Wall clock time and date at job start Tue Mar 31 2020 16:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47422 * 2 1 4 4 C 1.45753 * 117.94305 * 89.99685 * 3 2 1 5 5 C 1.52921 * 110.48639 * 199.07497 * 4 3 2 6 6 C 1.53341 * 108.67498 * 309.25537 * 5 4 3 7 7 C 1.53067 * 108.42838 * 67.53098 * 6 5 4 8 8 H 1.08999 * 109.40466 * 71.13969 * 7 6 5 9 9 N 1.46499 * 109.40038 * 190.97159 * 7 6 5 10 10 C 1.34786 * 119.99718 * 204.99783 * 9 7 6 11 11 O 1.21278 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99563 * 179.97438 * 10 9 7 13 13 H 1.08996 * 109.47361 * 299.99654 * 12 10 9 14 14 C 1.50702 * 109.47250 * 60.00218 * 12 10 9 15 15 H 1.08001 * 119.99771 * 235.43557 * 14 12 10 16 16 C 1.37876 * 119.99979 * 55.42890 * 14 12 10 17 17 N 1.31510 * 120.00346 * 2.19378 * 16 14 12 18 18 Si 1.86808 * 119.99823 * 182.18802 * 16 14 12 19 19 H 1.48499 * 109.46643 * 60.00269 * 18 16 14 20 20 H 1.48495 * 109.46852 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46898 * 300.00282 * 18 16 14 22 22 C 1.50698 * 109.46899 * 179.97438 * 12 10 9 23 23 C 1.38236 * 120.00071 * 226.73683 * 22 12 10 24 24 C 1.38232 * 119.99997 * 180.34350 * 23 22 12 25 25 C 1.38239 * 120.00113 * 359.91067 * 24 23 22 26 26 C 1.38234 * 119.99902 * 0.04293 * 25 24 23 27 27 C 1.38237 * 120.00165 * 0.02562 * 26 25 24 28 28 C 1.33351 * 117.94606 * 270.00549 * 3 2 1 29 29 O 1.21282 * 118.24637 * 357.77642 * 28 3 2 30 30 H 1.09004 * 109.46749 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46943 * 299.99644 * 1 2 3 32 32 H 1.08998 * 109.47336 * 59.99864 * 1 2 3 33 33 H 1.09005 * 109.46960 * 239.99803 * 2 1 3 34 34 H 1.08998 * 109.47336 * 120.00136 * 2 1 3 35 35 H 1.08998 * 109.29855 * 78.77050 * 4 3 2 36 36 H 1.09002 * 109.30445 * 319.39343 * 4 3 2 37 37 H 1.08994 * 109.60258 * 189.49207 * 5 4 3 38 38 H 1.09007 * 109.59935 * 69.00815 * 5 4 3 39 39 H 1.09000 * 109.67827 * 307.78969 * 6 5 4 40 40 H 1.09005 * 109.67442 * 187.26080 * 6 5 4 41 41 H 0.96999 * 120.00139 * 24.99482 * 9 7 6 42 42 H 0.96997 * 120.00490 * 180.02562 * 17 16 14 43 43 H 1.07996 * 120.00005 * 0.27953 * 23 22 12 44 44 H 1.08001 * 120.00245 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.00145 * 180.02562 * 25 24 23 46 46 H 1.08003 * 120.00051 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.00063 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2460 2.0252 1.2876 5 6 2.2870 3.5453 1.1260 6 6 3.2667 3.8929 -0.0013 7 6 2.6788 3.3951 -1.3240 8 1 1.8272 4.0175 -1.5988 9 7 3.6996 3.4767 -2.3716 10 6 3.3319 3.5872 -3.6636 11 8 2.1560 3.6186 -3.9588 12 6 4.3820 3.6718 -4.7412 13 1 5.0087 4.5470 -4.5700 14 6 5.2347 2.4296 -4.7103 15 1 6.3068 2.5129 -4.6103 16 6 4.6461 1.1867 -4.8095 17 7 3.3452 1.0865 -4.9744 18 14 5.6965 -0.3548 -4.7098 19 1 6.3965 -0.3929 -3.4007 20 1 4.8302 -1.5535 -4.8434 21 1 6.6976 -0.3434 -5.8064 22 6 3.7130 3.7878 -6.0865 23 6 4.1367 2.9988 -7.1395 24 6 3.5277 3.1103 -8.3754 25 6 2.4937 4.0096 -8.5579 26 6 2.0694 4.7979 -7.5047 27 6 2.6793 4.6874 -6.2690 28 6 2.2266 1.9704 -1.1780 29 8 2.0409 1.3211 -2.1854 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.1946 1.6811 1.6998 36 1 1.4410 1.7571 1.9719 37 1 2.6227 4.0030 2.0564 38 1 1.2926 3.9130 0.8727 39 1 4.2243 3.4054 0.1813 40 1 3.4069 4.9730 -0.0456 41 1 4.6400 3.4513 -2.1354 42 1 2.9310 0.2121 -5.0438 43 1 4.9442 2.2960 -6.9968 44 1 3.8590 2.4942 -9.1983 45 1 2.0176 4.0964 -9.5234 46 1 1.2613 5.5001 -7.6471 47 1 2.3480 5.3036 -5.4463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361534628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:14 Heat of formation + Delta-G solvation = -37.469967 kcal Electronic energy + Delta-G solvation = -29971.754647 eV Core-core repulsion = 26119.558056 eV Total energy + Delta-G solvation = -3852.196591 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.27131 -38.67104 -37.25370 -36.02873 -34.88038 -33.41923 -32.35672 -30.65637 -29.81673 -29.56541 -28.57844 -26.90640 -24.45720 -23.72670 -22.95871 -21.60532 -21.15480 -20.45499 -19.10673 -18.45037 -16.65377 -16.55469 -16.13528 -15.88265 -15.46848 -15.06339 -14.66403 -14.40753 -14.22286 -13.81315 -13.61017 -13.52721 -13.43292 -13.25351 -12.86263 -12.46067 -12.29941 -12.09326 -12.02323 -11.84331 -11.78449 -11.54780 -11.36886 -11.18003 -11.10227 -10.90903 -10.84377 -10.68347 -10.66527 -10.29466 -9.93771 -9.55386 -9.24782 -9.20365 -8.50607 -8.32390 -8.15967 -7.88143 -7.58213 -7.28007 -5.90279 -4.07596 2.64698 2.71702 3.23887 3.31487 3.32178 3.38373 3.40589 4.23047 4.36177 4.50667 4.72653 4.82869 4.90516 4.98265 5.14229 5.26751 5.33969 5.36742 5.41031 5.47874 5.57486 5.59479 5.74093 5.81759 5.84407 5.94015 5.99343 6.06883 6.14175 6.19503 6.20501 6.32982 6.49722 6.68545 6.77523 6.81445 6.91989 7.02276 7.24189 7.32058 7.49000 7.65044 7.75568 7.86795 7.91519 7.95475 8.27667 8.41645 8.71630 8.87219 8.95892 9.57976 9.84406 11.08606 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.004783 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.695757 B = 5852.279925 C = 6640.764791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.618 5.618 4 C 0.118 3.882 5 C -0.130 4.130 6 C -0.129 4.129 7 C 0.147 3.853 8 H 0.104 0.896 9 N -0.722 5.722 10 C 0.556 3.444 11 O -0.534 6.534 12 C 0.062 3.938 13 H 0.053 0.947 14 C -0.557 4.557 15 H 0.062 0.938 16 C 0.081 3.919 17 N -0.808 5.808 18 Si 0.881 3.119 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.278 1.278 22 C -0.011 4.011 23 C -0.064 4.064 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.101 4.101 28 C 0.483 3.517 29 O -0.476 6.476 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.397 0.603 42 H 0.265 0.735 43 H 0.128 0.872 44 H 0.100 0.900 45 H 0.098 0.902 46 H 0.099 0.901 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.949 4.152 12.547 13.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.356 5.356 4 C -0.006 4.006 5 C -0.168 4.168 6 C -0.167 4.167 7 C 0.037 3.963 8 H 0.121 0.879 9 N -0.375 5.375 10 C 0.345 3.655 11 O -0.408 6.408 12 C 0.040 3.960 13 H 0.071 0.929 14 C -0.595 4.595 15 H 0.080 0.920 16 C -0.131 4.131 17 N -0.438 5.438 18 Si 0.709 3.291 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.203 1.203 22 C -0.012 4.012 23 C -0.082 4.082 24 C -0.167 4.167 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.119 4.119 28 C 0.268 3.732 29 O -0.346 6.346 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.231 0.769 42 H 0.075 0.925 43 H 0.146 0.854 44 H 0.118 0.882 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.110 3.710 11.656 12.412 hybrid contribution 0.701 -1.384 0.438 1.612 sum -1.409 2.326 12.094 12.396 Atomic orbital electron populations 1.22073 0.96367 1.01667 1.02012 1.21321 0.94098 0.83529 1.02732 1.47538 1.68092 1.14224 1.05764 1.21261 1.00833 0.92975 0.85487 1.21808 1.00653 0.94984 0.99398 1.21938 0.99311 1.02188 0.93286 1.20464 0.94528 0.92565 0.88735 0.87870 1.45706 1.07892 1.78194 1.05749 1.21055 0.90356 0.71956 0.82090 1.90536 1.19949 1.48976 1.81363 1.17815 0.92391 0.97928 0.87816 0.92872 1.20475 0.92735 0.88997 1.57248 0.92006 1.24976 0.94747 0.98634 0.94694 1.69978 1.08007 1.24494 1.41284 0.86837 0.80291 0.83548 0.78383 1.20542 1.21524 1.20329 1.19850 0.93817 0.92177 0.95341 1.21152 0.99261 0.96769 0.90990 1.20984 0.98332 0.99753 0.97633 1.20748 0.98963 0.98841 0.97877 1.20802 1.00594 1.00935 0.94008 1.20969 0.96236 0.99211 0.95489 1.21015 0.78699 0.90653 0.82868 1.90928 1.46670 1.62551 1.34423 0.92147 0.93167 0.92072 0.89660 0.91547 0.92410 0.91421 0.89813 0.90902 0.90788 0.90287 0.76920 0.92454 0.85414 0.88171 0.88358 0.88259 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 10.23 37.16 0.38 -1.74 16 2 C 0.11 1.52 5.94 -4.04 -0.02 1.49 16 3 N -0.62 -9.23 2.81 -174.96 -0.49 -9.72 16 4 C 0.12 1.21 6.32 -4.49 -0.03 1.18 16 5 C -0.13 -1.19 6.02 -26.60 -0.16 -1.35 16 6 C -0.13 -1.48 5.50 -26.52 -0.15 -1.62 16 7 C 0.15 2.53 2.70 -69.30 -0.19 2.34 16 8 H 0.10 1.92 7.58 -51.93 -0.39 1.53 16 9 N -0.72 -14.39 4.87 -55.15 -0.27 -14.66 16 10 C 0.56 13.36 4.89 -10.98 -0.05 13.30 16 11 O -0.53 -14.56 13.13 3.68 0.05 -14.51 16 12 C 0.06 1.49 2.78 -94.08 -0.26 1.23 16 13 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 14 C -0.56 -14.07 7.11 -34.44 -0.24 -14.32 16 15 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 16 C 0.08 2.14 4.01 -17.82 -0.07 2.07 16 17 N -0.81 -23.20 10.90 55.43 0.60 -22.60 16 18 Si 0.88 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 C -0.01 -0.27 4.51 -104.62 -0.47 -0.74 16 23 C -0.06 -1.55 8.20 -39.58 -0.32 -1.87 16 24 C -0.15 -3.25 10.05 -39.58 -0.40 -3.65 16 25 C -0.15 -3.02 10.05 -39.58 -0.40 -3.42 16 26 C -0.15 -3.10 10.05 -39.58 -0.40 -3.50 16 27 C -0.10 -2.36 8.22 -39.58 -0.33 -2.69 16 28 C 0.48 9.35 7.19 -11.87 -0.09 9.27 16 29 O -0.48 -11.91 14.92 3.68 0.05 -11.86 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.51 7.13 -51.93 -0.37 1.14 16 34 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.40 7.21 8.47 -40.82 -0.35 6.87 16 42 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 43 H 0.13 3.22 6.04 -52.49 -0.32 2.90 16 44 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 45 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 46 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 47 H 0.11 2.44 6.98 -52.49 -0.37 2.07 16 LS Contribution 377.07 15.07 5.68 5.68 Total: -1.00 -34.11 377.07 -9.83 -43.95 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -7.25 Total: 11.61 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.20 Total: -4.01 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.16 Total: -46.98 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: 0.10 Total: -26.37 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.11 -9.83 -43.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361534628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.478 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds