Wall clock time and date at job start Tue Mar 31 2020 16:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47113 * 2 1 4 4 C 1.46693 * 119.81768 * 269.97731 * 3 2 1 5 5 C 1.53033 * 109.07387 * 251.28947 * 4 3 2 6 6 C 1.52896 * 110.11074 * 271.19284 * 5 4 3 7 7 N 1.46060 * 111.23846 * 62.87852 * 6 5 4 8 8 C 1.34776 * 119.80982 * 117.02840 * 7 6 5 9 9 O 1.21278 * 119.99743 * 359.72740 * 8 7 6 10 10 C 1.50697 * 119.99957 * 179.72870 * 8 7 6 11 11 H 1.08993 * 109.47036 * 324.01850 * 10 8 7 12 12 C 1.50701 * 109.47223 * 84.02223 * 10 8 7 13 13 H 1.08004 * 119.99809 * 28.31906 * 12 10 8 14 14 C 1.37876 * 120.00186 * 208.31786 * 12 10 8 15 15 N 1.31503 * 120.00341 * 186.75846 * 14 12 10 16 16 Si 1.86805 * 119.99532 * 6.76270 * 14 12 10 17 17 H 1.48496 * 109.47119 * 84.85614 * 16 14 12 18 18 H 1.48496 * 109.47227 * 324.85031 * 16 14 12 19 19 H 1.48503 * 109.46774 * 204.85363 * 16 14 12 20 20 C 1.50707 * 109.47077 * 204.02021 * 10 8 7 21 21 C 1.38232 * 119.99886 * 292.25632 * 20 10 8 22 22 C 1.38234 * 119.99678 * 179.78691 * 21 20 10 23 23 C 1.38235 * 120.00417 * 0.43838 * 22 21 20 24 24 C 1.38236 * 119.99687 * 359.81391 * 23 22 21 25 25 C 1.38232 * 119.99850 * 112.52459 * 20 10 8 26 26 C 1.46663 * 120.37983 * 296.75908 * 7 6 5 27 27 C 1.34259 * 119.81237 * 90.00015 * 3 2 1 28 28 O 1.21279 * 120.34897 * 2.88798 * 27 3 2 29 29 H 1.09010 * 109.47192 * 59.99785 * 1 2 3 30 30 H 1.08996 * 109.47651 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47553 * 300.00052 * 1 2 3 32 32 H 1.08996 * 109.46872 * 240.00209 * 2 1 3 33 33 H 1.09002 * 109.46998 * 120.00521 * 2 1 3 34 34 H 1.09007 * 109.53625 * 11.16770 * 4 3 2 35 35 H 1.09000 * 109.54134 * 131.41089 * 4 3 2 36 36 H 1.09004 * 109.35607 * 31.54167 * 5 4 3 37 37 H 1.09004 * 109.35573 * 151.25530 * 5 4 3 38 38 H 1.09007 * 109.24204 * 302.41407 * 6 5 4 39 39 H 1.09006 * 109.17921 * 183.30323 * 6 5 4 40 40 H 0.97005 * 120.00407 * 180.02562 * 15 14 12 41 41 H 1.08001 * 120.00382 * 359.97438 * 21 20 10 42 42 H 1.08002 * 119.99980 * 180.27312 * 22 21 20 43 43 H 1.07992 * 120.00681 * 179.83693 * 23 22 21 44 44 H 1.07994 * 120.00056 * 179.97438 * 24 23 22 45 45 H 1.07999 * 120.00277 * 359.97438 * 25 20 10 46 46 H 1.09003 * 109.59578 * 202.01395 * 26 7 6 47 47 H 1.08997 * 109.60025 * 322.48601 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2619 2.0687 -1.2727 5 6 3.7706 2.2260 -1.4754 6 6 4.2526 3.5320 -0.8431 7 7 4.0403 3.5302 0.6020 8 6 5.0977 3.6008 1.4347 9 8 6.2218 3.6606 0.9835 10 6 4.8832 3.6053 2.9263 11 1 3.9749 4.1603 3.1610 12 6 4.7471 2.1875 3.4186 13 1 5.2350 1.3828 2.8888 14 6 3.9996 1.9177 4.5453 15 7 3.9882 0.7042 5.0519 16 14 3.0030 3.2761 5.3522 17 1 1.6859 3.3921 4.6761 18 1 3.7346 4.5630 5.2354 19 1 2.7962 2.9528 6.7868 20 6 6.0607 4.2605 3.6011 21 6 7.2985 3.6455 3.5819 22 6 8.3796 4.2486 4.1971 23 6 8.2208 5.4623 4.8394 24 6 6.9818 6.0748 4.8631 25 6 5.9017 5.4738 4.2441 26 6 2.6826 3.4578 1.1521 27 6 2.2408 2.0105 1.1649 28 8 2.0897 1.4251 2.2163 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8436 1.4814 -2.0902 35 1 1.7925 3.0522 -1.2515 36 1 4.2869 1.3853 -1.0120 37 1 3.9920 2.2422 -2.5426 38 1 3.7064 4.3668 -1.2823 39 1 5.3161 3.6573 -1.0467 40 1 3.4621 0.5143 5.8444 41 1 7.4217 2.6952 3.0836 42 1 9.3477 3.7702 4.1783 43 1 9.0648 5.9322 5.3223 44 1 6.8577 7.0229 5.3652 45 1 4.9337 5.9525 4.2625 46 1 2.6789 3.8502 2.1691 47 1 2.0044 4.0417 0.5299 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412048532.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:14 Heat of formation + Delta-G solvation = -49.033532 kcal Electronic energy + Delta-G solvation = -30273.173518 eV Core-core repulsion = 26420.475493 eV Total energy + Delta-G solvation = -3852.698025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.78618 -40.51162 -39.43948 -37.50348 -36.43097 -35.44555 -33.55999 -32.95093 -31.73988 -31.61593 -29.53029 -28.40976 -27.00385 -25.28460 -24.08721 -23.47447 -23.28114 -21.94559 -20.47211 -19.74123 -19.01719 -18.48819 -18.04521 -17.50722 -17.18823 -16.87871 -16.43153 -15.99531 -15.75169 -15.49932 -15.26111 -14.89334 -14.77008 -14.60524 -14.42597 -14.28915 -14.13500 -14.02610 -13.78348 -13.47489 -13.35009 -13.16137 -13.04030 -12.84773 -12.69289 -12.57501 -12.25965 -12.12746 -12.01798 -11.89033 -11.85785 -11.62117 -11.44406 -10.91204 -10.62701 -10.57349 -9.67325 -9.61522 -9.49567 -9.36138 -8.24321 -6.28254 0.63994 0.71442 1.33935 1.36181 1.43320 1.47377 1.79518 2.16574 2.39125 2.40839 3.07001 3.22985 3.59645 3.78804 3.90708 3.96250 4.09758 4.11342 4.19591 4.23256 4.30961 4.37363 4.39654 4.42426 4.44512 4.51135 4.59214 4.62023 4.76741 4.80673 4.84188 4.91512 4.92817 4.96854 5.07975 5.22439 5.27116 5.31299 5.33628 5.45648 5.59716 5.70448 5.75549 5.77680 5.99641 6.15247 6.27707 6.36983 6.52606 6.67438 7.26852 7.36900 7.41751 8.93057 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013828 B = 0.005425 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.373070 B = 5160.471922 C = 6371.339314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.107 3.893 3 N -0.615 5.615 4 C 0.110 3.890 5 C -0.151 4.151 6 C 0.099 3.901 7 N -0.602 5.602 8 C 0.534 3.466 9 O -0.575 6.575 10 C 0.038 3.962 11 H 0.066 0.934 12 C -0.480 4.480 13 H 0.010 0.990 14 C 0.062 3.938 15 N -0.933 5.933 16 Si 0.906 3.094 17 H -0.260 1.260 18 H -0.220 1.220 19 H -0.297 1.297 20 C -0.067 4.067 21 C -0.096 4.096 22 C -0.138 4.138 23 C -0.133 4.133 24 C -0.126 4.126 25 C -0.145 4.145 26 C 0.100 3.900 27 C 0.486 3.514 28 O -0.543 6.543 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.035 0.965 34 H 0.119 0.881 35 H 0.101 0.899 36 H 0.032 0.968 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.261 0.739 41 H 0.081 0.919 42 H 0.131 0.869 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.126 0.874 46 H 0.092 0.908 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 9.786 -14.280 18.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.350 5.350 4 C -0.011 4.011 5 C -0.190 4.190 6 C -0.022 4.022 7 N -0.336 5.336 8 C 0.324 3.676 9 O -0.455 6.455 10 C 0.017 3.983 11 H 0.084 0.916 12 C -0.518 4.518 13 H 0.028 0.972 14 C -0.138 4.138 15 N -0.571 5.571 16 Si 0.730 3.270 17 H -0.185 1.185 18 H -0.143 1.143 19 H -0.224 1.224 20 C -0.068 4.068 21 C -0.114 4.114 22 C -0.156 4.156 23 C -0.151 4.151 24 C -0.144 4.144 25 C -0.163 4.163 26 C -0.026 4.026 27 C 0.271 3.729 28 O -0.417 6.417 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.137 0.863 35 H 0.119 0.881 36 H 0.051 0.949 37 H 0.141 0.859 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.148 0.852 43 H 0.169 0.831 44 H 0.169 0.831 45 H 0.144 0.856 46 H 0.110 0.890 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.642 9.382 -13.848 17.653 hybrid contribution -0.269 -0.857 0.927 1.291 sum -5.911 8.525 -12.921 16.570 Atomic orbital electron populations 1.22007 0.94294 1.02728 1.01910 1.21426 0.95454 0.82590 1.02076 1.48132 1.65976 1.14346 1.06578 1.22009 0.94853 0.99618 0.84661 1.22408 0.96890 0.96681 1.03018 1.21735 1.03218 0.99242 0.77993 1.47647 1.05182 1.73517 1.07288 1.21111 0.83969 0.72633 0.89854 1.90542 1.24284 1.51829 1.78829 1.18284 0.94245 0.96932 0.88838 0.91604 1.19886 1.31984 0.88715 1.11178 0.97197 1.25397 0.95549 0.96883 0.96014 1.69990 1.41490 1.22839 1.22743 0.86399 0.80868 0.82437 0.77305 1.18511 1.14268 1.22366 1.20204 0.95046 0.93813 0.97711 1.20799 0.93582 0.98529 0.98499 1.21339 0.98415 0.96934 0.98938 1.21347 0.98335 0.95270 1.00145 1.21368 0.92475 1.00800 0.99754 1.21298 0.99909 0.95014 1.00065 1.22006 0.84411 0.93457 1.02750 1.21495 0.77156 0.90481 0.83729 1.90858 1.50402 1.68057 1.32427 0.89994 0.90704 0.95054 0.88255 0.94661 0.86264 0.88120 0.94904 0.85881 0.87020 0.90871 0.93043 0.90046 0.85156 0.83146 0.83142 0.85638 0.89001 0.83830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 10.24 71.98 0.74 -2.58 16 2 C 0.11 2.94 6.08 86.38 0.52 3.46 16 3 N -0.62 -17.44 2.48 -821.18 -2.03 -19.47 16 4 C 0.11 1.84 5.83 86.35 0.50 2.34 16 5 C -0.15 -3.08 5.94 30.57 0.18 -2.90 16 6 C 0.10 2.47 5.94 86.43 0.51 2.98 16 7 N -0.60 -20.94 2.67 -825.87 -2.21 -23.15 16 8 C 0.53 24.10 6.76 87.66 0.59 24.69 16 9 O -0.58 -28.52 14.51 -3.02 -0.04 -28.56 16 10 C 0.04 1.86 1.12 -13.03 -0.01 1.85 16 11 H 0.07 2.99 3.33 -2.39 -0.01 2.98 16 12 C -0.48 -28.17 7.03 25.60 0.18 -27.99 16 13 H 0.01 0.68 8.06 -2.91 -0.02 0.65 16 14 C 0.06 3.70 4.77 84.66 0.40 4.10 16 15 N -0.93 -61.10 13.96 21.45 0.30 -60.80 16 16 Si 0.91 44.47 26.68 68.60 1.83 46.30 16 17 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.22 -9.45 4.81 99.48 0.48 -8.97 16 19 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 20 C -0.07 -3.12 4.31 -19.87 -0.09 -3.20 16 21 C -0.10 -4.56 8.05 22.27 0.18 -4.38 16 22 C -0.14 -5.35 10.05 22.27 0.22 -5.12 16 23 C -0.13 -4.33 10.05 22.27 0.22 -4.10 16 24 C -0.13 -4.14 10.05 22.27 0.22 -3.92 16 25 C -0.14 -5.69 8.57 22.27 0.19 -5.49 16 26 C 0.10 3.22 5.31 85.80 0.46 3.68 16 27 C 0.49 18.52 7.17 87.94 0.63 19.15 16 28 O -0.54 -27.59 15.03 -3.03 -0.05 -27.64 16 29 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 2.06 8.02 -2.39 -0.02 2.04 16 33 H 0.03 1.32 7.38 -2.39 -0.02 1.31 16 34 H 0.12 1.18 7.91 -2.38 -0.02 1.16 16 35 H 0.10 1.17 6.71 -2.39 -0.02 1.15 16 36 H 0.03 0.97 8.04 -2.38 -0.02 0.95 16 37 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.11 1.76 8.08 -2.38 -0.02 1.74 16 39 H 0.07 2.17 6.85 -2.38 -0.02 2.16 16 40 H 0.26 16.28 8.31 -92.70 -0.77 15.51 16 41 H 0.08 4.39 7.70 -2.91 -0.02 4.36 16 42 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 43 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 44 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 45 H 0.13 4.41 7.19 -2.91 -0.02 4.39 16 46 H 0.09 3.40 5.38 -2.39 -0.01 3.38 16 47 H 0.14 2.88 7.17 -2.39 -0.02 2.86 16 Total: -1.00 -88.43 368.45 4.21 -84.22 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.74 Total: 26.54 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.66 Total: 2.56 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -3.94 Total: -103.42 kcal Atomic # 8 Polarization: -56.11 SS G_CDS: -0.09 Total: -56.20 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.83 Total: 46.30 kcal Total: -88.43 4.21 -84.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412048532.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.185 kcal (2) G-P(sol) polarization free energy of solvation -88.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds