Wall clock time and date at job start Tue Mar 31 2020 15:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08992 * 109.47215 * 2 1 4 4 C 1.53001 * 109.47144 * 239.99743 * 2 1 3 5 5 N 1.46501 * 109.47015 * 185.35863 * 4 2 1 6 6 C 1.46771 * 124.34757 * 95.52600 * 5 4 2 7 7 C 1.54478 * 105.46805 * 197.01589 * 6 5 4 8 8 C 1.54629 * 101.77060 * 334.58400 * 7 6 5 9 9 C 1.34410 * 124.35027 * 275.22288 * 5 4 2 10 10 O 1.21290 * 124.94252 * 359.57586 * 9 5 4 11 11 N 1.46504 * 109.46791 * 119.99929 * 2 1 3 12 12 C 1.34776 * 119.99583 * 277.36263 * 11 2 1 13 13 O 1.21277 * 120.00325 * 355.49629 * 12 11 2 14 14 C 1.50704 * 119.99489 * 175.48967 * 12 11 2 15 15 H 1.08991 * 109.47445 * 305.99952 * 14 12 11 16 16 C 1.50700 * 109.47159 * 66.00173 * 14 12 11 17 17 H 1.08000 * 119.99802 * 35.06539 * 16 14 12 18 18 C 1.37873 * 120.00223 * 215.06478 * 16 14 12 19 19 N 1.31511 * 119.99997 * 5.13033 * 18 16 14 20 20 Si 1.86802 * 120.00333 * 185.12715 * 18 16 14 21 21 H 1.48495 * 109.47039 * 64.99460 * 20 18 16 22 22 H 1.48499 * 109.47126 * 184.99718 * 20 18 16 23 23 H 1.48497 * 109.47063 * 304.99770 * 20 18 16 24 24 C 1.50703 * 109.46963 * 185.99590 * 14 12 11 25 25 C 1.38228 * 120.00134 * 300.52235 * 24 14 12 26 26 C 1.38240 * 119.99979 * 179.80836 * 25 24 14 27 27 C 1.38237 * 119.99857 * 0.39609 * 26 25 24 28 28 C 1.38231 * 119.99839 * 359.85360 * 27 26 25 29 29 C 1.38236 * 119.99611 * 120.78842 * 24 14 12 30 30 H 1.09001 * 109.47412 * 60.00351 * 1 2 3 31 31 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47490 * 299.99963 * 1 2 3 33 33 H 1.09006 * 109.47058 * 305.35558 * 4 2 1 34 34 H 1.09002 * 109.47386 * 65.35970 * 4 2 1 35 35 H 1.09000 * 110.24544 * 316.01503 * 6 5 4 36 36 H 1.08996 * 110.24621 * 77.92539 * 6 5 4 37 37 H 1.08997 * 110.97152 * 92.70395 * 7 6 5 38 38 H 1.09006 * 110.97033 * 216.46426 * 7 6 5 39 39 H 1.08995 * 110.48661 * 143.47861 * 8 7 6 40 40 H 1.09006 * 110.48309 * 265.98998 * 8 7 6 41 41 H 0.97000 * 120.00272 * 97.37531 * 11 2 1 42 42 H 0.97001 * 120.00219 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.00368 * 359.97438 * 25 24 14 44 44 H 1.07999 * 120.00287 * 180.22855 * 26 25 24 45 45 H 1.07997 * 119.99741 * 179.83678 * 27 26 25 46 46 H 1.08005 * 120.00056 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.00430 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.4993 -0.8340 -1.1864 6 6 4.2181 -2.0116 -0.6858 7 6 5.6567 -1.5260 -0.4013 8 6 5.7799 -0.3230 -1.3650 9 6 4.3519 0.1254 -1.5853 10 8 4.0241 1.1961 -2.0515 11 7 2.0182 -0.6906 1.1962 12 6 2.1018 -0.0306 2.3684 13 8 1.8510 1.1550 2.4160 14 6 2.5066 -0.7661 3.6199 15 1 1.8570 -1.6299 3.7600 16 6 3.9354 -1.2277 3.4913 17 1 4.6546 -0.6179 2.9646 18 6 4.3246 -2.4284 4.0460 19 7 3.4299 -3.2180 4.5990 20 14 6.1226 -2.9339 4.0122 21 1 6.9177 -1.9903 4.8383 22 1 6.2609 -4.3078 4.5585 23 1 6.6185 -2.9055 2.6128 24 6 2.3812 0.1546 4.8064 25 6 3.1076 1.3298 4.8492 26 6 2.9895 2.1762 5.9357 27 6 2.1510 1.8434 6.9832 28 6 1.4285 0.6656 6.9427 29 6 1.5437 -0.1789 5.8544 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.6004 -1.7176 -1.2984 34 1 1.7572 -0.1551 -2.1367 35 1 3.7544 -2.3749 0.2313 36 1 4.2262 -2.7977 -1.4408 37 1 5.7631 -1.2076 0.6356 38 1 6.3851 -2.2989 -0.6471 39 1 6.3667 0.4736 -0.9077 40 1 6.2300 -0.6340 -2.3078 41 1 2.2815 -1.6228 1.1446 42 1 3.7036 -4.0629 4.9889 43 1 3.7654 1.5881 4.0325 44 1 3.5542 3.0963 5.9675 45 1 2.0608 2.5034 7.8333 46 1 0.7738 0.4053 7.7613 47 1 0.9791 -1.0990 5.8228 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417628564.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:34 Heat of formation + Delta-G solvation = -72.263661 kcal Electronic energy + Delta-G solvation = -29559.330064 eV Core-core repulsion = 25705.624705 eV Total energy + Delta-G solvation = -3853.705359 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52799 -40.74971 -39.41008 -37.61275 -36.61858 -35.48083 -33.38531 -32.84877 -31.54881 -31.47866 -28.95662 -28.43672 -27.24111 -25.79862 -23.38143 -23.17137 -22.80802 -21.92029 -20.95825 -20.40195 -18.64935 -18.00999 -17.81272 -17.51544 -17.23220 -17.11314 -16.35951 -16.02133 -15.84033 -15.41752 -15.34946 -14.93720 -14.77668 -14.52900 -14.42346 -14.12553 -14.00921 -13.86609 -13.62043 -13.39997 -13.34838 -13.13024 -12.99615 -12.85274 -12.83303 -12.71658 -12.36748 -12.16757 -12.07476 -11.94720 -11.81042 -11.65253 -11.30525 -10.84977 -10.66153 -10.36989 -9.98897 -9.61141 -9.56188 -9.27971 -8.17207 -6.27756 0.73210 0.78262 1.45020 1.50683 1.53853 1.55356 1.98535 2.08473 2.45757 2.54105 3.10551 3.27415 3.43661 3.65643 3.76193 4.04433 4.09124 4.19862 4.20432 4.27840 4.28921 4.38258 4.45569 4.51400 4.57207 4.58264 4.69310 4.74232 4.77499 4.86903 4.92504 4.95323 5.04776 5.06434 5.12435 5.20924 5.25765 5.36387 5.43893 5.58597 5.67225 5.74849 5.76588 5.82332 5.98937 6.13616 6.22081 6.38808 6.74372 6.83255 7.14636 7.38084 7.60475 8.90259 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010280 B = 0.005262 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.119155 B = 5319.903265 C = 6709.497601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.124 3.876 3 H 0.041 0.959 4 C 0.124 3.876 5 N -0.611 5.611 6 C 0.098 3.902 7 C -0.130 4.130 8 C -0.147 4.147 9 C 0.503 3.497 10 O -0.588 6.588 11 N -0.707 5.707 12 C 0.527 3.473 13 O -0.598 6.598 14 C 0.054 3.946 15 H 0.071 0.929 16 C -0.509 4.509 17 H 0.047 0.953 18 C 0.043 3.957 19 N -0.903 5.903 20 Si 0.942 3.058 21 H -0.291 1.291 22 H -0.285 1.285 23 H -0.242 1.242 24 C -0.045 4.045 25 C -0.106 4.106 26 C -0.139 4.139 27 C -0.143 4.143 28 C -0.130 4.130 29 C -0.140 4.140 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.406 0.594 42 H 0.267 0.733 43 H 0.088 0.912 44 H 0.131 0.869 45 H 0.146 0.854 46 H 0.141 0.859 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 -3.102 -8.315 8.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 H 0.060 0.940 4 C 0.001 3.999 5 N -0.342 5.342 6 C -0.024 4.024 7 C -0.168 4.168 8 C -0.187 4.187 9 C 0.293 3.707 10 O -0.469 6.469 11 N -0.360 5.360 12 C 0.316 3.684 13 O -0.479 6.479 14 C 0.033 3.967 15 H 0.089 0.911 16 C -0.547 4.547 17 H 0.065 0.935 18 C -0.159 4.159 19 N -0.539 5.539 20 Si 0.767 3.233 21 H -0.217 1.217 22 H -0.211 1.211 23 H -0.165 1.165 24 C -0.046 4.046 25 C -0.124 4.124 26 C -0.157 4.157 27 C -0.160 4.160 28 C -0.148 4.148 29 C -0.158 4.158 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.053 0.947 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.148 0.852 41 H 0.243 0.757 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.149 0.851 45 H 0.164 0.836 46 H 0.159 0.841 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.444 -1.948 -8.466 8.698 hybrid contribution 0.965 -0.434 0.387 1.127 sum 0.521 -2.382 -8.079 8.439 Atomic orbital electron populations 1.22037 0.93386 1.03349 1.02165 1.21341 0.95216 0.96274 0.85382 0.94047 1.21795 0.78457 1.03264 0.96354 1.48341 1.06146 1.17680 1.62072 1.22372 0.92148 0.87364 1.00468 1.22623 0.96908 0.97971 0.99258 1.22329 0.92939 1.00173 1.03219 1.21591 0.90443 0.82881 0.75829 1.90666 1.83503 1.24568 1.48171 1.45840 1.66920 1.15371 1.07832 1.21473 0.73727 0.86751 0.86458 1.90555 1.52552 1.17576 1.87250 1.18006 0.99025 0.93298 0.86385 0.91098 1.20553 0.92622 1.04413 1.37089 0.93495 1.25477 1.00806 0.95725 0.93921 1.69957 1.34848 1.11384 1.37758 0.85856 0.80695 0.76719 0.80055 1.21741 1.21069 1.16544 1.20219 0.93449 0.94073 0.96847 1.20796 0.99153 0.94958 0.97539 1.21310 1.00209 0.99815 0.94331 1.21258 0.97866 0.97737 0.99172 1.21314 1.00460 0.94893 0.98108 1.21139 0.99765 0.99764 0.95125 0.89721 0.90098 0.94714 0.86028 0.88658 0.90548 0.87533 0.92039 0.86264 0.88880 0.85176 0.75675 0.92329 0.89399 0.85091 0.83585 0.84141 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 9.45 71.98 0.68 -3.35 16 2 C 0.12 3.92 2.89 44.99 0.13 4.05 16 3 H 0.04 1.70 7.59 -2.39 -0.02 1.68 16 4 C 0.12 2.94 5.44 86.38 0.47 3.41 16 5 N -0.61 -15.88 2.68 -817.95 -2.19 -18.07 16 6 C 0.10 2.07 7.12 86.83 0.62 2.69 16 7 C -0.13 -2.80 7.18 31.65 0.23 -2.58 16 8 C -0.15 -3.35 6.86 30.59 0.21 -3.14 16 9 C 0.50 15.62 8.02 87.90 0.71 16.32 16 10 O -0.59 -23.40 17.67 -3.06 -0.05 -23.45 16 11 N -0.71 -25.62 4.70 -442.54 -2.08 -27.70 16 12 C 0.53 24.03 6.91 87.66 0.61 24.63 16 13 O -0.60 -30.90 14.53 -3.02 -0.04 -30.95 16 14 C 0.05 2.60 2.44 -13.03 -0.03 2.57 16 15 H 0.07 3.61 6.97 -2.39 -0.02 3.59 16 16 C -0.51 -24.84 7.90 25.60 0.20 -24.64 16 17 H 0.05 2.37 7.82 -2.91 -0.02 2.35 16 18 C 0.04 2.07 5.45 84.65 0.46 2.53 16 19 N -0.90 -45.48 12.77 21.45 0.27 -45.21 16 20 Si 0.94 37.95 29.54 68.60 2.03 39.98 16 21 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.29 -11.42 7.11 99.48 0.71 -10.71 16 23 H -0.24 -8.58 7.11 99.48 0.71 -7.87 16 24 C -0.04 -2.16 4.45 -19.87 -0.09 -2.25 16 25 C -0.11 -4.98 7.97 22.27 0.18 -4.80 16 26 C -0.14 -5.46 10.05 22.27 0.22 -5.23 16 27 C -0.14 -4.99 10.05 22.27 0.22 -4.77 16 28 C -0.13 -4.80 10.05 22.27 0.22 -4.58 16 29 C -0.14 -6.15 9.67 22.27 0.22 -5.94 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.12 2.01 8.13 -2.38 -0.02 1.99 16 34 H 0.10 2.20 8.04 -2.39 -0.02 2.18 16 35 H 0.08 1.84 6.31 -2.39 -0.02 1.82 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.12 1.80 8.14 -2.38 -0.02 1.79 16 39 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.13 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.41 13.50 6.60 -92.71 -0.61 12.89 16 42 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 43 H 0.09 4.39 7.82 -2.91 -0.02 4.37 16 44 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 45 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 46 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 47 H 0.11 4.76 7.95 -2.91 -0.02 4.73 16 Total: -1.00 -70.21 389.95 3.54 -66.67 By element: Atomic # 1 Polarization: 43.45 SS G_CDS: 0.36 Total: 43.81 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 5.25 Total: -5.07 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -4.00 Total: -90.98 kcal Atomic # 8 Polarization: -54.30 SS G_CDS: -0.10 Total: -54.40 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -70.21 3.54 -66.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417628564.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.599 kcal (2) G-P(sol) polarization free energy of solvation -70.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds