Wall clock time and date at job start Tue Mar 31 2020 15:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47255 * 2 1 4 4 C 1.53002 * 109.47266 * 239.99833 * 2 1 3 5 5 N 1.46500 * 109.47084 * 185.00267 * 4 2 1 6 6 C 1.46758 * 124.35214 * 89.99779 * 5 4 2 7 7 C 1.54481 * 105.47751 * 197.01499 * 6 5 4 8 8 C 1.54621 * 101.76616 * 334.58766 * 7 6 5 9 9 C 1.34419 * 124.34942 * 269.70264 * 5 4 2 10 10 O 1.21280 * 124.94228 * 359.57154 * 9 5 4 11 11 N 1.46501 * 109.47084 * 120.00002 * 2 1 3 12 12 C 1.34779 * 119.99662 * 275.00439 * 11 2 1 13 13 O 1.21280 * 120.00198 * 359.97438 * 12 11 2 14 14 C 1.50709 * 119.99756 * 180.02562 * 12 11 2 15 15 H 1.09000 * 109.47027 * 59.99194 * 14 12 11 16 16 C 1.50697 * 109.46544 * 299.99435 * 14 12 11 17 17 H 1.07995 * 120.00361 * 333.16802 * 16 14 12 18 18 C 1.37885 * 119.99590 * 153.17060 * 16 14 12 19 19 N 1.31513 * 119.99940 * 6.15164 * 18 16 14 20 20 Si 1.86807 * 119.99748 * 186.43242 * 18 16 14 21 21 H 1.48502 * 109.46673 * 269.72058 * 20 18 16 22 22 H 1.48498 * 109.47262 * 29.71845 * 20 18 16 23 23 H 1.48500 * 109.47035 * 149.72396 * 20 18 16 24 24 C 1.50697 * 109.46969 * 179.97438 * 14 12 11 25 25 C 1.38233 * 120.00580 * 66.38602 * 24 14 12 26 26 C 1.38229 * 120.00232 * 179.78832 * 25 24 14 27 27 C 1.38234 * 119.99914 * 0.44527 * 26 25 24 28 28 C 1.38228 * 120.00041 * 359.80679 * 27 26 25 29 29 C 1.38233 * 119.99478 * 246.66180 * 24 14 12 30 30 H 1.08997 * 109.47471 * 300.00323 * 1 2 3 31 31 H 1.09000 * 109.46536 * 60.00236 * 1 2 3 32 32 H 1.08995 * 109.47174 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47130 * 305.00298 * 4 2 1 34 34 H 1.09001 * 109.47038 * 65.00273 * 4 2 1 35 35 H 1.09001 * 110.25012 * 316.01909 * 6 5 4 36 36 H 1.09006 * 110.24489 * 77.92700 * 6 5 4 37 37 H 1.09008 * 110.96564 * 92.70320 * 7 6 5 38 38 H 1.08995 * 110.97082 * 216.46517 * 7 6 5 39 39 H 1.08993 * 110.49006 * 143.47162 * 8 7 6 40 40 H 1.08996 * 110.48779 * 265.98834 * 8 7 6 41 41 H 0.97001 * 120.00216 * 94.99557 * 11 2 1 42 42 H 0.96992 * 119.99891 * 355.80870 * 19 18 16 43 43 H 1.08002 * 119.99342 * 359.97438 * 25 24 14 44 44 H 1.08000 * 120.00040 * 180.27839 * 26 25 24 45 45 H 1.08001 * 120.00097 * 179.83925 * 27 26 25 46 46 H 1.07997 * 120.00375 * 180.02562 * 28 27 26 47 47 H 1.08000 * 120.00245 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.2258 -1.9488 -0.5842 7 6 5.6665 -1.4369 -0.3633 8 6 5.7780 -0.3341 -1.4413 9 6 4.3472 0.0899 -1.6900 10 8 4.0131 1.1095 -2.2554 11 7 2.0183 -0.6906 1.1962 12 6 2.1469 -0.0182 2.3572 13 8 1.8588 1.1586 2.4115 14 6 2.6498 -0.7285 3.5876 15 1 3.6491 -1.1203 3.3979 16 6 1.7204 -1.8653 3.9263 17 1 0.6817 -1.8191 3.6342 18 6 2.1962 -2.9646 4.6092 19 7 3.4277 -2.9696 5.0708 20 14 1.0941 -4.4499 4.8720 21 1 0.3518 -4.2956 6.1489 22 1 0.1291 -4.5553 3.7482 23 1 1.9252 -5.6792 4.9280 24 6 2.7009 0.2400 4.7410 25 6 1.5303 0.7679 5.2527 26 6 1.5769 1.6529 6.3136 27 6 2.7947 2.0170 6.8568 28 6 3.9656 1.4932 6.3418 29 6 3.9188 0.6048 5.2837 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7198 -1.2951 34 1 1.7517 -0.1583 -2.1370 35 1 3.7719 -2.2208 0.3687 36 1 4.2276 -2.8051 -1.2586 37 1 5.7827 -1.0183 0.6365 38 1 6.3934 -2.2297 -0.5395 39 1 6.3681 0.5039 -1.0702 40 1 6.2190 -0.7356 -2.3536 41 1 2.2490 -1.6318 1.1527 42 1 4.0205 -2.2264 4.8788 43 1 0.5791 0.4866 4.8255 44 1 0.6620 2.0618 6.7162 45 1 2.8314 2.7105 7.6840 46 1 4.9171 1.7773 6.7665 47 1 4.8336 0.1955 4.8813 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417628565.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:38 Heat of formation + Delta-G solvation = -75.649355 kcal Electronic energy + Delta-G solvation = -29366.261401 eV Core-core repulsion = 25512.409227 eV Total energy + Delta-G solvation = -3853.852174 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.61167 -40.88183 -39.53147 -37.70049 -36.68190 -35.85442 -33.46680 -32.67667 -31.66063 -31.56851 -28.82523 -28.48361 -27.28345 -25.66586 -23.49910 -23.23936 -22.84906 -22.03974 -21.20250 -20.49621 -19.22978 -18.00029 -17.79169 -17.66231 -17.34416 -17.06469 -16.30580 -16.11722 -15.71938 -15.60487 -15.29037 -14.98486 -14.86122 -14.69705 -14.52100 -14.32837 -14.07689 -13.94915 -13.83185 -13.57784 -13.32418 -13.15839 -13.06491 -12.91770 -12.84035 -12.58654 -12.40867 -12.15219 -11.96095 -11.89079 -11.88221 -11.80422 -10.91360 -10.90475 -10.62274 -10.52136 -10.11937 -9.67560 -9.65489 -9.35315 -8.60056 -6.35639 0.63387 0.69366 1.48836 1.59232 1.64050 1.82646 1.86575 1.99158 2.42189 2.59125 3.08417 3.22575 3.39084 3.59463 3.68352 3.97595 4.02825 4.08244 4.14805 4.19234 4.23432 4.27662 4.35157 4.37698 4.47516 4.53214 4.62310 4.65886 4.69481 4.73067 4.81649 4.85392 4.88614 4.96735 5.03186 5.15443 5.18161 5.24564 5.30342 5.51185 5.62206 5.67240 5.70735 5.75469 6.04932 6.08326 6.16617 6.29583 6.56150 6.69487 7.08847 7.41636 7.46717 8.78886 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009958 B = 0.004667 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.139953 B = 5998.081655 C = 6831.604743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 H 0.045 0.955 4 C 0.123 3.877 5 N -0.613 5.613 6 C 0.093 3.907 7 C -0.126 4.126 8 C -0.147 4.147 9 C 0.501 3.499 10 O -0.587 6.587 11 N -0.705 5.705 12 C 0.531 3.469 13 O -0.595 6.595 14 C 0.049 3.951 15 H 0.050 0.950 16 C -0.588 4.588 17 H 0.046 0.954 18 C -0.005 4.005 19 N -0.917 5.917 20 Si 1.109 2.891 21 H -0.289 1.289 22 H -0.265 1.265 23 H -0.280 1.280 24 C -0.047 4.047 25 C -0.107 4.107 26 C -0.135 4.135 27 C -0.142 4.142 28 C -0.127 4.127 29 C -0.150 4.150 30 H 0.032 0.968 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.130 0.870 41 H 0.407 0.593 42 H 0.265 0.735 43 H 0.092 0.908 44 H 0.135 0.865 45 H 0.149 0.851 46 H 0.142 0.858 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -1.981 -9.683 10.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.020 3.980 3 H 0.064 0.936 4 C 0.001 3.999 5 N -0.345 5.345 6 C -0.029 4.029 7 C -0.163 4.163 8 C -0.186 4.186 9 C 0.291 3.709 10 O -0.468 6.468 11 N -0.357 5.357 12 C 0.320 3.680 13 O -0.477 6.477 14 C 0.027 3.973 15 H 0.068 0.932 16 C -0.625 4.625 17 H 0.064 0.936 18 C -0.207 4.207 19 N -0.552 5.552 20 Si 0.932 3.068 21 H -0.216 1.216 22 H -0.190 1.190 23 H -0.205 1.205 24 C -0.048 4.048 25 C -0.126 4.126 26 C -0.153 4.153 27 C -0.160 4.160 28 C -0.145 4.145 29 C -0.168 4.168 30 H 0.051 0.949 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.137 0.863 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.082 0.918 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.148 0.852 41 H 0.245 0.755 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.153 0.847 45 H 0.166 0.834 46 H 0.160 0.840 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.784 -2.139 -9.256 9.666 hybrid contribution 0.003 1.439 -0.401 1.494 sum 1.787 -0.700 -9.657 9.846 Atomic orbital electron populations 1.22034 0.93665 1.03258 1.02066 1.21359 0.95182 0.96283 0.85183 0.93629 1.21779 0.78588 1.03204 0.96367 1.48376 1.06109 1.22656 1.57374 1.22433 0.92324 0.89037 0.99060 1.22614 0.96434 0.98943 0.98340 1.22344 0.92527 1.01148 1.02619 1.21700 0.90625 0.81988 0.76634 1.90674 1.83323 1.27190 1.45619 1.45873 1.67295 1.14092 1.08480 1.21142 0.75571 0.85908 0.85351 1.90569 1.53022 1.18177 1.85905 1.18051 0.98282 0.93060 0.87863 0.93230 1.21596 0.96010 1.02225 1.42676 0.93570 1.26950 0.98845 1.02947 0.91988 1.70852 1.07566 1.35674 1.41128 0.83012 0.73860 0.72890 0.77023 1.21614 1.18964 1.20491 1.20230 0.93178 0.94127 0.97252 1.20806 0.97396 0.97486 0.96887 1.21350 0.99111 0.98278 0.96598 1.21301 0.91956 1.01481 1.01247 1.21321 0.99439 0.97316 0.96441 1.21166 0.96847 0.99786 0.99007 0.94890 0.89642 0.90364 0.86320 0.88460 0.91072 0.87504 0.91771 0.85731 0.88419 0.85162 0.75525 0.92427 0.89009 0.84687 0.83378 0.83989 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 9.48 71.98 0.68 -3.51 16 2 C 0.13 3.91 2.88 44.99 0.13 4.04 16 3 H 0.05 1.80 7.58 -2.38 -0.02 1.78 16 4 C 0.12 2.84 5.51 86.38 0.48 3.32 16 5 N -0.61 -14.76 2.75 -817.97 -2.25 -17.01 16 6 C 0.09 1.73 7.07 86.83 0.61 2.34 16 7 C -0.13 -2.13 7.18 31.65 0.23 -1.91 16 8 C -0.15 -2.81 6.86 30.59 0.21 -2.60 16 9 C 0.50 14.23 8.02 87.90 0.71 14.93 16 10 O -0.59 -21.97 17.59 -3.03 -0.05 -22.02 16 11 N -0.70 -24.97 4.40 -442.51 -1.95 -26.92 16 12 C 0.53 23.95 7.01 87.66 0.61 24.57 16 13 O -0.60 -30.60 15.09 -3.03 -0.05 -30.65 16 14 C 0.05 2.32 1.94 -13.03 -0.03 2.29 16 15 H 0.05 2.43 6.63 -2.39 -0.02 2.41 16 16 C -0.59 -29.12 7.45 25.60 0.19 -28.93 16 17 H 0.05 2.35 7.82 -2.91 -0.02 2.33 16 18 C -0.01 -0.26 5.45 84.66 0.46 0.20 16 19 N -0.92 -49.28 13.63 21.45 0.29 -48.99 16 20 Si 1.11 44.96 29.91 68.60 2.05 47.01 16 21 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 23 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 24 C -0.05 -2.25 4.17 -19.87 -0.08 -2.34 16 25 C -0.11 -5.04 8.33 22.27 0.19 -4.86 16 26 C -0.14 -5.33 10.05 22.27 0.22 -5.10 16 27 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16 28 C -0.13 -4.74 10.05 22.27 0.22 -4.52 16 29 C -0.15 -6.57 9.50 22.27 0.21 -6.35 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.10 2.22 7.92 -2.39 -0.02 2.20 16 35 H 0.07 1.54 5.95 -2.39 -0.01 1.53 16 36 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.41 13.08 6.39 -92.71 -0.59 12.49 16 42 H 0.26 14.31 6.48 -92.71 -0.60 13.71 16 43 H 0.09 4.51 7.88 -2.91 -0.02 4.49 16 44 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 45 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 46 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 47 H 0.11 4.59 7.96 -2.91 -0.02 4.56 16 Total: -1.00 -73.82 387.73 3.87 -69.96 By element: Atomic # 1 Polarization: 41.28 SS G_CDS: 0.55 Total: 41.83 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 5.27 Total: -13.21 kcal Atomic # 7 Polarization: -89.01 SS G_CDS: -3.90 Total: -92.92 kcal Atomic # 8 Polarization: -52.57 SS G_CDS: -0.10 Total: -52.67 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.05 Total: 47.01 kcal Total: -73.82 3.87 -69.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417628565.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.692 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds