Wall clock time and date at job start Tue Mar 31 2020 16:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.47422 * 2 1 4 4 C 1.45753 * 117.94305 * 89.99685 * 3 2 1 5 5 C 1.52921 * 110.48639 * 199.07497 * 4 3 2 6 6 C 1.53341 * 108.67498 * 309.25537 * 5 4 3 7 7 C 1.53067 * 108.42838 * 67.53098 * 6 5 4 8 8 H 1.08999 * 109.40466 * 71.13969 * 7 6 5 9 9 N 1.46499 * 109.40038 * 190.97159 * 7 6 5 10 10 C 1.34786 * 119.99718 * 204.99783 * 9 7 6 11 11 O 1.21278 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99563 * 179.97438 * 10 9 7 13 13 H 1.08996 * 109.47361 * 299.99654 * 12 10 9 14 14 C 1.50702 * 109.47250 * 60.00218 * 12 10 9 15 15 H 1.08001 * 119.99771 * 235.43557 * 14 12 10 16 16 C 1.37876 * 119.99979 * 55.42890 * 14 12 10 17 17 N 1.31510 * 120.00346 * 2.19378 * 16 14 12 18 18 Si 1.86808 * 119.99823 * 182.18802 * 16 14 12 19 19 H 1.48499 * 109.46643 * 60.00269 * 18 16 14 20 20 H 1.48495 * 109.46852 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.46898 * 300.00282 * 18 16 14 22 22 C 1.50698 * 109.46899 * 179.97438 * 12 10 9 23 23 C 1.38236 * 120.00071 * 226.73683 * 22 12 10 24 24 C 1.38232 * 119.99997 * 180.34350 * 23 22 12 25 25 C 1.38239 * 120.00113 * 359.91067 * 24 23 22 26 26 C 1.38234 * 119.99902 * 0.04293 * 25 24 23 27 27 C 1.38237 * 120.00165 * 0.02562 * 26 25 24 28 28 C 1.33351 * 117.94606 * 270.00549 * 3 2 1 29 29 O 1.21282 * 118.24637 * 357.77642 * 28 3 2 30 30 H 1.09004 * 109.46749 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46943 * 299.99644 * 1 2 3 32 32 H 1.08998 * 109.47336 * 59.99864 * 1 2 3 33 33 H 1.09005 * 109.46960 * 239.99803 * 2 1 3 34 34 H 1.08998 * 109.47336 * 120.00136 * 2 1 3 35 35 H 1.08998 * 109.29855 * 78.77050 * 4 3 2 36 36 H 1.09002 * 109.30445 * 319.39343 * 4 3 2 37 37 H 1.08994 * 109.60258 * 189.49207 * 5 4 3 38 38 H 1.09007 * 109.59935 * 69.00815 * 5 4 3 39 39 H 1.09000 * 109.67827 * 307.78969 * 6 5 4 40 40 H 1.09005 * 109.67442 * 187.26080 * 6 5 4 41 41 H 0.96999 * 120.00139 * 24.99482 * 9 7 6 42 42 H 0.96997 * 120.00490 * 180.02562 * 17 16 14 43 43 H 1.07996 * 120.00005 * 0.27953 * 23 22 12 44 44 H 1.08001 * 120.00245 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.00145 * 180.02562 * 25 24 23 46 46 H 1.08003 * 120.00051 * 180.02562 * 26 25 24 47 47 H 1.08001 * 120.00063 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2460 2.0252 1.2876 5 6 2.2870 3.5453 1.1260 6 6 3.2667 3.8929 -0.0013 7 6 2.6788 3.3951 -1.3240 8 1 1.8272 4.0175 -1.5988 9 7 3.6996 3.4767 -2.3716 10 6 3.3319 3.5872 -3.6636 11 8 2.1560 3.6186 -3.9588 12 6 4.3820 3.6718 -4.7412 13 1 5.0087 4.5470 -4.5700 14 6 5.2347 2.4296 -4.7103 15 1 6.3068 2.5129 -4.6103 16 6 4.6461 1.1867 -4.8095 17 7 3.3452 1.0865 -4.9744 18 14 5.6965 -0.3548 -4.7098 19 1 6.3965 -0.3929 -3.4007 20 1 4.8302 -1.5535 -4.8434 21 1 6.6976 -0.3434 -5.8064 22 6 3.7130 3.7878 -6.0865 23 6 4.1367 2.9988 -7.1395 24 6 3.5277 3.1103 -8.3754 25 6 2.4937 4.0096 -8.5579 26 6 2.0694 4.7979 -7.5047 27 6 2.6793 4.6874 -6.2690 28 6 2.2266 1.9704 -1.1780 29 8 2.0409 1.3211 -2.1854 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.1946 1.6811 1.6998 36 1 1.4410 1.7571 1.9719 37 1 2.6227 4.0030 2.0564 38 1 1.2926 3.9130 0.8727 39 1 4.2243 3.4054 0.1813 40 1 3.4069 4.9730 -0.0456 41 1 4.6400 3.4513 -2.1354 42 1 2.9310 0.2121 -5.0438 43 1 4.9442 2.2960 -6.9968 44 1 3.8590 2.4942 -9.1983 45 1 2.0176 4.0964 -9.5234 46 1 1.2613 5.5001 -7.6471 47 1 2.3480 5.3036 -5.4463 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361534628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:13 Heat of formation + Delta-G solvation = -59.564818 kcal Electronic energy + Delta-G solvation = -29972.712752 eV Core-core repulsion = 26119.558056 eV Total energy + Delta-G solvation = -3853.154696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63449 -40.41440 -38.96309 -37.33450 -36.26365 -35.38247 -33.73539 -32.55957 -31.32890 -30.95448 -29.93859 -28.60797 -25.88888 -25.31273 -24.22351 -22.93212 -22.67344 -22.16303 -20.87420 -19.67444 -18.52174 -17.88501 -17.48607 -17.31340 -17.09949 -16.81732 -16.59992 -15.81323 -15.43747 -15.34576 -15.28317 -14.80615 -14.74035 -14.64687 -14.22117 -14.16645 -13.89796 -13.70169 -13.65867 -13.36209 -13.04632 -12.93953 -12.75884 -12.72785 -12.61334 -12.38545 -12.21196 -12.10742 -11.94207 -11.76401 -11.73839 -11.38755 -11.12688 -10.76684 -10.53800 -10.06739 -9.56075 -9.50248 -9.35127 -9.06176 -7.95727 -6.15005 0.89956 0.95453 1.37540 1.39216 1.45977 1.79340 2.07417 2.41674 2.61322 2.87342 3.30951 3.38821 3.74610 3.79787 3.89131 4.06799 4.16504 4.25781 4.34508 4.36124 4.40958 4.46185 4.51954 4.60464 4.65617 4.69485 4.79828 4.84794 4.91972 5.01509 5.03056 5.06918 5.09457 5.14708 5.20986 5.21836 5.34343 5.48629 5.57006 5.68785 5.74492 5.89627 5.92971 5.98583 6.04028 6.46858 6.55852 6.64246 6.82055 7.12475 7.48990 7.52154 8.04821 8.99207 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013034 B = 0.004783 C = 0.004215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.695757 B = 5852.279925 C = 6640.764791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.103 3.897 3 N -0.610 5.610 4 C 0.106 3.894 5 C -0.123 4.123 6 C -0.118 4.118 7 C 0.144 3.856 8 H 0.082 0.918 9 N -0.715 5.715 10 C 0.556 3.444 11 O -0.573 6.573 12 C 0.051 3.949 13 H 0.068 0.932 14 C -0.547 4.547 15 H 0.068 0.932 16 C 0.046 3.954 17 N -0.834 5.834 18 Si 0.929 3.071 19 H -0.273 1.273 20 H -0.307 1.307 21 H -0.266 1.266 22 C -0.032 4.032 23 C -0.087 4.087 24 C -0.154 4.154 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.118 4.118 28 C 0.474 3.526 29 O -0.548 6.548 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.018 0.982 33 H 0.040 0.960 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.405 0.595 42 H 0.246 0.754 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.137 0.863 46 H 0.129 0.871 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.425 4.959 14.825 15.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 N -0.346 5.346 4 C -0.015 4.015 5 C -0.161 4.161 6 C -0.156 4.156 7 C 0.035 3.965 8 H 0.100 0.900 9 N -0.367 5.367 10 C 0.346 3.654 11 O -0.451 6.451 12 C 0.029 3.971 13 H 0.086 0.914 14 C -0.585 4.585 15 H 0.086 0.914 16 C -0.162 4.162 17 N -0.465 5.465 18 Si 0.757 3.243 19 H -0.198 1.198 20 H -0.234 1.234 21 H -0.191 1.191 22 C -0.033 4.033 23 C -0.105 4.105 24 C -0.172 4.172 25 C -0.161 4.161 26 C -0.165 4.165 27 C -0.136 4.136 28 C 0.259 3.741 29 O -0.423 6.423 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.240 0.760 42 H 0.055 0.945 43 H 0.128 0.872 44 H 0.143 0.857 45 H 0.155 0.845 46 H 0.147 0.853 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.530 4.539 14.030 14.825 hybrid contribution 0.528 -1.601 -0.219 1.700 sum -1.003 2.937 13.811 14.155 Atomic orbital electron populations 1.21985 0.95367 1.02555 1.01199 1.21413 0.94930 0.83262 1.02405 1.47629 1.66187 1.14422 1.06389 1.21713 1.03046 0.93541 0.83209 1.21865 0.99844 0.94339 1.00061 1.21952 0.99898 1.03273 0.90481 1.20689 0.93658 0.91481 0.90703 0.89981 1.45561 1.08959 1.76830 1.05390 1.20965 0.89577 0.71538 0.83328 1.90499 1.21377 1.50973 1.82260 1.17956 0.92738 0.98018 0.88357 0.91404 1.20673 0.93002 0.89302 1.55485 0.91412 1.25481 0.95168 1.00856 0.94684 1.70183 1.09508 1.23205 1.43619 0.86064 0.78962 0.80411 0.78873 1.19781 1.23379 1.19067 1.19968 0.94765 0.93067 0.95529 1.21118 0.99874 0.97187 0.92337 1.21304 0.98321 1.00140 0.97388 1.21157 0.98122 0.97486 0.99304 1.21186 1.00782 1.01267 0.93282 1.21043 0.96599 0.99511 0.96477 1.21411 0.78112 0.91202 0.83343 1.90908 1.49998 1.64257 1.37107 0.90526 0.90350 0.96241 0.94177 0.87482 0.90378 0.88455 0.85502 0.91337 0.89923 0.88299 0.76010 0.94494 0.87195 0.85739 0.84491 0.85307 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 10.23 71.98 0.74 -3.16 16 2 C 0.10 2.89 5.94 86.38 0.51 3.40 16 3 N -0.61 -17.66 2.81 -826.63 -2.32 -19.99 16 4 C 0.11 1.76 6.32 86.49 0.55 2.31 16 5 C -0.12 -1.76 6.02 30.68 0.18 -1.57 16 6 C -0.12 -2.41 5.50 30.73 0.17 -2.25 16 7 C 0.14 5.02 2.70 44.10 0.12 5.14 16 8 H 0.08 3.20 7.58 -2.39 -0.02 3.18 16 9 N -0.71 -29.23 4.87 -446.77 -2.17 -31.41 16 10 C 0.56 27.83 4.89 87.66 0.43 28.26 16 11 O -0.57 -32.97 13.13 -1.23 -0.02 -32.99 16 12 C 0.05 2.51 2.78 -13.03 -0.04 2.47 16 13 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 14 C -0.55 -28.24 7.11 25.60 0.18 -28.06 16 15 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 16 C 0.05 2.51 4.01 84.65 0.34 2.85 16 17 N -0.83 -50.35 10.90 21.45 0.23 -50.11 16 18 Si 0.93 44.55 29.54 68.60 2.03 46.57 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.31 -15.50 7.11 99.48 0.71 -14.80 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 C -0.03 -1.64 4.51 -19.86 -0.09 -1.73 16 23 C -0.09 -4.32 8.20 22.27 0.18 -4.14 16 24 C -0.15 -6.62 10.05 22.27 0.22 -6.40 16 25 C -0.14 -5.66 10.05 22.27 0.22 -5.43 16 26 C -0.15 -6.16 10.05 22.27 0.22 -5.94 16 27 C -0.12 -5.65 8.22 22.27 0.18 -5.47 16 28 C 0.47 18.89 7.19 87.71 0.63 19.52 16 29 O -0.55 -29.24 14.92 -1.24 -0.02 -29.26 16 30 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.04 1.50 7.13 -2.38 -0.02 1.48 16 34 H 0.11 2.12 8.01 -2.39 -0.02 2.10 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 1.12 8.10 -2.39 -0.02 1.10 16 37 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.07 1.09 8.12 -2.38 -0.02 1.07 16 39 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 40 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.40 14.81 8.47 -92.71 -0.79 14.02 16 42 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.11 5.73 6.04 -2.91 -0.02 5.71 16 44 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 45 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 46 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 47 H 0.10 4.78 6.98 -2.91 -0.02 4.76 16 Total: -1.00 -81.38 377.07 2.67 -78.71 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: 0.19 Total: 38.66 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 4.76 Total: -0.20 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -4.26 Total: -101.51 kcal Atomic # 8 Polarization: -62.21 SS G_CDS: -0.03 Total: -62.24 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -81.38 2.67 -78.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361534628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.145 kcal (2) G-P(sol) polarization free energy of solvation -81.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds