.59 -0.16 -1.21 16 6 C -0.13 -1.43 5.51 -26.52 -0.15 -1.58 16 7 C 0.14 2.24 2.70 -69.30 -0.19 2.05 16 8 H 0.11 1.97 7.58 -51.93 -0.39 1.58 16 9 N -0.72 -13.77 4.97 -55.14 -0.27 -14.04 16 10 C 0.54 12.53 6.36 -10.99 -0.07 12.46 16 11 O -0.54 -13.84 14.40 3.74 0.05 -13.79 16 12 C 0.04 0.85 2.20 -94.07 -0.21 0.64 16 13 H 0.06 1.32 4.73 -51.93 -0.25 1.08 16 14 C -0.50 -13.39 8.24 -34.44 -0.28 -13.67 16 15 H 0.08 2.48 7.72 -52.48 -0.41 2.07 16 16 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 17 N -0.88 -24.96 13.96 55.43 0.77 -24.18 16 18 Si 0.86 19.78 26.84 -169.99 -4.56 15.22 16 19 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.26 -5.87 6.96 56.52 0.39 -5.47 16 22 C -0.03 -0.70 4.52 -104.63 -0.47 -1.17 16 23 C -0.07 -1.58 8.04 -39.58 -0.32 -1.90 16 24 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16 25 C -0.14 -2.61 10.05 -39.58 -0.40 -3.01 16 26 C -0.13 -2.49 10.05 -39.58 -0.40 -2.88 16 27 C -0.13 -2.82 9.67 -39.59 -0.38 -3.20 16 28 C 0.50 8.25 7.19 -11.87 -0.09 8.17 16 29 O -0.52 -11.05 14.92 3.75 0.06 -10.99 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.58 8.01 -51.93 -0.42 0.17 16 34 H 0.09 1.15 7.13 -51.93 -0.37 0.78 16 35 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 38 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.40 7.04 8.58 -40.82 -0.35 6.69 16 42 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.12 2.86 7.46 -52.49 -0.39 2.47 16 44 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 46 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 47 H 0.11 2.19 7.96 -52.48 -0.42 1.77 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -34.21 382.49 -9.16 -43.37 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -7.20 Total: 12.06 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.27 Total: -5.48 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 0.01 Total: -46.15 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: 0.11 Total: -24.78 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.56 Total: 15.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.21 -9.16 -43.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361534626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.399 kcal (2) G-P(sol) polarization free energy of solvation -34.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds