Wall clock time and date at job start Tue Mar 31 2020 15:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46973 * 2 1 4 4 C 1.52995 * 109.47174 * 120.00023 * 2 1 3 5 5 N 1.46501 * 109.47426 * 174.99907 * 4 2 1 6 6 C 1.46769 * 124.34652 * 89.99836 * 5 4 2 7 7 C 1.54478 * 105.54583 * 162.92429 * 6 5 4 8 8 C 1.54855 * 101.66245 * 25.43288 * 7 6 5 9 9 C 1.34414 * 124.35196 * 269.98179 * 5 4 2 10 10 O 1.21286 * 124.93708 * 0.44193 * 9 5 4 11 11 N 1.46494 * 109.47245 * 240.00312 * 2 1 3 12 12 C 1.34777 * 120.00408 * 84.99615 * 11 2 1 13 13 O 1.21280 * 119.99710 * 0.02562 * 12 11 2 14 14 C 1.50700 * 120.00148 * 180.02562 * 12 11 2 15 15 H 1.08999 * 109.46836 * 299.99789 * 14 12 11 16 16 C 1.50697 * 109.47117 * 60.00348 * 14 12 11 17 17 H 1.08004 * 120.00090 * 33.93757 * 16 14 12 18 18 C 1.37878 * 120.00047 * 213.94304 * 16 14 12 19 19 N 1.31518 * 119.99678 * 6.38770 * 18 16 14 20 20 Si 1.86795 * 120.00089 * 186.38847 * 18 16 14 21 21 H 1.48505 * 109.47160 * 60.00011 * 20 18 16 22 22 H 1.48507 * 109.47176 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47111 * 299.99859 * 20 18 16 24 24 C 1.50699 * 109.46916 * 180.02562 * 14 12 11 25 25 C 1.38231 * 120.00042 * 293.84650 * 24 14 12 26 26 C 1.38243 * 120.00276 * 179.78770 * 25 24 14 27 27 C 1.38234 * 119.99332 * 0.44230 * 26 25 24 28 28 C 1.38237 * 120.00277 * 359.81476 * 27 26 25 29 29 C 1.38227 * 120.00054 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47196 * 300.00219 * 1 2 3 31 31 H 1.08999 * 109.47080 * 59.99676 * 1 2 3 32 32 H 1.08993 * 109.47385 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47391 * 55.00185 * 4 2 1 34 34 H 1.08998 * 109.47280 * 295.00137 * 4 2 1 35 35 H 1.08996 * 110.24515 * 281.96596 * 6 5 4 36 36 H 1.08993 * 110.24705 * 43.87797 * 6 5 4 37 37 H 1.08998 * 110.97006 * 143.57827 * 7 6 5 38 38 H 1.09002 * 110.97049 * 267.34145 * 7 6 5 39 39 H 1.09001 * 110.47069 * 216.51729 * 8 7 6 40 40 H 1.08998 * 110.60247 * 93.93893 * 8 7 6 41 41 H 0.96999 * 119.99869 * 265.00441 * 11 2 1 42 42 H 0.97001 * 119.99907 * 180.02562 * 19 18 16 43 43 H 1.08003 * 120.00233 * 359.97438 * 25 24 14 44 44 H 1.07999 * 120.00325 * 180.27190 * 26 25 24 45 45 H 1.08005 * 119.99887 * 179.82764 * 27 26 25 46 46 H 1.08006 * 119.99779 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.00250 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.4249 0.1772 1.7305 7 6 5.7910 -0.5356 1.8409 8 6 5.6567 -1.6384 0.7621 9 6 4.1647 -1.8545 0.6357 10 8 3.6440 -2.8155 0.1099 11 7 2.0183 -0.6905 -1.1962 12 6 2.1470 -0.0182 -2.3571 13 8 1.8590 1.1587 -2.4115 14 6 2.6489 -0.7287 -3.5877 15 1 3.6480 -1.1212 -3.3986 16 6 1.7185 -1.8649 -3.9263 17 1 0.6593 -1.7702 -3.7374 18 6 2.2194 -3.0254 -4.4770 19 7 3.5191 -3.1915 -4.5910 20 14 1.0522 -4.3616 -5.0613 21 1 0.1652 -3.8159 -6.1199 22 1 1.8354 -5.4980 -5.6097 23 1 0.2282 -4.8330 -3.9194 24 6 2.7002 0.2398 -4.7411 25 6 1.5301 0.7724 -5.2491 26 6 1.5774 1.6642 -6.3043 27 6 2.7943 2.0164 -6.8574 28 6 3.9641 1.4798 -6.3528 29 6 3.9170 0.5914 -5.2949 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6054 -1.7198 1.2951 34 1 1.7516 -0.1583 2.1369 35 1 4.4968 1.0274 1.0523 36 1 4.0911 0.5073 2.7141 37 1 6.6072 0.1467 1.6035 38 1 5.9245 -0.9718 2.8308 39 1 6.1483 -2.5543 1.0900 40 1 6.0749 -1.3005 -0.1860 41 1 2.2490 -1.6317 -1.1526 42 1 3.8716 -4.0077 -4.9789 43 1 0.5790 0.4940 -4.8196 44 1 0.6635 2.0837 -6.6983 45 1 2.8312 2.7111 -7.6836 46 1 4.9149 1.7547 -6.7853 47 1 4.8310 0.1724 -4.9005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417628566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:42 Heat of formation + Delta-G solvation = -54.333761 kcal Electronic energy + Delta-G solvation = -29417.977483 eV Core-core repulsion = 25565.049622 eV Total energy + Delta-G solvation = -3852.927860 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.36567 -39.02559 -37.75906 -36.27524 -35.32392 -33.53304 -32.05825 -31.03109 -30.10420 -29.90248 -27.52519 -27.14241 -26.14464 -23.86879 -22.11181 -21.73791 -21.51034 -20.31261 -19.36774 -19.08804 -16.86189 -16.66953 -16.50811 -15.98701 -15.82599 -15.53386 -14.91942 -14.45184 -14.11231 -14.02102 -13.69234 -13.61295 -13.48390 -13.27393 -12.97510 -12.73634 -12.66174 -12.45864 -12.25345 -12.14253 -11.90505 -11.66246 -11.55050 -11.44524 -11.39688 -11.05751 -10.95326 -10.93957 -10.83113 -10.31859 -10.22794 -9.91737 -9.58978 -9.37395 -8.68400 -8.64978 -8.45425 -8.18368 -7.91280 -7.56323 -6.16174 -4.20444 2.40934 2.44392 2.80185 3.05075 3.30615 3.34373 3.36701 3.82111 4.13763 4.39359 4.40303 4.42761 4.72484 4.87795 4.98491 5.02215 5.19621 5.23139 5.36266 5.42771 5.53453 5.60715 5.61418 5.74548 5.74780 5.80431 5.82666 5.88330 5.92097 5.94426 6.17375 6.27709 6.41542 6.48251 6.56311 6.63575 6.66411 6.92868 7.02434 7.21111 7.25392 7.39958 7.41025 7.49539 7.72502 7.84926 8.01231 8.15616 8.35837 8.57829 8.81851 9.37215 9.45259 10.92776 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.004846 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.585333 B = 5776.758556 C = 6612.417570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.124 3.876 3 H 0.081 0.919 4 C 0.119 3.881 5 N -0.619 5.619 6 C 0.103 3.897 7 C -0.131 4.131 8 C -0.156 4.156 9 C 0.516 3.484 10 O -0.514 6.514 11 N -0.722 5.722 12 C 0.529 3.471 13 O -0.574 6.574 14 C 0.050 3.950 15 H 0.089 0.911 16 C -0.514 4.514 17 H 0.059 0.941 18 C 0.077 3.923 19 N -0.876 5.876 20 Si 0.897 3.103 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.009 4.009 25 C -0.084 4.084 26 C -0.134 4.134 27 C -0.150 4.150 28 C -0.132 4.132 29 C -0.121 4.121 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.413 0.587 42 H 0.266 0.734 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.174 6.273 12.652 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.099 0.901 4 C -0.004 4.004 5 N -0.354 5.354 6 C -0.020 4.020 7 C -0.168 4.168 8 C -0.196 4.196 9 C 0.304 3.696 10 O -0.389 6.389 11 N -0.376 5.376 12 C 0.319 3.681 13 O -0.454 6.454 14 C 0.029 3.971 15 H 0.106 0.894 16 C -0.552 4.552 17 H 0.078 0.922 18 C -0.128 4.128 19 N -0.512 5.512 20 Si 0.724 3.276 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.010 4.010 25 C -0.102 4.102 26 C -0.153 4.153 27 C -0.168 4.168 28 C -0.150 4.150 29 C -0.140 4.140 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.251 0.749 42 H 0.076 0.924 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.780 6.429 12.287 14.143 hybrid contribution -0.527 -1.130 -0.442 1.323 sum 2.252 5.299 11.845 13.170 Atomic orbital electron populations 1.22117 0.95325 1.02241 1.02176 1.21212 0.94043 0.97582 0.85483 0.90082 1.21753 0.78596 1.02346 0.97656 1.48179 1.05853 1.22045 1.59352 1.22049 0.89126 0.91720 0.99150 1.22611 0.96974 0.97851 0.99408 1.22365 0.94632 1.01047 1.01564 1.20876 0.89860 0.81885 0.77001 1.90789 1.74112 1.31158 1.42852 1.46122 1.67936 1.15117 1.08457 1.21594 0.75341 0.86248 0.84942 1.90550 1.52211 1.17005 1.85647 1.18087 1.00950 0.92036 0.85981 0.89358 1.20567 0.93220 0.97606 1.43783 0.92232 1.24922 0.95166 0.97985 0.94713 1.69865 1.11234 1.27194 1.42868 0.86572 0.80868 0.80886 0.79298 1.20019 1.21104 1.19987 1.20105 0.91948 0.92366 0.96587 1.20822 0.98406 0.95677 0.95293 1.20955 0.96926 0.99537 0.97849 1.20784 0.93048 1.02033 1.00952 1.20886 0.97276 0.98936 0.97883 1.20990 0.97685 0.97980 0.97306 0.92446 0.91553 0.92326 0.89530 0.89462 0.91132 0.90631 0.89309 0.90229 0.88269 0.87546 0.74914 0.92389 0.87169 0.87642 0.87756 0.87611 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 2 C 0.12 1.93 2.88 -67.94 -0.20 1.74 16 3 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 4 C 0.12 1.48 5.53 -4.04 -0.02 1.46 16 5 N -0.62 -7.93 2.80 -172.42 -0.48 -8.42 16 6 C 0.10 0.94 7.34 -3.12 -0.02 0.92 16 7 C -0.13 -1.02 7.20 -24.98 -0.18 -1.20 16 8 C -0.16 -1.78 6.87 -26.62 -0.18 -1.96 16 9 C 0.52 8.02 7.32 -10.86 -0.08 7.94 16 10 O -0.51 -10.41 15.82 5.55 0.09 -10.32 16 11 N -0.72 -14.52 4.42 -53.81 -0.24 -14.75 16 12 C 0.53 12.33 7.01 -10.99 -0.08 12.25 16 13 O -0.57 -14.17 15.08 5.56 0.08 -14.08 16 14 C 0.05 1.27 2.44 -94.08 -0.23 1.04 16 15 H 0.09 2.40 7.00 -51.93 -0.36 2.04 16 16 C -0.51 -13.72 7.46 -34.44 -0.26 -13.97 16 17 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 18 C 0.08 2.09 5.45 -17.82 -0.10 1.99 16 19 N -0.88 -24.46 12.78 55.43 0.71 -23.76 16 20 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 24 C -0.01 -0.22 4.30 -104.62 -0.45 -0.67 16 25 C -0.08 -1.95 8.31 -39.58 -0.33 -2.28 16 26 C -0.13 -2.74 10.05 -39.58 -0.40 -3.14 16 27 C -0.15 -2.87 10.05 -39.58 -0.40 -3.26 16 28 C -0.13 -2.61 10.05 -39.59 -0.40 -3.01 16 29 C -0.12 -2.74 9.67 -39.59 -0.38 -3.13 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.16 7.93 -51.93 -0.41 0.74 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.41 8.99 6.22 -40.82 -0.25 8.74 16 42 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.11 2.61 7.89 -52.48 -0.41 2.20 16 44 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 45 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 46 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 47 H 0.11 2.42 7.95 -52.49 -0.42 2.00 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -32.90 389.47 -9.64 -42.53 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: -7.30 Total: 13.83 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -3.35 Total: -7.22 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: -0.01 Total: -46.92 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.17 Total: -24.40 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.90 -9.64 -42.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417628566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.802 kcal (2) G-P(sol) polarization free energy of solvation -32.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds