Wall clock time and date at job start Tue Mar 31 2020 15:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47215 * 2 1 4 4 C 1.53001 * 109.47144 * 239.99743 * 2 1 3 5 5 N 1.46501 * 109.47015 * 185.35863 * 4 2 1 6 6 C 1.46771 * 124.34757 * 95.52600 * 5 4 2 7 7 C 1.54478 * 105.46805 * 197.01589 * 6 5 4 8 8 C 1.54629 * 101.77060 * 334.58400 * 7 6 5 9 9 C 1.34410 * 124.35027 * 275.22288 * 5 4 2 10 10 O 1.21290 * 124.94252 * 359.57586 * 9 5 4 11 11 N 1.46504 * 109.46791 * 119.99929 * 2 1 3 12 12 C 1.34776 * 119.99583 * 277.36263 * 11 2 1 13 13 O 1.21277 * 120.00325 * 355.49629 * 12 11 2 14 14 C 1.50704 * 119.99489 * 175.48967 * 12 11 2 15 15 H 1.08991 * 109.47445 * 305.99952 * 14 12 11 16 16 C 1.50700 * 109.47159 * 66.00173 * 14 12 11 17 17 H 1.08000 * 119.99802 * 35.06539 * 16 14 12 18 18 C 1.37873 * 120.00223 * 215.06478 * 16 14 12 19 19 N 1.31511 * 119.99997 * 5.13033 * 18 16 14 20 20 Si 1.86802 * 120.00333 * 185.12715 * 18 16 14 21 21 H 1.48495 * 109.47039 * 64.99460 * 20 18 16 22 22 H 1.48499 * 109.47126 * 184.99718 * 20 18 16 23 23 H 1.48497 * 109.47063 * 304.99770 * 20 18 16 24 24 C 1.50703 * 109.46963 * 185.99590 * 14 12 11 25 25 C 1.38228 * 120.00134 * 300.52235 * 24 14 12 26 26 C 1.38240 * 119.99979 * 179.80836 * 25 24 14 27 27 C 1.38237 * 119.99857 * 0.39609 * 26 25 24 28 28 C 1.38231 * 119.99839 * 359.85360 * 27 26 25 29 29 C 1.38236 * 119.99611 * 120.78842 * 24 14 12 30 30 H 1.09001 * 109.47412 * 60.00351 * 1 2 3 31 31 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47490 * 299.99963 * 1 2 3 33 33 H 1.09006 * 109.47058 * 305.35558 * 4 2 1 34 34 H 1.09002 * 109.47386 * 65.35970 * 4 2 1 35 35 H 1.09000 * 110.24544 * 316.01503 * 6 5 4 36 36 H 1.08996 * 110.24621 * 77.92539 * 6 5 4 37 37 H 1.08997 * 110.97152 * 92.70395 * 7 6 5 38 38 H 1.09006 * 110.97033 * 216.46426 * 7 6 5 39 39 H 1.08995 * 110.48661 * 143.47861 * 8 7 6 40 40 H 1.09006 * 110.48309 * 265.98998 * 8 7 6 41 41 H 0.97000 * 120.00272 * 97.37531 * 11 2 1 42 42 H 0.97001 * 120.00219 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.00368 * 359.97438 * 25 24 14 44 44 H 1.07999 * 120.00287 * 180.22855 * 26 25 24 45 45 H 1.07997 * 119.99741 * 179.83678 * 27 26 25 46 46 H 1.08005 * 120.00056 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.00430 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.4993 -0.8340 -1.1864 6 6 4.2181 -2.0116 -0.6858 7 6 5.6567 -1.5260 -0.4013 8 6 5.7799 -0.3230 -1.3650 9 6 4.3519 0.1254 -1.5853 10 8 4.0241 1.1961 -2.0515 11 7 2.0182 -0.6906 1.1962 12 6 2.1018 -0.0306 2.3684 13 8 1.8510 1.1550 2.4160 14 6 2.5066 -0.7661 3.6199 15 1 1.8570 -1.6299 3.7600 16 6 3.9354 -1.2277 3.4913 17 1 4.6546 -0.6179 2.9646 18 6 4.3246 -2.4284 4.0460 19 7 3.4299 -3.2180 4.5990 20 14 6.1226 -2.9339 4.0122 21 1 6.9177 -1.9903 4.8383 22 1 6.2609 -4.3078 4.5585 23 1 6.6185 -2.9055 2.6128 24 6 2.3812 0.1546 4.8064 25 6 3.1076 1.3298 4.8492 26 6 2.9895 2.1762 5.9357 27 6 2.1510 1.8434 6.9832 28 6 1.4285 0.6656 6.9427 29 6 1.5437 -0.1789 5.8544 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6004 -1.7176 -1.2984 34 1 1.7572 -0.1551 -2.1367 35 1 3.7544 -2.3749 0.2313 36 1 4.2262 -2.7977 -1.4408 37 1 5.7631 -1.2076 0.6356 38 1 6.3851 -2.2989 -0.6471 39 1 6.3667 0.4736 -0.9077 40 1 6.2300 -0.6340 -2.3078 41 1 2.2815 -1.6228 1.1446 42 1 3.7036 -4.0629 4.9889 43 1 3.7654 1.5881 4.0325 44 1 3.5542 3.0963 5.9675 45 1 2.0608 2.5034 7.8333 46 1 0.7738 0.4053 7.7613 47 1 0.9791 -1.0990 5.8228 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417628564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:35 Heat of formation + Delta-G solvation = -55.176680 kcal Electronic energy + Delta-G solvation = -29558.589117 eV Core-core repulsion = 25705.624705 eV Total energy + Delta-G solvation = -3852.964412 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.33188 -39.13292 -37.82765 -36.31027 -35.28810 -33.66528 -32.11642 -31.13937 -30.16755 -29.92791 -27.41435 -27.24568 -26.14948 -24.00394 -21.93495 -21.77664 -21.57477 -20.45584 -19.32058 -19.21933 -16.87157 -16.62711 -16.61569 -16.00777 -15.84025 -15.71652 -14.76474 -14.57459 -14.27453 -13.86813 -13.83915 -13.70360 -13.50860 -13.31501 -12.87853 -12.80309 -12.54359 -12.39887 -12.37194 -12.09410 -11.97032 -11.74754 -11.60474 -11.49395 -11.32145 -11.12226 -11.08851 -10.90325 -10.78812 -10.45540 -10.26068 -9.98616 -9.63213 -9.52288 -8.82198 -8.66340 -8.57119 -8.26166 -7.93329 -7.62413 -6.33139 -4.38133 2.37204 2.40200 2.73220 3.11069 3.12167 3.20546 3.23138 3.74772 3.99468 4.22730 4.45822 4.62842 4.81575 4.91425 5.00367 5.05044 5.12057 5.21705 5.45836 5.51237 5.60467 5.63548 5.71476 5.72013 5.79147 5.83438 5.87731 5.93030 5.94588 6.13326 6.22404 6.23562 6.35392 6.41949 6.51833 6.59602 6.67509 6.86636 6.97361 7.14429 7.19917 7.30948 7.37287 7.44968 7.57845 7.75698 7.94099 8.04786 8.32143 8.38905 8.66138 9.23962 9.29866 10.75045 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.005262 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.119155 B = 5319.903265 C = 6709.497601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.123 3.877 3 H 0.086 0.914 4 C 0.121 3.879 5 N -0.611 5.611 6 C 0.101 3.899 7 C -0.132 4.132 8 C -0.154 4.154 9 C 0.519 3.481 10 O -0.539 6.539 11 N -0.723 5.723 12 C 0.529 3.471 13 O -0.565 6.565 14 C 0.050 3.950 15 H 0.090 0.910 16 C -0.509 4.509 17 H 0.060 0.940 18 C 0.076 3.924 19 N -0.879 5.879 20 Si 0.893 3.107 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.270 1.270 24 C -0.017 4.017 25 C -0.080 4.080 26 C -0.136 4.136 27 C -0.148 4.148 28 C -0.134 4.134 29 C -0.118 4.118 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.399 0.601 42 H 0.267 0.733 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -1.799 -8.038 8.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 H 0.104 0.896 4 C -0.001 4.001 5 N -0.345 5.345 6 C -0.022 4.022 7 C -0.170 4.170 8 C -0.194 4.194 9 C 0.307 3.693 10 O -0.416 6.416 11 N -0.376 5.376 12 C 0.319 3.681 13 O -0.443 6.443 14 C 0.029 3.971 15 H 0.108 0.892 16 C -0.547 4.547 17 H 0.078 0.922 18 C -0.129 4.129 19 N -0.515 5.515 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.195 1.195 24 C -0.018 4.018 25 C -0.098 4.098 26 C -0.154 4.154 27 C -0.166 4.166 28 C -0.152 4.152 29 C -0.137 4.137 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.235 0.765 42 H 0.077 0.923 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.822 -0.588 -8.160 8.222 hybrid contribution 1.136 -0.891 0.244 1.464 sum 0.315 -1.479 -7.917 8.060 Atomic orbital electron populations 1.22114 0.95292 1.01907 1.02477 1.21237 0.93741 0.98374 0.84970 0.89617 1.21705 0.78658 1.01569 0.98189 1.48161 1.05749 1.17442 1.63119 1.22169 0.92720 0.87395 0.99868 1.22610 0.95873 0.97337 1.01206 1.22307 0.95196 1.00279 1.01656 1.20900 0.88635 0.83313 0.76447 1.90702 1.82498 1.22630 1.45818 1.45965 1.68165 1.15263 1.08219 1.21608 0.73777 0.87202 0.85554 1.90585 1.50837 1.16277 1.86645 1.18122 0.99720 0.93843 0.85458 0.89240 1.20593 0.92522 1.04470 1.37081 0.92179 1.24932 0.97675 0.95913 0.94363 1.69864 1.33419 1.11143 1.37052 0.86638 0.84845 0.77740 0.78820 1.20072 1.21169 1.19548 1.20068 0.92144 0.93399 0.96187 1.20829 0.98356 0.93919 0.96721 1.20965 0.99997 0.99491 0.94955 1.20800 0.99516 0.97654 0.98677 1.20902 1.00620 0.95398 0.98285 1.20995 0.99371 0.99018 0.94283 0.92157 0.92510 0.91657 0.89800 0.89345 0.89272 0.91417 0.88902 0.89543 0.88254 0.88356 0.76533 0.92275 0.87155 0.87648 0.87753 0.87592 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.45 37.16 0.35 -1.80 16 2 C 0.12 1.92 2.89 -67.93 -0.20 1.72 16 3 H 0.09 1.65 7.59 -51.93 -0.39 1.26 16 4 C 0.12 1.52 5.44 -4.04 -0.02 1.50 16 5 N -0.61 -8.27 2.68 -172.40 -0.46 -8.73 16 6 C 0.10 1.18 7.12 -3.12 -0.02 1.16 16 7 C -0.13 -1.56 7.18 -25.10 -0.18 -1.74 16 8 C -0.15 -1.86 6.86 -26.74 -0.18 -2.04 16 9 C 0.52 8.08 8.02 -10.86 -0.09 7.99 16 10 O -0.54 -10.42 17.67 5.55 0.10 -10.32 16 11 N -0.72 -12.69 4.70 -53.81 -0.25 -12.95 16 12 C 0.53 11.44 6.91 -10.98 -0.08 11.36 16 13 O -0.56 -13.72 14.53 5.56 0.08 -13.64 16 14 C 0.05 1.14 2.44 -94.07 -0.23 0.91 16 15 H 0.09 2.17 6.97 -51.93 -0.36 1.80 16 16 C -0.51 -12.00 7.90 -34.44 -0.27 -12.27 16 17 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 18 C 0.08 1.80 5.45 -17.82 -0.10 1.71 16 19 N -0.88 -21.85 12.77 55.43 0.71 -21.14 16 20 Si 0.89 18.63 29.54 -169.99 -5.02 13.61 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 24 C -0.02 -0.39 4.45 -104.62 -0.47 -0.86 16 25 C -0.08 -1.81 7.97 -39.58 -0.32 -2.13 16 26 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 27 C -0.15 -2.77 10.05 -39.58 -0.40 -3.17 16 28 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 29 C -0.12 -2.57 9.67 -39.58 -0.38 -2.95 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 34 H 0.09 1.08 8.04 -51.93 -0.42 0.66 16 35 H 0.09 1.14 6.31 -51.93 -0.33 0.81 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.40 6.57 6.60 -40.82 -0.27 6.30 16 42 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 43 H 0.11 2.58 7.82 -52.49 -0.41 2.17 16 44 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 45 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 46 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 47 H 0.11 2.38 7.95 -52.49 -0.42 1.96 16 LS Contribution 389.95 15.07 5.88 5.88 Total: -1.00 -30.14 389.95 -9.56 -39.70 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -7.22 Total: 14.30 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -3.37 Total: -6.71 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.01 Total: -42.81 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: 0.18 Total: -23.96 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.02 Total: 13.61 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.14 -9.56 -39.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417628564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.479 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds