Wall clock time and date at job start Tue Mar 31 2020 15:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46973 * 2 1 4 4 C 1.52995 * 109.47174 * 120.00023 * 2 1 3 5 5 N 1.46501 * 109.47426 * 174.99907 * 4 2 1 6 6 C 1.46769 * 124.34652 * 89.99836 * 5 4 2 7 7 C 1.54478 * 105.54583 * 162.92429 * 6 5 4 8 8 C 1.54855 * 101.66245 * 25.43288 * 7 6 5 9 9 C 1.34414 * 124.35196 * 269.98179 * 5 4 2 10 10 O 1.21286 * 124.93708 * 0.44193 * 9 5 4 11 11 N 1.46494 * 109.47245 * 240.00312 * 2 1 3 12 12 C 1.34777 * 120.00408 * 84.99615 * 11 2 1 13 13 O 1.21280 * 119.99710 * 0.02562 * 12 11 2 14 14 C 1.50700 * 120.00148 * 180.02562 * 12 11 2 15 15 H 1.08999 * 109.46836 * 299.99789 * 14 12 11 16 16 C 1.50697 * 109.47117 * 60.00348 * 14 12 11 17 17 H 1.08004 * 120.00090 * 33.93757 * 16 14 12 18 18 C 1.37878 * 120.00047 * 213.94304 * 16 14 12 19 19 N 1.31518 * 119.99678 * 6.38770 * 18 16 14 20 20 Si 1.86795 * 120.00089 * 186.38847 * 18 16 14 21 21 H 1.48505 * 109.47160 * 60.00011 * 20 18 16 22 22 H 1.48507 * 109.47176 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47111 * 299.99859 * 20 18 16 24 24 C 1.50699 * 109.46916 * 180.02562 * 14 12 11 25 25 C 1.38231 * 120.00042 * 293.84650 * 24 14 12 26 26 C 1.38243 * 120.00276 * 179.78770 * 25 24 14 27 27 C 1.38234 * 119.99332 * 0.44230 * 26 25 24 28 28 C 1.38237 * 120.00277 * 359.81476 * 27 26 25 29 29 C 1.38227 * 120.00054 * 359.97438 * 28 27 26 30 30 H 1.08999 * 109.47196 * 300.00219 * 1 2 3 31 31 H 1.08999 * 109.47080 * 59.99676 * 1 2 3 32 32 H 1.08993 * 109.47385 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47391 * 55.00185 * 4 2 1 34 34 H 1.08998 * 109.47280 * 295.00137 * 4 2 1 35 35 H 1.08996 * 110.24515 * 281.96596 * 6 5 4 36 36 H 1.08993 * 110.24705 * 43.87797 * 6 5 4 37 37 H 1.08998 * 110.97006 * 143.57827 * 7 6 5 38 38 H 1.09002 * 110.97049 * 267.34145 * 7 6 5 39 39 H 1.09001 * 110.47069 * 216.51729 * 8 7 6 40 40 H 1.08998 * 110.60247 * 93.93893 * 8 7 6 41 41 H 0.96999 * 119.99869 * 265.00441 * 11 2 1 42 42 H 0.97001 * 119.99907 * 180.02562 * 19 18 16 43 43 H 1.08003 * 120.00233 * 359.97438 * 25 24 14 44 44 H 1.07999 * 120.00325 * 180.27190 * 26 25 24 45 45 H 1.08005 * 119.99887 * 179.82764 * 27 26 25 46 46 H 1.08006 * 119.99779 * 179.97438 * 28 27 26 47 47 H 1.08000 * 120.00250 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1906 6 6 4.4249 0.1772 1.7305 7 6 5.7910 -0.5356 1.8409 8 6 5.6567 -1.6384 0.7621 9 6 4.1647 -1.8545 0.6357 10 8 3.6440 -2.8155 0.1099 11 7 2.0183 -0.6905 -1.1962 12 6 2.1470 -0.0182 -2.3571 13 8 1.8590 1.1587 -2.4115 14 6 2.6489 -0.7287 -3.5877 15 1 3.6480 -1.1212 -3.3986 16 6 1.7185 -1.8649 -3.9263 17 1 0.6593 -1.7702 -3.7374 18 6 2.2194 -3.0254 -4.4770 19 7 3.5191 -3.1915 -4.5910 20 14 1.0522 -4.3616 -5.0613 21 1 0.1652 -3.8159 -6.1199 22 1 1.8354 -5.4980 -5.6097 23 1 0.2282 -4.8330 -3.9194 24 6 2.7002 0.2398 -4.7411 25 6 1.5301 0.7724 -5.2491 26 6 1.5774 1.6642 -6.3043 27 6 2.7943 2.0164 -6.8574 28 6 3.9641 1.4798 -6.3528 29 6 3.9170 0.5914 -5.2949 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6054 -1.7198 1.2951 34 1 1.7516 -0.1583 2.1369 35 1 4.4968 1.0274 1.0523 36 1 4.0911 0.5073 2.7141 37 1 6.6072 0.1467 1.6035 38 1 5.9245 -0.9718 2.8308 39 1 6.1483 -2.5543 1.0900 40 1 6.0749 -1.3005 -0.1860 41 1 2.2490 -1.6317 -1.1526 42 1 3.8716 -4.0077 -4.9789 43 1 0.5790 0.4940 -4.8196 44 1 0.6635 2.0837 -6.6983 45 1 2.8312 2.7111 -7.6836 46 1 4.9149 1.7547 -6.7853 47 1 4.8310 0.1724 -4.9005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417628566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:41 Heat of formation + Delta-G solvation = -74.390682 kcal Electronic energy + Delta-G solvation = -29418.847216 eV Core-core repulsion = 25565.049622 eV Total energy + Delta-G solvation = -3853.797594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52653 -40.71935 -39.40436 -37.51502 -36.67706 -35.52695 -33.30234 -32.87596 -31.57065 -31.46235 -28.97985 -28.43015 -27.20832 -25.86374 -23.40629 -23.17616 -22.78936 -21.80455 -20.93801 -20.37367 -18.72978 -18.06303 -17.71576 -17.60597 -17.25283 -17.01192 -16.34243 -16.08735 -15.84232 -15.64725 -15.20189 -14.79721 -14.64213 -14.58204 -14.52224 -14.10121 -14.05620 -13.83094 -13.63761 -13.45533 -13.33007 -13.24035 -13.02612 -12.88196 -12.81532 -12.72799 -12.24935 -12.22519 -12.14149 -12.00478 -11.80753 -11.67894 -11.32523 -10.81346 -10.72121 -10.40479 -9.94002 -9.61373 -9.59220 -9.29033 -8.24507 -6.34303 0.71980 0.77584 1.36289 1.38354 1.45007 1.60662 1.94065 2.07120 2.39362 2.59667 3.05263 3.24377 3.48479 3.66209 3.78710 4.05270 4.11088 4.18692 4.22555 4.27654 4.30906 4.36322 4.41914 4.48674 4.58175 4.63139 4.69914 4.71540 4.78096 4.84260 4.87351 4.94305 5.02007 5.08347 5.08914 5.22610 5.25260 5.33858 5.41372 5.59375 5.59794 5.75009 5.77222 5.83250 5.93160 6.16876 6.21340 6.37336 6.68139 6.77242 7.22034 7.31462 7.55738 8.83876 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009904 B = 0.004846 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.585333 B = 5776.758556 C = 6612.417570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.117 3.883 3 H 0.075 0.925 4 C 0.122 3.878 5 N -0.617 5.617 6 C 0.095 3.905 7 C -0.114 4.114 8 C -0.158 4.158 9 C 0.498 3.502 10 O -0.576 6.576 11 N -0.716 5.716 12 C 0.527 3.473 13 O -0.592 6.592 14 C 0.053 3.947 15 H 0.056 0.944 16 C -0.518 4.518 17 H 0.048 0.952 18 C 0.032 3.968 19 N -0.903 5.903 20 Si 0.952 3.048 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.271 1.271 24 C -0.039 4.039 25 C -0.110 4.110 26 C -0.133 4.133 27 C -0.141 4.141 28 C -0.126 4.126 29 C -0.145 4.145 30 H 0.100 0.900 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.063 0.937 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.404 0.596 42 H 0.266 0.734 43 H 0.092 0.908 44 H 0.137 0.863 45 H 0.150 0.850 46 H 0.142 0.858 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.243 8.179 13.477 16.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.012 3.988 3 H 0.094 0.906 4 C 0.000 4.000 5 N -0.350 5.350 6 C -0.026 4.026 7 C -0.151 4.151 8 C -0.198 4.198 9 C 0.287 3.713 10 O -0.456 6.456 11 N -0.368 5.368 12 C 0.316 3.684 13 O -0.474 6.474 14 C 0.032 3.968 15 H 0.074 0.926 16 C -0.556 4.556 17 H 0.066 0.934 18 C -0.170 4.170 19 N -0.540 5.540 20 Si 0.777 3.223 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.196 1.196 24 C -0.040 4.040 25 C -0.128 4.128 26 C -0.151 4.151 27 C -0.159 4.159 28 C -0.144 4.144 29 C -0.164 4.164 30 H 0.119 0.881 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.081 0.919 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.112 0.888 41 H 0.241 0.759 42 H 0.075 0.925 43 H 0.110 0.890 44 H 0.155 0.845 45 H 0.168 0.832 46 H 0.160 0.840 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.849 8.379 13.166 15.864 hybrid contribution -0.537 -1.613 -0.680 1.831 sum 2.312 6.766 12.486 14.389 Atomic orbital electron populations 1.22053 0.94126 1.02236 1.02716 1.21564 0.95063 0.97182 0.84993 0.90638 1.21826 0.78554 1.02080 0.97578 1.48380 1.06477 1.21978 1.58178 1.22372 0.89163 0.90549 1.00537 1.22656 0.96878 0.96532 0.99073 1.22414 0.91701 1.03099 1.02589 1.21674 0.91802 0.81638 0.76197 1.90740 1.75554 1.33727 1.45575 1.46175 1.66908 1.14600 1.09159 1.21287 0.75547 0.86011 0.85514 1.90509 1.53355 1.17451 1.86065 1.17943 0.98821 0.92318 0.87734 0.92591 1.20651 0.92789 0.98493 1.43641 0.93391 1.25609 0.96501 0.99903 0.94947 1.69980 1.12530 1.27672 1.43807 0.85708 0.79143 0.78611 0.78883 1.19657 1.20424 1.19570 1.20125 0.93321 0.93575 0.96940 1.20817 0.97199 0.97636 0.97143 1.21336 0.99142 0.98139 0.96471 1.21290 0.91849 1.01547 1.01225 1.21297 0.99509 0.97225 0.96354 1.21119 0.96800 0.99556 0.98902 0.88099 0.94703 0.92592 0.90646 0.84493 0.91863 0.86935 0.87152 0.87846 0.87404 0.88757 0.75919 0.92488 0.88996 0.84498 0.83209 0.84005 0.87891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.34 9.48 71.98 0.68 -3.66 16 2 C 0.12 3.69 2.88 44.99 0.13 3.82 16 3 H 0.08 2.48 7.58 -2.38 -0.02 2.46 16 4 C 0.12 2.89 5.53 86.38 0.48 3.37 16 5 N -0.62 -15.36 2.80 -818.01 -2.29 -17.65 16 6 C 0.10 1.51 7.34 86.83 0.64 2.15 16 7 C -0.11 -1.48 7.20 31.73 0.23 -1.25 16 8 C -0.16 -3.62 6.87 30.67 0.21 -3.41 16 9 C 0.50 16.01 7.32 87.90 0.64 16.65 16 10 O -0.58 -24.96 15.82 -3.05 -0.05 -25.01 16 11 N -0.72 -30.46 4.42 -442.55 -1.96 -32.41 16 12 C 0.53 26.09 7.01 87.66 0.61 26.71 16 13 O -0.59 -30.54 15.08 -3.03 -0.05 -30.59 16 14 C 0.05 2.85 2.44 -13.03 -0.03 2.82 16 15 H 0.06 3.31 7.00 -2.39 -0.02 3.30 16 16 C -0.52 -29.25 7.46 25.60 0.19 -29.06 16 17 H 0.05 2.74 7.82 -2.91 -0.02 2.72 16 18 C 0.03 1.83 5.45 84.65 0.46 2.29 16 19 N -0.90 -52.91 12.78 21.45 0.27 -52.64 16 20 Si 0.95 45.13 29.54 68.60 2.03 47.15 16 21 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 24 C -0.04 -1.97 4.30 -19.87 -0.09 -2.05 16 25 C -0.11 -5.25 8.31 22.27 0.19 -5.06 16 26 C -0.13 -5.21 10.05 22.27 0.22 -4.99 16 27 C -0.14 -4.96 10.05 22.27 0.22 -4.74 16 28 C -0.13 -4.77 10.05 22.27 0.22 -4.55 16 29 C -0.15 -6.74 9.67 22.27 0.22 -6.53 16 30 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.08 2.00 7.93 -2.39 -0.02 1.98 16 34 H 0.14 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 41 H 0.40 18.91 6.22 -92.71 -0.58 18.33 16 42 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 43 H 0.09 4.59 7.89 -2.91 -0.02 4.57 16 44 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 45 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 46 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 47 H 0.10 4.76 7.95 -2.91 -0.02 4.74 16 Total: -1.00 -78.19 389.47 3.58 -74.61 By element: Atomic # 1 Polarization: 43.63 SS G_CDS: 0.39 Total: 44.02 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.23 Total: -7.48 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -3.97 Total: -102.70 kcal Atomic # 8 Polarization: -55.50 SS G_CDS: -0.09 Total: -55.60 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -78.19 3.58 -74.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417628566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.220 kcal (2) G-P(sol) polarization free energy of solvation -78.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds