Wall clock time and date at job start Tue Mar 31 2020 15:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 C 1.53002 * 109.47266 * 239.99833 * 2 1 3 5 5 N 1.46500 * 109.47084 * 185.00267 * 4 2 1 6 6 C 1.46758 * 124.35214 * 89.99779 * 5 4 2 7 7 C 1.54481 * 105.47751 * 197.01499 * 6 5 4 8 8 C 1.54621 * 101.76616 * 334.58766 * 7 6 5 9 9 C 1.34419 * 124.34942 * 269.70264 * 5 4 2 10 10 O 1.21280 * 124.94228 * 359.57154 * 9 5 4 11 11 N 1.46501 * 109.47084 * 120.00002 * 2 1 3 12 12 C 1.34779 * 119.99662 * 275.00439 * 11 2 1 13 13 O 1.21280 * 120.00198 * 359.97438 * 12 11 2 14 14 C 1.50709 * 119.99756 * 180.02562 * 12 11 2 15 15 H 1.09000 * 109.47027 * 59.99194 * 14 12 11 16 16 C 1.50697 * 109.46544 * 299.99435 * 14 12 11 17 17 H 1.07995 * 120.00361 * 333.16802 * 16 14 12 18 18 C 1.37885 * 119.99590 * 153.17060 * 16 14 12 19 19 N 1.31513 * 119.99940 * 6.15164 * 18 16 14 20 20 Si 1.86807 * 119.99748 * 186.43242 * 18 16 14 21 21 H 1.48502 * 109.46673 * 269.72058 * 20 18 16 22 22 H 1.48498 * 109.47262 * 29.71845 * 20 18 16 23 23 H 1.48500 * 109.47035 * 149.72396 * 20 18 16 24 24 C 1.50697 * 109.46969 * 179.97438 * 14 12 11 25 25 C 1.38233 * 120.00580 * 66.38602 * 24 14 12 26 26 C 1.38229 * 120.00232 * 179.78832 * 25 24 14 27 27 C 1.38234 * 119.99914 * 0.44527 * 26 25 24 28 28 C 1.38228 * 120.00041 * 359.80679 * 27 26 25 29 29 C 1.38233 * 119.99478 * 246.66180 * 24 14 12 30 30 H 1.08997 * 109.47471 * 300.00323 * 1 2 3 31 31 H 1.09000 * 109.46536 * 60.00236 * 1 2 3 32 32 H 1.08995 * 109.47174 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47130 * 305.00298 * 4 2 1 34 34 H 1.09001 * 109.47038 * 65.00273 * 4 2 1 35 35 H 1.09001 * 110.25012 * 316.01909 * 6 5 4 36 36 H 1.09006 * 110.24489 * 77.92700 * 6 5 4 37 37 H 1.09008 * 110.96564 * 92.70320 * 7 6 5 38 38 H 1.08995 * 110.97082 * 216.46517 * 7 6 5 39 39 H 1.08993 * 110.49006 * 143.47162 * 8 7 6 40 40 H 1.08996 * 110.48779 * 265.98834 * 8 7 6 41 41 H 0.97001 * 120.00216 * 94.99557 * 11 2 1 42 42 H 0.96992 * 119.99891 * 355.80870 * 19 18 16 43 43 H 1.08002 * 119.99342 * 359.97438 * 25 24 14 44 44 H 1.08000 * 120.00040 * 180.27839 * 26 25 24 45 45 H 1.08001 * 120.00097 * 179.83925 * 27 26 25 46 46 H 1.07997 * 120.00375 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.00245 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.2258 -1.9488 -0.5842 7 6 5.6665 -1.4369 -0.3633 8 6 5.7780 -0.3341 -1.4413 9 6 4.3472 0.0899 -1.6900 10 8 4.0131 1.1095 -2.2554 11 7 2.0183 -0.6906 1.1962 12 6 2.1469 -0.0182 2.3572 13 8 1.8588 1.1586 2.4115 14 6 2.6498 -0.7285 3.5876 15 1 3.6491 -1.1203 3.3979 16 6 1.7204 -1.8653 3.9263 17 1 0.6817 -1.8191 3.6342 18 6 2.1962 -2.9646 4.6092 19 7 3.4277 -2.9696 5.0708 20 14 1.0941 -4.4499 4.8720 21 1 0.3518 -4.2956 6.1489 22 1 0.1291 -4.5553 3.7482 23 1 1.9252 -5.6792 4.9280 24 6 2.7009 0.2400 4.7410 25 6 1.5303 0.7679 5.2527 26 6 1.5769 1.6529 6.3136 27 6 2.7947 2.0170 6.8568 28 6 3.9656 1.4932 6.3418 29 6 3.9188 0.6048 5.2837 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1370 35 1 3.7719 -2.2208 0.3687 36 1 4.2276 -2.8051 -1.2586 37 1 5.7827 -1.0183 0.6365 38 1 6.3934 -2.2297 -0.5395 39 1 6.3681 0.5039 -1.0702 40 1 6.2190 -0.7356 -2.3536 41 1 2.2490 -1.6318 1.1527 42 1 4.0205 -2.2264 4.8788 43 1 0.5791 0.4866 4.8255 44 1 0.6620 2.0618 6.7162 45 1 2.8314 2.7105 7.6840 46 1 4.9171 1.7773 6.7665 47 1 4.8336 0.1955 4.8813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417628565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:38 Heat of formation + Delta-G solvation = -56.886385 kcal Electronic energy + Delta-G solvation = -29365.447777 eV Core-core repulsion = 25512.409227 eV Total energy + Delta-G solvation = -3853.038550 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.49088 -39.28886 -37.95826 -36.47347 -35.40035 -34.00670 -32.27350 -30.95576 -30.27444 -30.04484 -27.59392 -27.09457 -26.23221 -23.79589 -22.12841 -21.89660 -21.63149 -20.58325 -19.55658 -19.39961 -17.46513 -16.77605 -16.66987 -16.19969 -15.95174 -15.66410 -14.87561 -14.55598 -14.25056 -13.93352 -13.89442 -13.84559 -13.55548 -13.48075 -13.03796 -12.95831 -12.74229 -12.54875 -12.39149 -12.26062 -12.02844 -11.94957 -11.74397 -11.59243 -11.45502 -11.10610 -11.03402 -10.93244 -10.86453 -10.34381 -10.26072 -10.18284 -9.78550 -9.05467 -8.87084 -8.80087 -8.62901 -8.37086 -8.04411 -7.67626 -6.62145 -4.37635 2.26583 2.31512 2.58217 2.96433 3.30446 3.31459 3.47169 3.59876 3.88228 4.29260 4.34058 4.42266 4.71995 4.75794 4.87225 4.96021 5.08713 5.12172 5.35168 5.42149 5.47314 5.54247 5.63989 5.64542 5.65105 5.68532 5.74542 5.78552 5.85261 5.94199 6.02207 6.06258 6.30097 6.32515 6.38114 6.43928 6.55276 6.58014 6.85329 6.94595 7.04181 7.16538 7.27042 7.33464 7.55046 7.79542 7.92668 8.14922 8.16862 8.24976 8.55960 9.12854 9.34202 10.76528 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.004667 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.139953 B = 5998.081655 C = 6831.604743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.125 3.875 3 H 0.085 0.915 4 C 0.119 3.881 5 N -0.613 5.613 6 C 0.098 3.902 7 C -0.131 4.131 8 C -0.154 4.154 9 C 0.517 3.483 10 O -0.537 6.537 11 N -0.722 5.722 12 C 0.534 3.466 13 O -0.561 6.561 14 C 0.046 3.954 15 H 0.062 0.938 16 C -0.593 4.593 17 H 0.057 0.943 18 C 0.032 3.968 19 N -0.893 5.893 20 Si 1.069 2.931 21 H -0.286 1.286 22 H -0.286 1.286 23 H -0.283 1.283 24 C -0.019 4.019 25 C -0.078 4.078 26 C -0.132 4.132 27 C -0.146 4.146 28 C -0.128 4.128 29 C -0.127 4.127 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.399 0.601 42 H 0.273 0.727 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.108 0.892 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 -0.711 -9.516 9.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.018 3.982 3 H 0.103 0.897 4 C -0.003 4.003 5 N -0.346 5.346 6 C -0.025 4.025 7 C -0.169 4.169 8 C -0.195 4.195 9 C 0.305 3.695 10 O -0.414 6.414 11 N -0.375 5.375 12 C 0.323 3.677 13 O -0.440 6.440 14 C 0.024 3.976 15 H 0.079 0.921 16 C -0.631 4.631 17 H 0.076 0.924 18 C -0.175 4.175 19 N -0.527 5.527 20 Si 0.897 3.103 21 H -0.213 1.213 22 H -0.212 1.212 23 H -0.208 1.208 24 C -0.020 4.020 25 C -0.096 4.096 26 C -0.150 4.150 27 C -0.164 4.164 28 C -0.147 4.147 29 C -0.146 4.146 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.235 0.765 42 H 0.085 0.915 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.560 -0.825 -9.066 9.236 hybrid contribution 0.067 0.959 -0.480 1.074 sum 1.627 0.133 -9.546 9.685 Atomic orbital electron populations 1.22103 0.95047 1.02156 1.02462 1.21259 0.94112 0.98070 0.84724 0.89668 1.21752 0.78388 1.01790 0.98382 1.48190 1.05924 1.22361 1.58145 1.22210 0.92370 0.88848 0.99069 1.22584 0.96056 0.98457 0.99816 1.22313 0.95176 1.00895 1.01080 1.20933 0.88698 0.82561 0.77349 1.90711 1.82255 1.25186 1.43263 1.45996 1.68656 1.13916 1.08949 1.21285 0.75617 0.86321 0.84495 1.90600 1.51302 1.16808 1.85256 1.18139 0.99245 0.93172 0.87007 0.92069 1.21561 0.96529 1.01752 1.43214 0.92429 1.25839 0.98501 1.00711 0.92468 1.70763 1.06760 1.35648 1.39522 0.83524 0.74815 0.75385 0.76601 1.21277 1.21234 1.20809 1.20096 0.92169 0.93028 0.96707 1.20774 0.98309 0.95448 0.95067 1.20983 0.97048 0.99359 0.97660 1.20819 0.92966 1.01766 1.00847 1.20877 0.97421 0.98729 0.97634 1.20946 0.97287 0.98578 0.97756 0.91553 0.92196 0.92315 0.89731 0.88922 0.89676 0.90936 0.89650 0.89084 0.88176 0.88075 0.76494 0.91491 0.87071 0.87433 0.87525 0.87427 0.87439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.48 37.16 0.35 -1.86 16 2 C 0.12 1.90 2.88 -67.93 -0.20 1.71 16 3 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 4 C 0.12 1.45 5.51 -4.04 -0.02 1.42 16 5 N -0.61 -7.65 2.75 -172.41 -0.47 -8.13 16 6 C 0.10 1.00 7.07 -3.12 -0.02 0.98 16 7 C -0.13 -1.22 7.18 -25.10 -0.18 -1.40 16 8 C -0.15 -1.58 6.86 -26.74 -0.18 -1.77 16 9 C 0.52 7.37 8.02 -10.85 -0.09 7.28 16 10 O -0.54 -9.77 17.59 5.56 0.10 -9.68 16 11 N -0.72 -12.46 4.40 -53.80 -0.24 -12.70 16 12 C 0.53 11.48 7.01 -10.98 -0.08 11.40 16 13 O -0.56 -13.64 15.09 5.56 0.08 -13.56 16 14 C 0.05 1.04 1.94 -94.07 -0.18 0.86 16 15 H 0.06 1.42 6.63 -51.93 -0.34 1.08 16 16 C -0.59 -14.36 7.45 -34.44 -0.26 -14.61 16 17 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 18 C 0.03 0.80 5.45 -17.82 -0.10 0.70 16 19 N -0.89 -23.69 13.63 55.43 0.76 -22.93 16 20 Si 1.07 22.54 29.91 -169.99 -5.08 17.45 16 21 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 24 C -0.02 -0.44 4.17 -104.63 -0.44 -0.88 16 25 C -0.08 -1.77 8.33 -39.59 -0.33 -2.10 16 26 C -0.13 -2.65 10.05 -39.59 -0.40 -3.05 16 27 C -0.15 -2.74 10.05 -39.59 -0.40 -3.14 16 28 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 29 C -0.13 -2.75 9.50 -39.58 -0.38 -3.13 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.11 7.92 -51.93 -0.41 0.69 16 35 H 0.09 0.97 5.95 -51.93 -0.31 0.66 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.40 6.40 6.39 -40.82 -0.26 6.14 16 42 H 0.27 7.18 6.48 -40.82 -0.26 6.92 16 43 H 0.11 2.59 7.88 -52.49 -0.41 2.17 16 44 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 45 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 47 H 0.11 2.17 7.96 -52.49 -0.42 1.75 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -32.12 387.73 -9.40 -41.52 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -7.09 Total: 12.65 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -3.29 Total: -10.47 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.04 Total: -43.76 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: 0.18 Total: -23.23 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.08 Total: 17.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.12 -9.40 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417628565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.367 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds