Wall clock time and date at job start Tue Mar 31 2020 15:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46676 * 2 1 4 4 C 1.53001 * 109.47381 * 119.99719 * 2 1 3 5 5 H 1.08995 * 109.46834 * 59.99837 * 4 2 1 6 6 O 1.42904 * 109.46982 * 300.00216 * 4 2 1 7 7 C 1.35710 * 116.99850 * 94.38366 * 6 4 2 8 8 C 1.38641 * 120.14612 * 1.82985 * 7 6 4 9 9 C 1.38110 * 120.08832 * 179.70338 * 8 7 6 10 10 C 1.38514 * 120.39127 * 0.59730 * 9 8 7 11 11 C 1.37824 * 120.29516 * 359.68439 * 10 9 8 12 12 C 1.39719 * 119.90355 * 0.02562 * 11 10 9 13 13 C 1.43194 * 120.19542 * 179.97438 * 12 11 10 14 14 N 5.57218 * 84.76676 * 66.82188 * 2 1 3 15 15 C 1.50693 * 109.46975 * 180.02562 * 4 2 1 16 16 O 1.21286 * 119.99984 * 120.00423 * 15 4 2 17 17 N 1.34779 * 120.00241 * 299.99788 * 15 4 2 18 18 C 1.46500 * 119.99804 * 0.02562 * 17 15 4 19 19 C 1.46504 * 119.99852 * 180.02562 * 17 15 4 20 20 H 1.08990 * 109.47400 * 359.97438 * 19 17 15 21 21 C 1.52999 * 109.46970 * 120.00705 * 19 17 15 22 22 C 1.50706 * 109.46700 * 239.99746 * 19 17 15 23 23 H 1.08002 * 120.00175 * 0.02562 * 22 19 17 24 24 C 1.37878 * 119.99745 * 179.97438 * 22 19 17 25 25 N 1.31517 * 120.00151 * 0.02562 * 24 22 19 26 26 Si 1.86797 * 119.99934 * 180.02562 * 24 22 19 27 27 H 1.48498 * 109.47346 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47283 * 120.00228 * 26 24 22 29 29 H 1.48506 * 109.47060 * 240.00324 * 26 24 22 30 30 H 1.08999 * 109.46904 * 300.00088 * 1 2 3 31 31 H 1.08999 * 109.47214 * 60.00134 * 1 2 3 32 32 H 1.09001 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47389 * 240.00127 * 2 1 3 34 34 H 1.08999 * 109.47525 * 60.00293 * 3 2 1 35 35 H 1.09007 * 109.46692 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47190 * 299.99881 * 3 2 1 37 37 H 1.08001 * 119.95895 * 0.02562 * 8 7 6 38 38 H 1.07999 * 119.80679 * 180.30529 * 9 8 7 39 39 H 1.07998 * 119.85568 * 179.69886 * 10 9 8 40 40 H 1.08007 * 120.04959 * 180.02562 * 11 10 9 41 41 H 1.08997 * 109.47089 * 89.99837 * 18 17 15 42 42 H 1.08993 * 109.46723 * 209.99687 * 18 17 15 43 43 H 1.09001 * 109.47016 * 329.99591 * 18 17 15 44 44 H 1.09008 * 109.46703 * 299.99277 * 21 19 17 45 45 H 1.08996 * 109.47661 * 59.98973 * 21 19 17 46 46 H 1.08995 * 109.47347 * 180.02562 * 21 19 17 47 47 H 0.96999 * 119.99937 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6768 -1.7488 1.2493 6 8 1.5637 -0.0475 2.4160 7 6 0.4175 -0.5148 2.9725 8 6 -0.2174 -1.6225 2.4323 9 6 -1.3805 -2.1008 3.0032 10 6 -1.9279 -1.4725 4.1096 11 6 -1.3131 -0.3666 4.6561 12 6 -0.1328 0.1240 4.0921 13 6 0.5109 1.2729 4.6546 14 7 1.0218 2.1840 5.1011 15 6 3.5470 -0.7206 1.2495 16 8 4.1531 -0.1953 2.1593 17 7 4.2214 -1.3038 0.2387 18 6 3.4893 -1.9379 -0.8605 19 6 5.6864 -1.3037 0.2393 20 1 6.0493 -0.7897 1.1293 21 6 6.1965 -2.7461 0.2389 22 6 6.1891 -0.5929 -0.9908 23 1 5.4874 -0.1820 -1.7017 24 6 7.5447 -0.4663 -1.2082 25 7 8.3991 -0.9662 -0.3423 26 14 8.1678 0.4154 -2.7326 27 1 7.0131 0.8826 -3.5410 28 1 8.9921 1.5822 -2.3274 29 1 8.9936 -0.5173 -3.5411 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 0.2007 -2.1153 1.5670 38 1 -1.8687 -2.9670 2.5816 39 1 -2.8404 -1.8509 4.5462 40 1 -1.7432 0.1200 5.5192 41 1 3.3078 -1.2051 -1.6466 42 1 4.0786 -2.7625 -1.2614 43 1 2.5368 -2.3180 -0.4911 44 1 5.8329 -3.2603 1.1287 45 1 5.8335 -3.2598 -0.6512 46 1 7.2864 -2.7461 0.2398 47 1 9.3528 -0.8774 -0.4955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772138277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:11 Heat of formation + Delta-G solvation = -6.006477 kcal Electronic energy + Delta-G solvation = -29275.198519 eV Core-core repulsion = 25424.366287 eV Total energy + Delta-G solvation = -3850.832232 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.11985 -39.33823 -37.64916 -36.28848 -35.52699 -34.92179 -32.79702 -31.63202 -30.52499 -29.71308 -27.36561 -27.15040 -26.29915 -25.25020 -24.08413 -22.90513 -21.54697 -20.28043 -19.57622 -18.75204 -17.52409 -16.82226 -16.40152 -16.21435 -15.96075 -15.35179 -15.18311 -14.82552 -14.59172 -14.34569 -14.13814 -13.67925 -13.32483 -13.16704 -13.05792 -12.89027 -12.72862 -12.69803 -12.45602 -12.28406 -12.18763 -11.93180 -11.86960 -11.79529 -11.61253 -11.41648 -11.11861 -11.04720 -10.90802 -10.77448 -10.56806 -10.51198 -10.28493 -10.19749 -9.29425 -9.23396 -9.01238 -8.48055 -8.39600 -7.70919 -6.11345 -4.19615 0.58453 1.08207 2.69824 2.77672 2.88763 3.17241 3.23542 3.32243 3.34471 3.71247 3.86018 3.91044 4.35607 4.42789 4.54560 4.61001 4.67537 4.80049 4.87307 5.00591 5.10388 5.19548 5.20641 5.25937 5.46446 5.49876 5.50720 5.67142 5.77828 5.87425 5.89802 5.93952 5.94728 6.04038 6.10517 6.13961 6.27344 6.36184 6.51849 6.69143 6.73897 6.96847 7.07913 7.34179 7.44145 7.60789 7.65873 7.95542 8.12478 8.39393 8.76301 8.92614 9.47063 10.94089 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.003296 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.563169 B = 8492.359861 C = 8698.034558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.146 4.146 4 C 0.066 3.934 5 H 0.100 0.900 6 O -0.269 6.269 7 C 0.188 3.812 8 C -0.217 4.217 9 C -0.047 4.047 10 C -0.166 4.166 11 C -0.032 4.032 12 C -0.066 4.066 13 C 0.260 3.740 14 N -0.414 5.414 15 C 0.508 3.492 16 O -0.526 6.526 17 N -0.586 5.586 18 C 0.080 3.920 19 C 0.259 3.741 20 H 0.064 0.936 21 C -0.148 4.148 22 C -0.525 4.525 23 H 0.060 0.940 24 C 0.065 3.935 25 N -0.887 5.887 26 Si 0.898 3.102 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.056 0.944 42 H 0.077 0.923 43 H 0.050 0.950 44 H 0.012 0.988 45 H 0.031 0.969 46 H 0.095 0.905 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.822 -5.852 1.398 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.140 4.140 3 C -0.203 4.203 4 C 0.007 3.993 5 H 0.117 0.883 6 O -0.179 6.179 7 C 0.138 3.862 8 C -0.235 4.235 9 C -0.066 4.066 10 C -0.184 4.184 11 C -0.053 4.053 12 C -0.070 4.070 13 C -0.055 4.055 14 N -0.090 5.090 15 C 0.292 3.708 16 O -0.403 6.403 17 N -0.319 5.319 18 C -0.064 4.064 19 C 0.160 3.840 20 H 0.082 0.918 21 C -0.206 4.206 22 C -0.564 4.564 23 H 0.079 0.921 24 C -0.138 4.138 25 N -0.525 5.525 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.155 0.845 41 H 0.074 0.926 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.031 0.969 45 H 0.050 0.950 46 H 0.113 0.887 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.324 -4.005 2.653 21.858 hybrid contribution 0.211 -0.148 -1.282 1.308 sum -21.113 -4.152 1.371 21.561 Atomic orbital electron populations 1.22033 0.94337 1.01872 1.02598 1.21873 0.96562 0.98721 0.96847 1.21764 1.02376 0.94434 1.01759 1.22655 0.94617 0.97407 0.84664 0.88287 1.86253 1.35951 1.54174 1.41536 1.19082 0.85542 0.91179 0.90438 1.21324 0.99253 0.98710 1.04257 1.21152 0.93636 0.97884 0.93939 1.20947 1.01833 0.97365 0.98293 1.21011 0.91467 0.94875 0.97915 1.15299 0.98191 0.95312 0.98236 1.25297 0.93604 0.92899 0.93736 1.81215 1.07553 1.11257 1.08946 1.19799 0.87459 0.80090 0.83421 1.90724 1.69225 1.44476 1.35841 1.48151 1.09347 1.54136 1.20292 1.21771 0.95491 0.98432 0.90664 1.18996 0.71672 0.94095 0.99242 0.91806 1.22106 1.04873 0.96825 0.96792 1.21318 0.91805 1.36433 1.06828 0.92130 1.24893 0.96679 0.95423 0.96775 1.69885 1.02308 1.45002 1.35286 0.86439 0.78865 0.79446 0.82638 1.19787 1.20908 1.20927 0.92323 0.91861 0.92268 0.87698 0.92253 0.91521 0.92425 0.84047 0.85005 0.84925 0.84472 0.92572 0.90392 0.93116 0.96935 0.94984 0.88658 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 7.73 37.16 0.29 -1.14 16 2 C -0.12 -1.52 2.45 -90.61 -0.22 -1.74 16 3 C -0.15 -2.19 8.80 37.16 0.33 -1.86 16 4 C 0.07 0.97 1.49 -27.89 -0.04 0.93 16 5 H 0.10 1.15 4.64 -51.93 -0.24 0.91 16 6 O -0.27 -4.31 7.86 -38.75 -0.30 -4.61 16 7 C 0.19 2.33 5.20 -38.71 -0.20 2.12 16 8 C -0.22 -1.94 7.15 -39.48 -0.28 -2.23 16 9 C -0.05 -0.31 10.03 -39.53 -0.40 -0.71 16 10 C -0.17 -1.05 10.02 -39.63 -0.40 -1.45 16 11 C -0.03 -0.26 9.76 -39.18 -0.38 -0.64 16 12 C -0.07 -0.79 5.75 -106.70 -0.61 -1.40 16 13 C 0.26 3.93 14.87 -22.47 -0.33 3.59 16 14 N -0.41 -7.30 18.54 41.84 0.78 -6.52 16 15 C 0.51 10.32 5.89 -10.99 -0.06 10.26 16 16 O -0.53 -13.43 15.83 -14.37 -0.23 -13.66 16 17 N -0.59 -11.79 2.75 -175.27 -0.48 -12.28 16 18 C 0.08 1.19 8.04 59.85 0.48 1.67 16 19 C 0.26 6.44 2.64 -69.08 -0.18 6.25 16 20 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 21 C -0.15 -3.40 8.95 37.16 0.33 -3.07 16 22 C -0.53 -13.78 8.37 -34.44 -0.29 -14.06 16 23 H 0.06 1.56 7.65 -52.49 -0.40 1.15 16 24 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 25 N -0.89 -24.81 11.32 55.43 0.63 -24.18 16 26 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.06 0.61 6.39 -51.93 -0.33 0.28 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.43 6.55 -51.93 -0.34 0.09 16 33 H 0.11 1.22 4.53 -51.93 -0.24 0.98 16 34 H 0.06 0.94 7.68 -51.93 -0.40 0.54 16 35 H 0.07 1.23 7.22 -51.93 -0.37 0.86 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.14 1.08 4.67 -52.49 -0.24 0.84 16 38 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 39 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 41 H 0.06 0.80 6.95 -51.93 -0.36 0.44 16 42 H 0.08 1.18 6.43 -51.93 -0.33 0.84 16 43 H 0.05 0.55 6.01 -51.93 -0.31 0.24 16 44 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 45 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 46 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 47 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -33.81 374.86 -7.32 -41.14 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.27 Total: 0.52 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -2.07 Total: -1.81 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 0.92 Total: -42.98 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.53 Total: -18.27 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.81 -7.32 -41.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772138277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.130 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds