Wall clock time and date at job start Tue Mar 31 2020 16:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47347 * 2 1 4 4 C 1.46121 * 117.87701 * 270.04897 * 3 2 1 5 5 C 1.52923 * 110.29010 * 160.98775 * 4 3 2 6 6 C 1.53341 * 108.81219 * 50.68904 * 5 4 3 7 7 C 1.53067 * 108.42651 * 292.39258 * 6 5 4 8 8 H 1.09006 * 109.40070 * 288.77250 * 7 6 5 9 9 N 1.46503 * 109.40497 * 169.02874 * 7 6 5 10 10 C 1.34772 * 120.00454 * 154.99798 * 9 7 6 11 11 O 1.21289 * 119.99825 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00272 * 180.02562 * 10 9 7 13 13 H 1.08996 * 109.46437 * 321.82616 * 12 10 9 14 14 C 1.50702 * 109.46997 * 81.82129 * 12 10 9 15 15 H 1.08003 * 119.99899 * 54.38902 * 14 12 10 16 16 C 1.37866 * 119.99999 * 234.38219 * 14 12 10 17 17 N 1.31519 * 120.00024 * 172.38242 * 16 14 12 18 18 Si 1.86800 * 120.00390 * 352.37911 * 16 14 12 19 19 H 1.48500 * 109.47217 * 83.59607 * 18 16 14 20 20 H 1.48494 * 109.47466 * 203.60099 * 18 16 14 21 21 H 1.48501 * 109.46913 * 323.60275 * 18 16 14 22 22 C 1.50699 * 109.46858 * 201.82420 * 12 10 9 23 23 C 1.38232 * 120.00077 * 292.61272 * 22 12 10 24 24 C 1.38237 * 119.99870 * 179.81714 * 23 22 12 25 25 C 1.38232 * 120.00108 * 0.41332 * 24 23 22 26 26 C 1.38243 * 120.00001 * 359.81817 * 25 24 23 27 27 C 1.38231 * 119.99909 * 112.89244 * 22 12 10 28 28 C 1.33348 * 117.94646 * 89.99703 * 3 2 1 29 29 O 1.21281 * 118.24746 * 2.25077 * 28 3 2 30 30 H 1.09005 * 109.47535 * 59.99579 * 1 2 3 31 31 H 1.08996 * 109.47341 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46982 * 300.00250 * 1 2 3 33 33 H 1.09004 * 109.46930 * 240.00279 * 2 1 3 34 34 H 1.08993 * 109.47226 * 120.00147 * 2 1 3 35 35 H 1.08996 * 109.51607 * 40.65657 * 4 3 2 36 36 H 1.09005 * 109.28524 * 281.16049 * 4 3 2 37 37 H 1.09004 * 109.59723 * 290.85470 * 5 4 3 38 38 H 1.08996 * 109.60301 * 170.53626 * 5 4 3 39 39 H 1.08998 * 109.67225 * 52.12278 * 6 5 4 40 40 H 1.08999 * 109.67280 * 172.65654 * 6 5 4 41 41 H 0.96998 * 119.99655 * 334.99973 * 9 7 6 42 42 H 0.97004 * 119.99734 * 180.02562 * 17 16 14 43 43 H 1.08002 * 120.00126 * 0.02562 * 23 22 12 44 44 H 1.08000 * 120.00060 * 180.21119 * 24 23 22 45 45 H 1.07996 * 120.00183 * 179.79438 * 25 24 23 46 46 H 1.07993 * 119.99946 * 179.97438 * 26 25 24 47 47 H 1.08007 * 119.99806 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2451 2.0257 -1.2916 5 6 2.2870 3.5454 -1.1259 6 6 3.2667 3.8931 0.0013 7 6 2.6789 3.3951 1.3240 8 1 1.8283 4.0185 1.5997 9 7 3.6997 3.4766 2.3716 10 6 3.3322 3.5871 3.6636 11 8 2.1563 3.6194 3.9589 12 6 4.3823 3.6716 4.7412 13 1 5.2113 3.0088 4.4933 14 6 4.8852 5.0886 4.8425 15 1 4.1878 5.8997 4.9921 16 6 6.2353 5.3496 4.7444 17 7 6.6621 6.5921 4.6822 18 14 7.4587 3.9387 4.7001 19 1 7.5718 3.4250 3.3114 20 1 8.7862 4.4198 5.1596 21 1 6.9904 2.8493 5.5941 22 6 3.7833 3.2555 6.0599 23 6 2.8148 4.0402 6.6574 24 6 2.2627 3.6565 7.8653 25 6 2.6852 2.4926 8.4797 26 6 3.6572 1.7103 7.8845 27 6 4.2066 2.0921 6.6749 28 6 2.2266 1.9704 1.1780 29 8 2.0414 1.3210 2.1853 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.4406 1.7601 -1.9774 36 1 3.1939 1.6821 -1.7039 37 1 1.2926 3.9131 -0.8725 38 1 2.6210 4.0056 -2.0558 39 1 4.2242 3.4054 -0.1814 40 1 3.4069 4.9731 0.0455 41 1 4.6401 3.4512 2.1354 42 1 7.6121 6.7757 4.6128 43 1 2.4871 4.9513 6.1790 44 1 1.5035 4.2678 8.3305 45 1 2.2562 2.1946 9.4250 46 1 3.9875 0.8012 8.3648 47 1 4.9662 1.4811 6.2100 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361534626.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:05 Heat of formation + Delta-G solvation = -71.845876 kcal Electronic energy + Delta-G solvation = -29168.884566 eV Core-core repulsion = 25315.197323 eV Total energy + Delta-G solvation = -3853.687242 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89450 -40.69173 -39.34763 -37.54387 -36.50503 -35.51218 -33.99890 -33.35004 -31.65310 -31.03027 -30.19751 -29.11555 -25.91757 -25.33280 -24.32474 -23.39093 -22.78241 -22.51471 -21.03093 -19.80334 -19.11716 -18.10810 -17.89097 -17.66596 -17.54177 -17.22283 -16.40628 -15.98355 -15.79328 -15.50222 -15.27988 -15.03915 -14.82140 -14.78239 -14.68713 -14.42972 -14.25058 -14.14834 -13.76740 -13.44511 -13.38717 -13.09675 -12.92549 -12.83976 -12.76915 -12.51411 -12.24587 -12.09809 -11.96681 -11.92861 -11.82749 -11.71949 -11.44153 -11.11120 -10.91630 -10.56509 -9.92550 -9.69917 -9.66407 -9.39319 -8.37530 -6.44881 0.61151 0.68048 1.29164 1.37260 1.46281 1.49308 1.78980 2.09465 2.28097 2.48928 2.97498 3.13436 3.54501 3.63429 3.79913 3.97222 4.03642 4.14657 4.17812 4.20091 4.26521 4.31608 4.38122 4.42162 4.44112 4.49264 4.56798 4.63649 4.78581 4.81135 4.83943 4.86336 4.99909 5.03951 5.05805 5.18128 5.22387 5.27403 5.30457 5.36274 5.50072 5.56748 5.66742 5.71721 5.93130 6.17885 6.28415 6.42337 6.55931 6.62732 7.16924 7.18465 7.46446 8.77748 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011110 B = 0.004565 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.667177 B = 6131.977046 C = 7617.059962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.099 3.901 3 N -0.600 5.600 4 C 0.105 3.895 5 C -0.126 4.126 6 C -0.124 4.124 7 C 0.135 3.865 8 H 0.088 0.912 9 N -0.713 5.713 10 C 0.536 3.464 11 O -0.576 6.576 12 C 0.038 3.962 13 H 0.066 0.934 14 C -0.504 4.504 15 H 0.033 0.967 16 C 0.037 3.963 17 N -0.927 5.927 18 Si 0.924 3.076 19 H -0.242 1.242 20 H -0.281 1.281 21 H -0.254 1.254 22 C -0.063 4.063 23 C -0.100 4.100 24 C -0.135 4.135 25 C -0.134 4.134 26 C -0.125 4.125 27 C -0.149 4.149 28 C 0.495 3.505 29 O -0.580 6.580 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.021 0.979 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.408 0.592 42 H 0.273 0.727 43 H 0.088 0.912 44 H 0.135 0.865 45 H 0.153 0.847 46 H 0.150 0.850 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.589 -12.120 -14.511 19.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.023 4.023 3 N -0.333 5.333 4 C -0.015 4.015 5 C -0.163 4.163 6 C -0.162 4.162 7 C 0.026 3.974 8 H 0.106 0.894 9 N -0.365 5.365 10 C 0.325 3.675 11 O -0.455 6.455 12 C 0.017 3.983 13 H 0.084 0.916 14 C -0.542 4.542 15 H 0.052 0.948 16 C -0.163 4.163 17 N -0.564 5.564 18 Si 0.746 3.254 19 H -0.166 1.166 20 H -0.207 1.207 21 H -0.178 1.178 22 C -0.064 4.064 23 C -0.118 4.118 24 C -0.153 4.153 25 C -0.152 4.152 26 C -0.143 4.143 27 C -0.167 4.167 28 C 0.281 3.719 29 O -0.459 6.459 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.040 0.960 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.145 0.855 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.244 0.756 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.153 0.847 45 H 0.171 0.829 46 H 0.167 0.833 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.353 -12.273 -13.820 19.544 hybrid contribution 0.926 0.259 0.288 1.004 sum -5.427 -12.014 -13.532 18.892 Atomic orbital electron populations 1.22037 0.95366 1.02950 1.01324 1.21584 0.94956 0.82326 1.03465 1.47687 1.64766 1.14821 1.06074 1.21869 1.03927 0.92833 0.82913 1.21888 0.99665 0.95011 0.99778 1.21999 1.00436 1.03173 0.90588 1.20853 0.93644 0.92425 0.90469 0.89426 1.45664 1.09690 1.75794 1.05377 1.21288 0.89939 0.72126 0.84191 1.90541 1.20725 1.51250 1.82979 1.18228 0.93420 0.97758 0.88922 0.91640 1.20419 0.92930 0.89326 1.51513 0.94819 1.25777 0.99504 0.98115 0.92949 1.70004 1.16140 1.20861 1.49399 0.86069 0.78174 0.80124 0.81032 1.16551 1.20720 1.17799 1.20061 0.95471 0.94044 0.96823 1.20845 0.96497 0.98743 0.95723 1.21371 1.00619 0.98219 0.95126 1.21367 0.98098 0.94743 1.00953 1.21356 0.97290 1.00683 0.94967 1.21247 1.01538 0.96352 0.97606 1.20917 0.77408 0.90098 0.83460 1.90718 1.52663 1.64754 1.37808 0.90625 0.90013 0.95992 0.86783 0.92789 0.87636 0.89350 0.91211 0.85533 0.89212 0.89355 0.75619 0.91780 0.89336 0.84671 0.82930 0.83252 0.86334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.23 71.98 0.74 -2.26 16 2 C 0.10 2.01 5.94 86.38 0.51 2.52 16 3 N -0.60 -13.64 2.82 -825.72 -2.33 -15.97 16 4 C 0.11 1.27 6.35 86.43 0.55 1.82 16 5 C -0.13 -1.59 6.01 30.68 0.18 -1.40 16 6 C -0.12 -2.55 5.51 30.73 0.17 -2.38 16 7 C 0.13 4.44 2.70 44.10 0.12 4.56 16 8 H 0.09 3.32 7.58 -2.38 -0.02 3.30 16 9 N -0.71 -28.56 4.97 -446.75 -2.22 -30.78 16 10 C 0.54 26.51 6.36 87.66 0.56 27.07 16 11 O -0.58 -31.89 14.40 -1.33 -0.02 -31.91 16 12 C 0.04 1.93 2.20 -13.03 -0.03 1.91 16 13 H 0.07 3.09 4.73 -2.39 -0.01 3.08 16 14 C -0.50 -28.59 8.24 25.60 0.21 -28.38 16 15 H 0.03 2.19 7.72 -2.91 -0.02 2.16 16 16 C 0.04 2.05 5.47 84.65 0.46 2.51 16 17 N -0.93 -54.62 13.96 21.44 0.30 -54.32 16 18 Si 0.92 40.77 26.84 68.60 1.84 42.61 16 19 H -0.24 -9.45 7.11 99.48 0.71 -8.74 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.25 -10.92 6.96 99.48 0.69 -10.23 16 22 C -0.06 -3.11 4.52 -19.87 -0.09 -3.20 16 23 C -0.10 -4.86 8.04 22.27 0.18 -4.68 16 24 C -0.14 -5.38 10.05 22.27 0.22 -5.16 16 25 C -0.13 -4.58 10.05 22.27 0.22 -4.36 16 26 C -0.13 -4.45 10.05 22.27 0.22 -4.22 16 27 C -0.15 -6.39 9.67 22.27 0.22 -6.17 16 28 C 0.49 16.75 7.19 87.72 0.63 17.38 16 29 O -0.58 -26.05 14.92 -1.30 -0.02 -26.07 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.11 1.38 8.01 -2.38 -0.02 1.36 16 34 H 0.05 1.46 7.13 -2.39 -0.02 1.45 16 35 H 0.11 0.72 8.11 -2.39 -0.02 0.71 16 36 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.07 1.00 8.12 -2.38 -0.02 0.98 16 38 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 40 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.41 14.64 8.58 -92.71 -0.80 13.85 16 42 H 0.27 14.91 8.31 -92.71 -0.77 14.13 16 43 H 0.09 4.72 7.46 -2.91 -0.02 4.70 16 44 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 45 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 46 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 47 H 0.12 4.69 7.96 -2.91 -0.02 4.66 16 Total: -1.00 -83.78 382.49 2.80 -80.98 By element: Atomic # 1 Polarization: 39.76 SS G_CDS: 0.16 Total: 39.92 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.08 Total: -4.46 kcal Atomic # 7 Polarization: -96.83 SS G_CDS: -4.25 Total: -101.08 kcal Atomic # 8 Polarization: -57.94 SS G_CDS: -0.04 Total: -57.98 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.84 Total: 42.61 kcal Total: -83.78 2.80 -80.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361534626.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.139 kcal (2) G-P(sol) polarization free energy of solvation -83.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds