Wall clock time and date at job start Tue Mar 31 2020 15:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46937 * 2 1 4 4 C 1.53000 * 109.46903 * 119.99638 * 2 1 3 5 5 N 1.46502 * 109.46971 * 174.99975 * 4 2 1 6 6 C 1.46767 * 124.34543 * 90.00556 * 5 4 2 7 7 C 1.54483 * 105.54690 * 162.91883 * 6 5 4 8 8 C 1.54854 * 101.66215 * 25.43257 * 7 6 5 9 9 C 1.34420 * 124.35492 * 269.97486 * 5 4 2 10 10 O 1.21278 * 124.93756 * 0.45943 * 9 5 4 11 11 N 1.46499 * 109.47492 * 239.99751 * 2 1 3 12 12 C 1.34781 * 119.99731 * 85.00397 * 11 2 1 13 13 O 1.21276 * 120.00162 * 359.97438 * 12 11 2 14 14 C 1.50703 * 119.99952 * 180.02562 * 12 11 2 15 15 H 1.08999 * 109.47141 * 59.99470 * 14 12 11 16 16 C 1.50698 * 109.46913 * 300.00011 * 14 12 11 17 17 H 1.08002 * 119.99810 * 329.17922 * 16 14 12 18 18 C 1.37872 * 120.00537 * 149.18534 * 16 14 12 19 19 N 1.31511 * 120.00458 * 173.36583 * 18 16 14 20 20 Si 1.86806 * 119.99649 * 353.36847 * 18 16 14 21 21 H 1.48506 * 109.46950 * 84.83996 * 20 18 16 22 22 H 1.48496 * 109.47061 * 204.83770 * 20 18 16 23 23 H 1.48496 * 109.47084 * 324.84066 * 20 18 16 24 24 C 1.50692 * 109.47278 * 179.97438 * 14 12 11 25 25 C 1.38239 * 120.00112 * 65.08254 * 24 14 12 26 26 C 1.38239 * 120.00059 * 179.79222 * 25 24 14 27 27 C 1.38230 * 119.99904 * 0.43813 * 26 25 24 28 28 C 1.38241 * 120.00130 * 359.81659 * 27 26 25 29 29 C 1.38228 * 119.99969 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47232 * 300.00151 * 1 2 3 32 32 H 1.09004 * 109.46975 * 60.00470 * 1 2 3 33 33 H 1.09002 * 109.47127 * 55.00673 * 4 2 1 34 34 H 1.08994 * 109.47650 * 295.00164 * 4 2 1 35 35 H 1.09004 * 110.24563 * 281.95459 * 6 5 4 36 36 H 1.08997 * 110.24657 * 43.87345 * 6 5 4 37 37 H 1.09005 * 110.97160 * 143.57507 * 7 6 5 38 38 H 1.08999 * 110.96881 * 267.33286 * 7 6 5 39 39 H 1.09001 * 110.47035 * 216.51843 * 8 7 6 40 40 H 1.08997 * 110.60479 * 93.93577 * 8 7 6 41 41 H 0.97003 * 120.00255 * 265.00021 * 11 2 1 42 42 H 0.97006 * 120.00024 * 179.97438 * 19 18 16 43 43 H 1.07998 * 119.99846 * 359.97438 * 25 24 14 44 44 H 1.07996 * 119.99643 * 180.28133 * 26 25 24 45 45 H 1.08005 * 120.00136 * 179.84171 * 27 26 25 46 46 H 1.08004 * 120.00016 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.00529 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.4248 0.1773 1.7306 7 6 5.7909 -0.5355 1.8411 8 6 5.6567 -1.6384 0.7623 9 6 4.1648 -1.8545 0.6359 10 8 3.6442 -2.8154 0.1101 11 7 2.0184 -0.6906 -1.1961 12 6 2.1472 -0.0182 -2.3571 13 8 1.8584 1.1584 -2.4117 14 6 2.6491 -0.7288 -3.5877 15 1 1.9763 -1.5506 -3.8325 16 6 4.0304 -1.2715 -3.3261 17 1 4.6930 -0.7568 -2.6460 18 6 4.4484 -2.4251 -3.9548 19 7 5.6942 -2.8277 -3.8300 20 14 3.2452 -3.4162 -4.9843 21 1 3.1883 -2.8538 -6.3575 22 1 3.6949 -4.8301 -5.0467 23 1 1.8962 -3.3526 -4.3670 24 6 2.6994 0.2394 -4.7414 25 6 3.5702 1.3125 -4.7057 26 6 3.6194 2.1982 -5.7659 27 6 2.7915 2.0159 -6.8578 28 6 1.9170 0.9458 -6.8911 29 6 1.8708 0.0577 -5.8329 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1370 35 1 4.4968 1.0275 1.0523 36 1 4.0909 0.5073 2.7143 37 1 6.6073 0.1467 1.6037 38 1 5.9244 -0.9716 2.8311 39 1 6.1483 -2.5542 1.0903 40 1 6.0749 -1.3004 -0.1858 41 1 2.2491 -1.6318 -1.1525 42 1 5.9881 -3.6396 -4.2721 43 1 4.2141 1.4572 -3.8508 44 1 4.3029 3.0339 -5.7400 45 1 2.8281 2.7093 -7.6850 46 1 1.2698 0.8036 -7.7440 47 1 1.1880 -0.7786 -5.8591 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417628563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:31 Heat of formation + Delta-G solvation = -50.121854 kcal Electronic energy + Delta-G solvation = -29765.761526 eV Core-core repulsion = 25913.016308 eV Total energy + Delta-G solvation = -3852.745218 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23094 -39.18105 -37.90525 -36.10921 -35.35397 -33.54219 -32.00001 -31.40254 -30.17992 -30.06760 -27.53633 -27.32244 -26.11462 -23.63181 -22.05000 -21.80252 -21.63318 -20.37460 -19.35370 -19.02190 -17.04980 -16.71657 -16.48879 -16.08504 -15.90406 -15.61373 -14.80246 -14.51510 -14.39138 -13.89968 -13.68500 -13.42973 -13.40801 -13.17842 -13.06602 -12.69802 -12.61819 -12.56688 -12.43196 -12.25496 -12.02975 -11.96804 -11.70752 -11.54509 -11.28893 -11.06371 -10.93208 -10.91730 -10.80146 -10.38703 -10.18742 -9.83651 -9.45827 -9.39018 -8.83900 -8.61253 -8.54343 -8.27104 -8.06535 -7.74243 -6.19657 -4.21176 2.22021 2.28505 3.01836 3.18420 3.27091 3.31231 3.34375 3.67845 4.01661 4.33855 4.60338 4.62349 4.71167 4.88464 4.98854 5.13330 5.18767 5.29924 5.40093 5.45675 5.54129 5.60617 5.65449 5.69331 5.73830 5.79289 5.82347 5.84917 6.02075 6.03581 6.05913 6.23426 6.27559 6.34530 6.38714 6.41384 6.55159 6.73596 6.81534 6.91781 7.22940 7.25569 7.31727 7.37303 7.40581 7.67639 7.86906 8.29864 8.41799 8.59051 8.77315 9.21991 9.40573 10.91880 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.005204 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.422580 B = 5379.384533 C = 6246.160748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.123 3.877 3 H 0.083 0.917 4 C 0.121 3.879 5 N -0.623 5.623 6 C 0.105 3.895 7 C -0.131 4.131 8 C -0.153 4.153 9 C 0.527 3.473 10 O -0.516 6.516 11 N -0.721 5.721 12 C 0.537 3.463 13 O -0.566 6.566 14 C 0.020 3.980 15 H 0.066 0.934 16 C -0.504 4.504 17 H 0.078 0.922 18 C 0.092 3.908 19 N -0.880 5.880 20 Si 0.864 3.136 21 H -0.268 1.268 22 H -0.285 1.285 23 H -0.265 1.265 24 C -0.024 4.024 25 C -0.070 4.070 26 C -0.130 4.130 27 C -0.144 4.144 28 C -0.129 4.129 29 C -0.137 4.137 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.412 0.588 42 H 0.267 0.733 43 H 0.115 0.885 44 H 0.110 0.890 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.843 5.479 10.363 12.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 H 0.101 0.899 4 C -0.002 4.002 5 N -0.358 5.358 6 C -0.018 4.018 7 C -0.169 4.169 8 C -0.193 4.193 9 C 0.315 3.685 10 O -0.391 6.391 11 N -0.375 5.375 12 C 0.326 3.674 13 O -0.446 6.446 14 C -0.001 4.001 15 H 0.084 0.916 16 C -0.541 4.541 17 H 0.096 0.904 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.691 3.309 21 H -0.194 1.194 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.025 4.025 25 C -0.088 4.088 26 C -0.148 4.148 27 C -0.163 4.163 28 C -0.147 4.147 29 C -0.155 4.155 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.132 0.868 41 H 0.250 0.750 42 H 0.077 0.923 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.231 5.618 10.012 12.236 hybrid contribution -0.378 -0.979 -0.645 1.232 sum -4.610 4.639 9.368 11.425 Atomic orbital electron populations 1.22133 0.95415 1.02054 1.02345 1.21262 0.93756 0.97892 0.85482 0.89852 1.21683 0.79172 1.02029 0.97344 1.48160 1.05491 1.22313 1.59830 1.22012 0.89257 0.91727 0.98788 1.22606 0.96854 0.98072 0.99342 1.22344 0.94514 1.00667 1.01822 1.20789 0.89848 0.81542 0.76331 1.90711 1.74163 1.31480 1.42722 1.46090 1.67662 1.15179 1.08602 1.21075 0.74554 0.86721 0.85059 1.90566 1.51437 1.16692 1.85868 1.18511 0.99679 0.93894 0.88014 0.91619 1.20355 0.95732 1.09532 1.28471 0.90438 1.24876 0.94812 0.96724 0.94926 1.69833 1.15242 1.23649 1.42846 0.87010 0.82193 0.80011 0.81701 1.19372 1.21117 1.18979 1.20093 0.92846 0.94127 0.95431 1.20799 0.97227 0.93398 0.97426 1.21011 0.99630 0.99575 0.94579 1.20838 0.98308 0.98656 0.98451 1.20865 0.99744 0.95864 0.98209 1.20964 0.99927 0.99606 0.94992 0.92487 0.92134 0.91688 0.89736 0.89528 0.91274 0.90910 0.89419 0.90489 0.88561 0.86769 0.75013 0.92324 0.86692 0.87232 0.87408 0.87354 0.87574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.48 37.16 0.35 -1.76 16 2 C 0.12 1.87 2.88 -67.93 -0.20 1.67 16 3 H 0.08 1.36 7.58 -51.93 -0.39 0.97 16 4 C 0.12 1.51 5.54 -4.04 -0.02 1.49 16 5 N -0.62 -8.65 2.80 -172.41 -0.48 -9.13 16 6 C 0.11 1.12 7.34 -3.12 -0.02 1.10 16 7 C -0.13 -1.30 7.20 -24.98 -0.18 -1.48 16 8 C -0.15 -2.21 6.87 -26.62 -0.18 -2.39 16 9 C 0.53 9.11 7.32 -10.86 -0.08 9.03 16 10 O -0.52 -11.06 15.82 5.56 0.09 -10.97 16 11 N -0.72 -14.08 4.42 -53.80 -0.24 -14.31 16 12 C 0.54 12.08 7.00 -10.98 -0.08 12.00 16 13 O -0.57 -13.49 15.04 5.56 0.08 -13.41 16 14 C 0.02 0.49 1.91 -94.08 -0.18 0.31 16 15 H 0.07 1.59 4.90 -51.93 -0.25 1.34 16 16 C -0.50 -13.36 8.06 -34.44 -0.28 -13.64 16 17 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 18 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 19 N -0.88 -25.45 13.96 55.43 0.77 -24.68 16 20 Si 0.86 21.24 27.31 -169.99 -4.64 16.60 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.26 -6.23 6.33 56.52 0.36 -5.87 16 24 C -0.02 -0.56 4.24 -104.62 -0.44 -1.00 16 25 C -0.07 -1.58 8.26 -39.58 -0.33 -1.91 16 26 C -0.13 -2.53 10.05 -39.58 -0.40 -2.93 16 27 C -0.14 -2.63 10.05 -39.58 -0.40 -3.02 16 28 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 29 C -0.14 -2.92 9.67 -39.58 -0.38 -3.31 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 41 H 0.41 8.66 6.22 -40.82 -0.25 8.40 16 42 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.12 2.67 7.93 -52.49 -0.42 2.25 16 44 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 46 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 47 H 0.11 2.13 7.95 -52.49 -0.42 1.71 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -32.91 385.73 -9.16 -42.07 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.25 Total: 14.27 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -3.31 Total: -6.24 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: 0.05 Total: -48.12 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.17 Total: -24.38 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.64 Total: 16.60 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.91 -9.16 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417628563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.056 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds