Wall clock time and date at job start Tue Mar 31 2020 15:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46937 * 2 1 4 4 C 1.53000 * 109.46903 * 119.99638 * 2 1 3 5 5 N 1.46502 * 109.46971 * 174.99975 * 4 2 1 6 6 C 1.46767 * 124.34543 * 90.00556 * 5 4 2 7 7 C 1.54483 * 105.54690 * 162.91883 * 6 5 4 8 8 C 1.54854 * 101.66215 * 25.43257 * 7 6 5 9 9 C 1.34420 * 124.35492 * 269.97486 * 5 4 2 10 10 O 1.21278 * 124.93756 * 0.45943 * 9 5 4 11 11 N 1.46499 * 109.47492 * 239.99751 * 2 1 3 12 12 C 1.34781 * 119.99731 * 85.00397 * 11 2 1 13 13 O 1.21276 * 120.00162 * 359.97438 * 12 11 2 14 14 C 1.50703 * 119.99952 * 180.02562 * 12 11 2 15 15 H 1.08999 * 109.47141 * 59.99470 * 14 12 11 16 16 C 1.50698 * 109.46913 * 300.00011 * 14 12 11 17 17 H 1.08002 * 119.99810 * 329.17922 * 16 14 12 18 18 C 1.37872 * 120.00537 * 149.18534 * 16 14 12 19 19 N 1.31511 * 120.00458 * 173.36583 * 18 16 14 20 20 Si 1.86806 * 119.99649 * 353.36847 * 18 16 14 21 21 H 1.48506 * 109.46950 * 84.83996 * 20 18 16 22 22 H 1.48496 * 109.47061 * 204.83770 * 20 18 16 23 23 H 1.48496 * 109.47084 * 324.84066 * 20 18 16 24 24 C 1.50692 * 109.47278 * 179.97438 * 14 12 11 25 25 C 1.38239 * 120.00112 * 65.08254 * 24 14 12 26 26 C 1.38239 * 120.00059 * 179.79222 * 25 24 14 27 27 C 1.38230 * 119.99904 * 0.43813 * 26 25 24 28 28 C 1.38241 * 120.00130 * 359.81659 * 27 26 25 29 29 C 1.38228 * 119.99969 * 359.97438 * 28 27 26 30 30 H 1.08998 * 109.47084 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47232 * 300.00151 * 1 2 3 32 32 H 1.09004 * 109.46975 * 60.00470 * 1 2 3 33 33 H 1.09002 * 109.47127 * 55.00673 * 4 2 1 34 34 H 1.08994 * 109.47650 * 295.00164 * 4 2 1 35 35 H 1.09004 * 110.24563 * 281.95459 * 6 5 4 36 36 H 1.08997 * 110.24657 * 43.87345 * 6 5 4 37 37 H 1.09005 * 110.97160 * 143.57507 * 7 6 5 38 38 H 1.08999 * 110.96881 * 267.33286 * 7 6 5 39 39 H 1.09001 * 110.47035 * 216.51843 * 8 7 6 40 40 H 1.08997 * 110.60479 * 93.93577 * 8 7 6 41 41 H 0.97003 * 120.00255 * 265.00021 * 11 2 1 42 42 H 0.97006 * 120.00024 * 179.97438 * 19 18 16 43 43 H 1.07998 * 119.99846 * 359.97438 * 25 24 14 44 44 H 1.07996 * 119.99643 * 180.28133 * 26 25 24 45 45 H 1.08005 * 120.00136 * 179.84171 * 27 26 25 46 46 H 1.08004 * 120.00016 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.00529 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.4248 0.1773 1.7306 7 6 5.7909 -0.5355 1.8411 8 6 5.6567 -1.6384 0.7623 9 6 4.1648 -1.8545 0.6359 10 8 3.6442 -2.8154 0.1101 11 7 2.0184 -0.6906 -1.1961 12 6 2.1472 -0.0182 -2.3571 13 8 1.8584 1.1584 -2.4117 14 6 2.6491 -0.7288 -3.5877 15 1 1.9763 -1.5506 -3.8325 16 6 4.0304 -1.2715 -3.3261 17 1 4.6930 -0.7568 -2.6460 18 6 4.4484 -2.4251 -3.9548 19 7 5.6942 -2.8277 -3.8300 20 14 3.2452 -3.4162 -4.9843 21 1 3.1883 -2.8538 -6.3575 22 1 3.6949 -4.8301 -5.0467 23 1 1.8962 -3.3526 -4.3670 24 6 2.6994 0.2394 -4.7414 25 6 3.5702 1.3125 -4.7057 26 6 3.6194 2.1982 -5.7659 27 6 2.7915 2.0159 -6.8578 28 6 1.9170 0.9458 -6.8911 29 6 1.8708 0.0577 -5.8329 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6054 -1.7198 1.2952 34 1 1.7516 -0.1583 2.1370 35 1 4.4968 1.0275 1.0523 36 1 4.0909 0.5073 2.7143 37 1 6.6073 0.1467 1.6037 38 1 5.9244 -0.9716 2.8311 39 1 6.1483 -2.5542 1.0903 40 1 6.0749 -1.3004 -0.1858 41 1 2.2491 -1.6318 -1.1525 42 1 5.9881 -3.6396 -4.2721 43 1 4.2141 1.4572 -3.8508 44 1 4.3029 3.0339 -5.7400 45 1 2.8281 2.7093 -7.6850 46 1 1.2698 0.8036 -7.7440 47 1 1.1880 -0.7786 -5.8591 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417628563.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:30 Heat of formation + Delta-G solvation = -70.949510 kcal Electronic energy + Delta-G solvation = -29766.664681 eV Core-core repulsion = 25913.016308 eV Total energy + Delta-G solvation = -3853.648373 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53037 -40.80433 -39.48299 -37.46627 -36.70376 -35.50889 -33.45802 -33.15077 -31.64948 -31.48927 -29.29704 -28.41197 -27.19037 -25.59304 -23.49656 -23.26985 -22.79347 -21.81762 -20.94118 -20.34921 -19.12529 -18.20182 -17.79431 -17.58331 -17.29395 -17.02139 -16.38706 -16.10411 -15.98337 -15.43812 -15.26567 -14.92462 -14.63178 -14.58535 -14.54313 -14.38548 -14.12351 -13.89171 -13.79335 -13.58197 -13.50186 -13.28330 -13.01512 -12.96861 -12.77905 -12.72660 -12.24463 -12.15591 -12.06129 -12.01274 -11.81252 -11.66054 -11.42351 -10.86533 -10.76046 -10.52820 -9.98560 -9.66504 -9.59420 -9.37959 -8.34696 -6.38090 0.62521 0.69445 1.27925 1.29839 1.34881 1.66270 1.85568 2.10676 2.27429 2.51727 2.97141 3.15598 3.52831 3.66296 3.78692 4.04402 4.06826 4.12461 4.19883 4.21885 4.25926 4.31688 4.35795 4.37827 4.49704 4.56653 4.64157 4.68542 4.72178 4.80101 4.80660 4.87976 4.89354 5.01079 5.06806 5.18752 5.21979 5.25081 5.30078 5.40120 5.61340 5.67831 5.71600 5.79039 5.94181 6.17403 6.18673 6.28485 6.58507 6.68441 7.24922 7.27114 7.46055 8.79985 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011290 B = 0.005204 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.422580 B = 5379.384533 C = 6246.160748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.116 3.884 3 H 0.072 0.928 4 C 0.121 3.879 5 N -0.618 5.618 6 C 0.100 3.900 7 C -0.114 4.114 8 C -0.159 4.159 9 C 0.510 3.490 10 O -0.570 6.570 11 N -0.717 5.717 12 C 0.534 3.466 13 O -0.583 6.583 14 C 0.020 3.980 15 H 0.061 0.939 16 C -0.487 4.487 17 H 0.037 0.963 18 C 0.042 3.958 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.260 1.260 22 H -0.284 1.284 23 H -0.251 1.251 24 C -0.053 4.053 25 C -0.100 4.100 26 C -0.131 4.131 27 C -0.136 4.136 28 C -0.124 4.124 29 C -0.156 4.156 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.038 0.962 33 H 0.080 0.920 34 H 0.138 0.862 35 H 0.057 0.943 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.404 0.596 42 H 0.267 0.733 43 H 0.088 0.912 44 H 0.137 0.863 45 H 0.152 0.848 46 H 0.148 0.852 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 7.156 10.743 14.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.011 3.989 3 H 0.090 0.910 4 C -0.001 4.001 5 N -0.351 5.351 6 C -0.022 4.022 7 C -0.151 4.151 8 C -0.199 4.199 9 C 0.299 3.701 10 O -0.449 6.449 11 N -0.369 5.369 12 C 0.322 3.678 13 O -0.465 6.465 14 C -0.001 4.001 15 H 0.079 0.921 16 C -0.524 4.524 17 H 0.056 0.944 18 C -0.158 4.158 19 N -0.560 5.560 20 Si 0.737 3.263 21 H -0.185 1.185 22 H -0.210 1.210 23 H -0.175 1.175 24 C -0.054 4.054 25 C -0.118 4.118 26 C -0.149 4.149 27 C -0.153 4.153 28 C -0.142 4.142 29 C -0.174 4.174 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.057 0.943 33 H 0.099 0.901 34 H 0.156 0.844 35 H 0.076 0.924 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.241 0.759 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.155 0.845 45 H 0.170 0.830 46 H 0.165 0.835 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.990 7.347 10.442 14.104 hybrid contribution 0.177 -1.359 -0.734 1.555 sum -5.814 5.988 9.708 12.803 Atomic orbital electron populations 1.22057 0.93335 1.02624 1.03009 1.21613 0.95420 0.97107 0.84807 0.90981 1.21877 0.78224 1.02320 0.97677 1.48315 1.06582 1.21771 1.58409 1.22309 0.89010 0.90445 1.00468 1.22642 0.97139 0.96439 0.98923 1.22335 0.92851 1.02766 1.01929 1.21315 0.91167 0.81682 0.75909 1.90659 1.75296 1.33818 1.45170 1.46184 1.66688 1.14759 1.09307 1.20843 0.74811 0.86519 0.85652 1.90532 1.52571 1.17120 1.86248 1.18453 0.97649 0.94325 0.89692 0.92087 1.20246 0.96402 1.08905 1.26883 0.94438 1.25536 0.96159 0.97801 0.96326 1.69955 1.16957 1.24363 1.44682 0.86217 0.80921 0.78529 0.80607 1.18519 1.21021 1.17520 1.20070 0.94668 0.94806 0.95870 1.20770 0.97856 0.94960 0.98207 1.21356 1.00160 0.99410 0.93960 1.21347 0.96535 0.98742 0.98720 1.21340 0.99742 0.94846 0.98261 1.21205 1.00072 1.00858 0.95260 0.91953 0.88135 0.94272 0.90132 0.84445 0.92420 0.86468 0.87892 0.87478 0.88115 0.90356 0.75908 0.92407 0.89351 0.84539 0.83011 0.83469 0.86799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.48 71.98 0.68 -3.08 16 2 C 0.12 3.47 2.88 44.99 0.13 3.60 16 3 H 0.07 2.34 7.58 -2.39 -0.02 2.32 16 4 C 0.12 2.83 5.54 86.38 0.48 3.30 16 5 N -0.62 -16.81 2.80 -817.98 -2.29 -19.10 16 6 C 0.10 1.93 7.34 86.83 0.64 2.57 16 7 C -0.11 -2.10 7.20 31.73 0.23 -1.87 16 8 C -0.16 -4.84 6.87 30.66 0.21 -4.63 16 9 C 0.51 18.47 7.32 87.90 0.64 19.12 16 10 O -0.57 -26.04 15.82 -3.02 -0.05 -26.09 16 11 N -0.72 -29.15 4.42 -442.53 -1.96 -31.11 16 12 C 0.53 25.13 7.00 87.66 0.61 25.74 16 13 O -0.58 -28.84 15.04 -3.02 -0.05 -28.88 16 14 C 0.02 1.01 1.91 -13.03 -0.02 0.99 16 15 H 0.06 3.06 4.90 -2.39 -0.01 3.04 16 16 C -0.49 -27.52 8.06 25.60 0.21 -27.32 16 17 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 18 C 0.04 2.46 5.47 84.65 0.46 2.92 16 19 N -0.92 -56.33 13.96 21.44 0.30 -56.03 16 20 Si 0.91 44.85 27.31 68.60 1.87 46.72 16 21 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 23 H -0.25 -11.62 6.33 99.48 0.63 -10.99 16 24 C -0.05 -2.53 4.24 -19.87 -0.08 -2.62 16 25 C -0.10 -4.62 8.26 22.27 0.18 -4.44 16 26 C -0.13 -4.94 10.05 22.27 0.22 -4.71 16 27 C -0.14 -4.46 10.05 22.27 0.22 -4.23 16 28 C -0.12 -4.29 10.05 22.27 0.22 -4.07 16 29 C -0.16 -6.52 9.67 22.27 0.22 -6.30 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.08 2.00 7.93 -2.39 -0.02 1.99 16 34 H 0.14 1.86 8.14 -2.39 -0.02 1.85 16 35 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.40 17.94 6.22 -92.71 -0.58 17.36 16 42 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 43 H 0.09 4.42 7.93 -2.91 -0.02 4.40 16 44 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 45 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 46 H 0.15 3.92 8.06 -2.91 -0.02 3.89 16 47 H 0.11 4.45 7.95 -2.91 -0.02 4.43 16 Total: -1.00 -78.87 385.73 3.40 -75.47 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: 0.31 Total: 44.06 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 5.25 Total: -5.03 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -3.95 Total: -106.24 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -0.09 Total: -54.97 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.87 Total: 46.72 kcal Total: -78.87 3.40 -75.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417628563.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.520 kcal (2) G-P(sol) polarization free energy of solvation -78.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds