Wall clock time and date at job start Tue Mar 31 2020 16:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47026 * 2 1 4 4 C 1.46763 * 124.34724 * 269.95025 * 3 2 1 5 5 C 1.54486 * 105.47320 * 197.03451 * 4 3 2 6 6 H 1.08992 * 111.00467 * 216.44941 * 5 4 3 7 7 C 1.53001 * 110.96774 * 92.69990 * 5 4 3 8 8 N 1.46497 * 109.47513 * 181.16832 * 7 5 4 9 9 C 1.34770 * 120.00246 * 180.02562 * 8 7 5 10 10 O 1.21279 * 120.00039 * 0.02562 * 9 8 7 11 11 C 1.50708 * 119.99755 * 179.97438 * 9 8 7 12 12 H 1.08994 * 109.47002 * 60.00210 * 11 9 8 13 13 C 1.50698 * 109.47395 * 299.99980 * 11 9 8 14 14 H 1.07988 * 120.00132 * 125.77067 * 13 11 9 15 15 C 1.37880 * 119.99660 * 305.76928 * 13 11 9 16 16 N 1.31513 * 120.00103 * 5.09482 * 15 13 11 17 17 Si 1.86798 * 119.99693 * 185.09037 * 15 13 11 18 18 H 1.48501 * 109.47356 * 90.00252 * 17 15 13 19 19 H 1.48502 * 109.47272 * 210.00294 * 17 15 13 20 20 H 1.48501 * 109.47301 * 329.99994 * 17 15 13 21 21 C 1.50700 * 109.46749 * 179.97438 * 11 9 8 22 22 C 1.38247 * 119.99682 * 115.07836 * 21 11 9 23 23 C 1.38230 * 119.99667 * 179.97438 * 22 21 11 24 24 C 1.38231 * 120.00407 * 359.97438 * 23 22 21 25 25 C 1.38229 * 119.99987 * 359.97438 * 24 23 22 26 26 C 1.38231 * 120.00387 * 294.99043 * 21 11 9 27 27 C 1.54632 * 101.76386 * 334.58667 * 5 4 3 28 28 C 1.34420 * 124.35180 * 89.97486 * 3 2 1 29 29 O 1.21284 * 124.94294 * 359.52852 * 28 3 2 30 30 H 1.08998 * 109.47464 * 299.99826 * 1 2 3 31 31 H 1.09000 * 109.47266 * 60.00586 * 1 2 3 32 32 H 1.09001 * 109.46979 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47314 * 239.99652 * 2 1 3 34 34 H 1.09006 * 109.47050 * 119.99814 * 2 1 3 35 35 H 1.08997 * 110.24792 * 78.03690 * 4 3 2 36 36 H 1.08997 * 110.24795 * 316.03563 * 4 3 2 37 37 H 1.09007 * 109.47125 * 61.17172 * 7 5 4 38 38 H 1.09001 * 109.47405 * 301.17143 * 7 5 4 39 39 H 0.97003 * 119.99480 * 0.02562 * 8 7 5 40 40 H 0.97003 * 119.99925 * 179.97438 * 16 15 13 41 41 H 1.07996 * 119.99724 * 0.25495 * 22 21 11 42 42 H 1.08004 * 119.99501 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.00165 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00099 * 179.97438 * 25 24 23 45 45 H 1.07998 * 119.99920 * 0.07997 * 26 21 11 46 46 H 1.09004 * 110.48685 * 143.47631 * 27 5 4 47 47 H 1.08997 * 110.48488 * 266.11390 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2953 2.1615 -1.2117 5 6 3.1754 3.3437 -0.7485 6 1 2.9329 4.2513 -1.3010 7 6 4.6615 3.0052 -0.8822 8 7 5.4644 4.1354 -0.4090 9 6 6.8099 4.0633 -0.4333 10 8 7.3562 3.0628 -0.8474 11 6 7.6358 5.2263 0.0530 12 1 7.4017 5.4261 1.0986 13 6 7.3217 6.4462 -0.7741 14 1 7.0160 7.3623 -0.2907 15 6 7.4245 6.3928 -2.1480 16 7 7.6988 5.2525 -2.7430 17 14 7.1742 7.9400 -3.1642 18 1 8.4762 8.6316 -3.3421 19 1 6.6218 7.5752 -4.4935 20 1 6.2253 8.8434 -2.4650 21 6 9.0995 4.8928 -0.0786 22 6 9.8962 5.6105 -0.9513 23 6 11.2389 5.3049 -1.0716 24 6 11.7852 4.2822 -0.3191 25 6 10.9889 3.5653 0.5542 26 6 9.6460 3.8705 0.6745 27 6 2.7695 3.4754 0.7378 28 6 2.2707 2.0965 1.1098 29 8 2.1196 1.6951 2.2442 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.3651 2.5305 -1.6436 36 1 2.8336 1.5524 -1.9378 37 1 4.8960 2.8055 -1.9279 38 1 4.8884 2.1226 -0.2841 39 1 5.0275 4.9358 -0.0781 40 1 7.7709 5.2148 -3.7096 41 1 9.4704 6.4128 -1.5355 42 1 11.8611 5.8653 -1.7537 43 1 12.8342 4.0432 -0.4135 44 1 11.4156 2.7659 1.1419 45 1 9.0237 3.3100 1.3563 46 1 3.6324 3.7459 1.3464 47 1 1.9747 4.2124 0.8523 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413232395.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:30 Heat of formation + Delta-G solvation = -64.836336 kcal Electronic energy + Delta-G solvation = -28610.888736 eV Core-core repulsion = 24757.505450 eV Total energy + Delta-G solvation = -3853.383286 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61845 -40.57673 -39.15431 -37.77955 -36.01913 -35.51626 -33.95315 -32.66199 -31.32562 -30.75888 -29.31214 -28.78418 -26.69923 -25.45719 -24.21781 -22.93503 -22.31702 -21.74384 -20.95228 -20.25084 -18.68607 -17.93134 -17.77072 -17.04299 -16.99264 -16.60250 -16.47470 -16.27503 -15.80176 -15.44869 -15.35972 -14.98411 -14.66502 -14.49412 -14.34129 -14.17523 -14.06229 -13.86124 -13.77590 -13.59195 -13.31022 -13.01774 -12.88451 -12.69368 -12.57079 -12.46360 -12.33792 -12.16521 -12.07768 -11.86901 -11.77580 -11.44169 -11.14962 -10.83776 -10.52514 -10.14385 -9.75119 -9.57538 -9.44410 -9.10481 -8.05372 -6.23849 0.82639 0.92255 1.45501 1.51121 1.53662 1.57460 2.05688 2.38159 2.51662 2.80150 3.21513 3.32403 3.38307 3.55893 3.73270 3.94097 4.12735 4.26876 4.29818 4.34130 4.43340 4.47828 4.48762 4.59966 4.63933 4.65483 4.72398 4.77873 4.84169 4.85958 4.93116 4.97802 4.99451 5.12477 5.16407 5.19650 5.26102 5.42324 5.56081 5.60843 5.72880 5.85595 5.94671 5.98038 6.04679 6.09942 6.41939 6.52060 6.80020 7.13127 7.16272 7.43930 8.02207 8.94257 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.003411 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.426672 B = 8205.712034 C = 9442.644570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.113 3.887 3 N -0.617 5.617 4 C 0.112 3.888 5 C -0.097 4.097 6 H 0.129 0.871 7 C 0.143 3.857 8 N -0.725 5.725 9 C 0.555 3.445 10 O -0.591 6.591 11 C 0.046 3.954 12 H 0.064 0.936 13 C -0.536 4.536 14 H 0.072 0.928 15 C 0.043 3.957 16 N -0.874 5.874 17 Si 0.940 3.060 18 H -0.282 1.282 19 H -0.292 1.292 20 H -0.260 1.260 21 C -0.041 4.041 22 C -0.086 4.086 23 C -0.155 4.155 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.132 4.132 27 C -0.146 4.146 28 C 0.508 3.492 29 O -0.586 6.586 30 H 0.037 0.963 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.406 0.594 40 H 0.258 0.742 41 H 0.118 0.882 42 H 0.123 0.877 43 H 0.139 0.861 44 H 0.134 0.866 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 -3.551 0.630 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.009 4.009 3 N -0.350 5.350 4 C -0.010 4.010 5 C -0.116 4.116 6 H 0.147 0.853 7 C 0.018 3.982 8 N -0.377 5.377 9 C 0.344 3.656 10 O -0.471 6.471 11 C 0.024 3.976 12 H 0.082 0.918 13 C -0.573 4.573 14 H 0.090 0.910 15 C -0.161 4.161 16 N -0.508 5.508 17 Si 0.766 3.234 18 H -0.208 1.208 19 H -0.218 1.218 20 H -0.184 1.184 21 C -0.042 4.042 22 C -0.104 4.104 23 C -0.173 4.173 24 C -0.158 4.158 25 C -0.161 4.161 26 C -0.150 4.150 27 C -0.186 4.186 28 C 0.297 3.703 29 O -0.467 6.467 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.079 0.921 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.241 0.759 40 H 0.067 0.933 41 H 0.136 0.864 42 H 0.141 0.859 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.119 0.881 46 H 0.112 0.888 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.411 -4.671 0.704 11.433 hybrid contribution -0.112 0.839 -0.629 1.055 sum -10.523 -3.832 0.075 11.199 Atomic orbital electron populations 1.22075 0.94471 1.03259 1.01920 1.21520 0.95380 0.80569 1.03391 1.48506 1.64785 1.14270 1.07458 1.22267 1.00305 0.91908 0.86516 1.22357 0.92405 1.00949 0.95916 0.85278 1.21016 0.89867 0.88942 0.98342 1.45598 1.05823 1.19016 1.67310 1.20871 0.82292 0.87133 0.75283 1.90495 1.72682 1.35262 1.48614 1.18027 0.88995 0.93424 0.97130 0.91816 1.20928 1.48861 0.96459 0.91101 0.91030 1.25517 0.94019 0.97766 0.98788 1.70237 1.45705 1.25331 1.09543 0.85832 0.78506 0.80864 0.78177 1.20763 1.21798 1.18403 1.20017 0.96140 0.93887 0.94188 1.21393 0.92883 0.99795 0.96293 1.21368 0.95484 0.99529 1.00950 1.21206 1.00301 0.96752 0.97570 1.21192 0.93684 1.00755 1.00465 1.21042 0.95678 0.97577 1.00714 1.22456 1.04017 0.94917 0.97240 1.21412 0.75958 0.88852 0.84085 1.90670 1.56250 1.76672 1.23146 0.94390 0.91079 0.89835 0.88020 0.92080 0.87321 0.89130 0.93521 0.94766 0.75891 0.93276 0.86445 0.85871 0.84274 0.84829 0.88074 0.88753 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.24 71.98 0.74 -1.59 16 2 C 0.11 2.04 6.65 86.38 0.57 2.61 16 3 N -0.62 -13.13 2.93 -817.98 -2.40 -15.53 16 4 C 0.11 1.81 6.90 86.83 0.60 2.41 16 5 C -0.10 -1.95 3.22 -9.73 -0.03 -1.99 16 6 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 7 C 0.14 4.47 5.02 86.38 0.43 4.91 16 8 N -0.72 -26.87 5.01 -463.06 -2.32 -29.19 16 9 C 0.55 26.08 5.37 87.66 0.47 26.55 16 10 O -0.59 -32.35 15.15 -3.03 -0.05 -32.40 16 11 C 0.05 2.13 2.67 -13.03 -0.03 2.10 16 12 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 13 C -0.54 -25.27 7.61 25.60 0.19 -25.07 16 14 H 0.07 3.25 7.82 -2.92 -0.02 3.23 16 15 C 0.04 2.07 3.19 84.66 0.27 2.34 16 16 N -0.87 -46.13 10.42 21.45 0.22 -45.91 16 17 Si 0.94 38.62 29.54 68.60 2.03 40.65 16 18 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 21 C -0.04 -1.99 4.50 -19.86 -0.09 -2.08 16 22 C -0.09 -4.09 8.00 22.27 0.18 -3.91 16 23 C -0.16 -6.41 10.05 22.27 0.22 -6.18 16 24 C -0.14 -5.21 10.05 22.27 0.22 -4.99 16 25 C -0.14 -5.54 10.05 22.27 0.22 -5.31 16 26 C -0.13 -5.87 8.74 22.27 0.19 -5.67 16 27 C -0.15 -3.16 6.24 30.59 0.19 -2.97 16 28 C 0.51 13.97 8.02 87.90 0.71 14.68 16 29 O -0.59 -21.35 17.60 -3.04 -0.05 -21.40 16 30 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 1.35 7.93 -2.38 -0.02 1.33 16 35 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.39 7.91 -2.39 -0.02 1.37 16 37 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.41 13.14 8.08 -92.71 -0.75 12.39 16 40 H 0.26 13.53 8.31 -92.71 -0.77 12.75 16 41 H 0.12 5.94 4.98 -2.91 -0.01 5.93 16 42 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 43 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 44 H 0.13 4.24 8.06 -2.91 -0.02 4.21 16 45 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 46 H 0.09 2.34 7.40 -2.39 -0.02 2.33 16 47 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -71.58 384.55 2.72 -68.87 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: 0.22 Total: 39.08 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 5.06 Total: -4.17 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -4.49 Total: -90.63 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -0.10 Total: -53.80 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -71.58 2.72 -68.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413232395.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.031 kcal (2) G-P(sol) polarization free energy of solvation -71.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds