Wall clock time and date at job start Tue Mar 31 2020 16:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47026 * 2 1 4 4 C 1.46763 * 124.34724 * 269.95025 * 3 2 1 5 5 C 1.54486 * 105.47320 * 197.03451 * 4 3 2 6 6 H 1.08992 * 111.00467 * 216.44941 * 5 4 3 7 7 C 1.53001 * 110.96774 * 92.69990 * 5 4 3 8 8 N 1.46497 * 109.47513 * 181.16832 * 7 5 4 9 9 C 1.34770 * 120.00246 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00039 * 0.02562 * 9 8 7 11 11 C 1.50708 * 119.99755 * 179.97438 * 9 8 7 12 12 H 1.08994 * 109.47002 * 60.00210 * 11 9 8 13 13 C 1.50698 * 109.47395 * 299.99980 * 11 9 8 14 14 H 1.07988 * 120.00132 * 125.77067 * 13 11 9 15 15 C 1.37880 * 119.99660 * 305.76928 * 13 11 9 16 16 N 1.31513 * 120.00103 * 5.09482 * 15 13 11 17 17 Si 1.86798 * 119.99693 * 185.09037 * 15 13 11 18 18 H 1.48501 * 109.47356 * 90.00252 * 17 15 13 19 19 H 1.48502 * 109.47272 * 210.00294 * 17 15 13 20 20 H 1.48501 * 109.47301 * 329.99994 * 17 15 13 21 21 C 1.50700 * 109.46749 * 179.97438 * 11 9 8 22 22 C 1.38247 * 119.99682 * 115.07836 * 21 11 9 23 23 C 1.38230 * 119.99667 * 179.97438 * 22 21 11 24 24 C 1.38231 * 120.00407 * 359.97438 * 23 22 21 25 25 C 1.38229 * 119.99987 * 359.97438 * 24 23 22 26 26 C 1.38231 * 120.00387 * 294.99043 * 21 11 9 27 27 C 1.54632 * 101.76386 * 334.58667 * 5 4 3 28 28 C 1.34420 * 124.35180 * 89.97486 * 3 2 1 29 29 O 1.21284 * 124.94294 * 359.52852 * 28 3 2 30 30 H 1.08998 * 109.47464 * 299.99826 * 1 2 3 31 31 H 1.09000 * 109.47266 * 60.00586 * 1 2 3 32 32 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47314 * 239.99652 * 2 1 3 34 34 H 1.09006 * 109.47050 * 119.99814 * 2 1 3 35 35 H 1.08997 * 110.24792 * 78.03690 * 4 3 2 36 36 H 1.08997 * 110.24795 * 316.03563 * 4 3 2 37 37 H 1.09007 * 109.47125 * 61.17172 * 7 5 4 38 38 H 1.09001 * 109.47405 * 301.17143 * 7 5 4 39 39 H 0.97003 * 119.99480 * 0.02562 * 8 7 5 40 40 H 0.97003 * 119.99925 * 179.97438 * 16 15 13 41 41 H 1.07996 * 119.99724 * 0.25495 * 22 21 11 42 42 H 1.08004 * 119.99501 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.00165 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00099 * 179.97438 * 25 24 23 45 45 H 1.07998 * 119.99920 * 0.07997 * 26 21 11 46 46 H 1.09004 * 110.48685 * 143.47631 * 27 5 4 47 47 H 1.08997 * 110.48488 * 266.11390 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2953 2.1615 -1.2117 5 6 3.1754 3.3437 -0.7485 6 1 2.9329 4.2513 -1.3010 7 6 4.6615 3.0052 -0.8822 8 7 5.4644 4.1354 -0.4090 9 6 6.8099 4.0633 -0.4333 10 8 7.3562 3.0628 -0.8474 11 6 7.6358 5.2263 0.0530 12 1 7.4017 5.4261 1.0986 13 6 7.3217 6.4462 -0.7741 14 1 7.0160 7.3623 -0.2907 15 6 7.4245 6.3928 -2.1480 16 7 7.6988 5.2525 -2.7430 17 14 7.1742 7.9400 -3.1642 18 1 8.4762 8.6316 -3.3421 19 1 6.6218 7.5752 -4.4935 20 1 6.2253 8.8434 -2.4650 21 6 9.0995 4.8928 -0.0786 22 6 9.8962 5.6105 -0.9513 23 6 11.2389 5.3049 -1.0716 24 6 11.7852 4.2822 -0.3191 25 6 10.9889 3.5653 0.5542 26 6 9.6460 3.8705 0.6745 27 6 2.7695 3.4754 0.7378 28 6 2.2707 2.0965 1.1098 29 8 2.1196 1.6951 2.2442 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.3651 2.5305 -1.6436 36 1 2.8336 1.5524 -1.9378 37 1 4.8960 2.8055 -1.9279 38 1 4.8884 2.1226 -0.2841 39 1 5.0275 4.9358 -0.0781 40 1 7.7709 5.2148 -3.7096 41 1 9.4704 6.4128 -1.5355 42 1 11.8611 5.8653 -1.7537 43 1 12.8342 4.0432 -0.4135 44 1 11.4156 2.7659 1.1419 45 1 9.0237 3.3100 1.3563 46 1 3.6324 3.7459 1.3464 47 1 1.9747 4.2124 0.8523 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413232395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:31 Heat of formation + Delta-G solvation = -45.856081 kcal Electronic energy + Delta-G solvation = -28610.065691 eV Core-core repulsion = 24757.505450 eV Total energy + Delta-G solvation = -3852.560240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60106 -38.88357 -37.54405 -36.58508 -34.88439 -33.70273 -32.68530 -30.89760 -29.75872 -29.65072 -28.12463 -27.36697 -25.38232 -23.80418 -23.35449 -21.26872 -20.91822 -20.45736 -19.55180 -18.95703 -16.97577 -16.94719 -16.39853 -15.69249 -15.58271 -15.21513 -14.90869 -14.74595 -14.40336 -14.15289 -13.88814 -13.71841 -13.63853 -13.32395 -13.00552 -12.94533 -12.54706 -12.42492 -12.28416 -12.17491 -12.13605 -11.92187 -11.56653 -11.34801 -11.25502 -11.18437 -10.96971 -10.86905 -10.77023 -10.38652 -10.07944 -9.76245 -9.72728 -9.38871 -8.84385 -8.66676 -8.29953 -7.96800 -7.77034 -7.41430 -6.20031 -4.34373 2.49183 2.58677 2.59389 2.91551 3.15735 3.25494 3.26166 4.04382 4.17586 4.30037 4.35760 4.59786 4.75302 4.81058 4.94495 4.99061 5.04574 5.05731 5.16609 5.36524 5.42481 5.48911 5.52929 5.63751 5.72725 5.82731 5.84409 5.92552 5.92942 6.02606 6.20228 6.22497 6.35376 6.46406 6.59312 6.62306 6.81416 6.88742 7.03935 7.08348 7.21500 7.49625 7.54264 7.60914 7.68125 7.79157 8.13507 8.15528 8.25422 8.60217 8.81223 9.30634 9.75399 10.80675 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.003411 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.426672 B = 8205.712034 C = 9442.644570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.620 5.620 4 C 0.111 3.889 5 C -0.111 4.111 6 H 0.105 0.895 7 C 0.138 3.862 8 N -0.736 5.736 9 C 0.557 3.443 10 O -0.548 6.548 11 C 0.055 3.945 12 H 0.055 0.945 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.072 3.928 16 N -0.845 5.845 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.272 1.272 21 C -0.018 4.018 22 C -0.060 4.060 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.114 4.114 27 C -0.153 4.153 28 C 0.520 3.480 29 O -0.537 6.537 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.395 0.605 40 H 0.266 0.734 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.101 0.899 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 -4.055 1.512 10.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.001 4.001 3 N -0.355 5.355 4 C -0.013 4.013 5 C -0.130 4.130 6 H 0.124 0.876 7 C 0.014 3.986 8 N -0.390 5.390 9 C 0.346 3.654 10 O -0.424 6.424 11 C 0.034 3.966 12 H 0.073 0.927 13 C -0.575 4.575 14 H 0.086 0.914 15 C -0.135 4.135 16 N -0.478 5.478 17 Si 0.713 3.287 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.019 4.019 22 C -0.077 4.077 23 C -0.167 4.167 24 C -0.162 4.162 25 C -0.161 4.161 26 C -0.132 4.132 27 C -0.193 4.193 28 C 0.309 3.691 29 O -0.414 6.414 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.229 0.771 40 H 0.076 0.924 41 H 0.154 0.846 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.127 0.873 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.739 -5.202 1.598 11.156 hybrid contribution -0.362 1.045 -0.934 1.447 sum -10.101 -4.158 0.664 10.943 Atomic orbital electron populations 1.22154 0.95925 1.02205 1.02359 1.21327 0.94186 0.81369 1.03213 1.48333 1.66009 1.13713 1.07455 1.22091 0.99091 0.92751 0.87355 1.22447 0.95764 0.99138 0.95690 0.87641 1.20982 0.87065 0.90459 1.00137 1.45726 1.06804 1.17945 1.68510 1.20849 0.80961 0.87798 0.75753 1.90534 1.71538 1.33849 1.46517 1.17912 0.88645 0.93360 0.96710 0.92663 1.20765 1.49598 0.96266 0.90911 0.91415 1.25047 0.94407 0.95991 0.98066 1.70078 1.44056 1.23522 1.10112 0.86687 0.78810 0.83500 0.79737 1.20295 1.21208 1.19625 1.19852 0.95803 0.92915 0.93294 1.21422 0.91458 0.99358 0.95507 1.21064 0.96160 0.98936 1.00518 1.20793 0.98493 0.97997 0.98896 1.20786 0.94478 1.00323 1.00523 1.20888 0.94401 0.97541 1.00395 1.22463 1.03748 0.95526 0.97560 1.20966 0.76185 0.87767 0.84226 1.90704 1.53897 1.75563 1.21229 0.92318 0.92453 0.91544 0.90317 0.90109 0.90796 0.89879 0.91741 0.92902 0.77135 0.92377 0.84616 0.87995 0.88100 0.87983 0.88050 0.87315 0.87709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.24 37.16 0.38 -0.99 16 2 C 0.12 1.16 6.65 -4.04 -0.03 1.13 16 3 N -0.62 -7.00 2.93 -172.41 -0.51 -7.50 16 4 C 0.11 1.04 6.90 -3.12 -0.02 1.02 16 5 C -0.11 -1.23 3.22 -88.98 -0.29 -1.51 16 6 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 7 C 0.14 2.17 5.02 -4.04 -0.02 2.15 16 8 N -0.74 -13.56 5.01 -60.29 -0.30 -13.87 16 9 C 0.56 12.82 5.37 -10.98 -0.06 12.76 16 10 O -0.55 -14.56 15.15 5.56 0.08 -14.47 16 11 C 0.06 1.27 2.67 -94.07 -0.25 1.01 16 12 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.54 -12.64 7.61 -34.44 -0.26 -12.90 16 14 H 0.07 1.55 7.82 -52.49 -0.41 1.14 16 15 C 0.07 1.73 3.19 -17.82 -0.06 1.67 16 16 N -0.84 -21.94 10.42 55.43 0.58 -21.36 16 17 Si 0.89 18.90 29.54 -169.99 -5.02 13.87 16 18 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 C -0.02 -0.42 4.50 -104.62 -0.47 -0.89 16 22 C -0.06 -1.41 8.00 -39.58 -0.32 -1.73 16 23 C -0.15 -3.14 10.05 -39.59 -0.40 -3.54 16 24 C -0.14 -2.83 10.05 -39.59 -0.40 -3.23 16 25 C -0.14 -2.88 10.05 -39.58 -0.40 -3.28 16 26 C -0.11 -2.52 8.74 -39.58 -0.35 -2.87 16 27 C -0.15 -1.75 6.24 -26.74 -0.17 -1.91 16 28 C 0.52 7.22 8.02 -10.86 -0.09 7.14 16 29 O -0.54 -9.48 17.60 5.55 0.10 -9.39 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.87 7.93 -51.93 -0.41 0.46 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.75 7.91 -51.93 -0.41 0.34 16 37 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.40 6.50 8.08 -40.82 -0.33 6.17 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.14 3.37 4.98 -52.49 -0.26 3.10 16 42 H 0.10 1.90 8.06 -52.48 -0.42 1.48 16 43 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 44 H 0.10 1.76 8.06 -52.48 -0.42 1.33 16 45 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 46 H 0.11 1.36 7.40 -51.93 -0.38 0.98 16 47 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 384.55 15.07 5.80 5.80 Total: -1.00 -31.79 384.55 -9.72 -41.51 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -7.26 Total: 11.38 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -3.18 Total: -5.97 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.23 Total: -42.73 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.18 Total: -23.86 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.79 -9.72 -41.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413232395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.344 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds