Wall clock time and date at job start Tue Mar 31 2020 15:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.46676 * 2 1 4 4 C 1.53001 * 109.47381 * 119.99719 * 2 1 3 5 5 H 1.08995 * 109.46834 * 59.99837 * 4 2 1 6 6 O 1.42904 * 109.46982 * 300.00216 * 4 2 1 7 7 C 1.35710 * 116.99850 * 94.38366 * 6 4 2 8 8 C 1.38641 * 120.14612 * 1.82985 * 7 6 4 9 9 C 1.38110 * 120.08832 * 179.70338 * 8 7 6 10 10 C 1.38514 * 120.39127 * 0.59730 * 9 8 7 11 11 C 1.37824 * 120.29516 * 359.68439 * 10 9 8 12 12 C 1.39719 * 119.90355 * 0.02562 * 11 10 9 13 13 C 1.43194 * 120.19542 * 179.97438 * 12 11 10 14 14 N 5.57218 * 84.76676 * 66.82188 * 2 1 3 15 15 C 1.50693 * 109.46975 * 180.02562 * 4 2 1 16 16 O 1.21286 * 119.99984 * 120.00423 * 15 4 2 17 17 N 1.34779 * 120.00241 * 299.99788 * 15 4 2 18 18 C 1.46500 * 119.99804 * 0.02562 * 17 15 4 19 19 C 1.46504 * 119.99852 * 180.02562 * 17 15 4 20 20 H 1.08990 * 109.47400 * 359.97438 * 19 17 15 21 21 C 1.52999 * 109.46970 * 120.00705 * 19 17 15 22 22 C 1.50706 * 109.46700 * 239.99746 * 19 17 15 23 23 H 1.08002 * 120.00175 * 0.02562 * 22 19 17 24 24 C 1.37878 * 119.99745 * 179.97438 * 22 19 17 25 25 N 1.31517 * 120.00151 * 0.02562 * 24 22 19 26 26 Si 1.86797 * 119.99934 * 180.02562 * 24 22 19 27 27 H 1.48498 * 109.47346 * 0.02562 * 26 24 22 28 28 H 1.48497 * 109.47283 * 120.00228 * 26 24 22 29 29 H 1.48506 * 109.47060 * 240.00324 * 26 24 22 30 30 H 1.08999 * 109.46904 * 300.00088 * 1 2 3 31 31 H 1.08999 * 109.47214 * 60.00134 * 1 2 3 32 32 H 1.09001 * 109.46955 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47389 * 240.00127 * 2 1 3 34 34 H 1.08999 * 109.47525 * 60.00293 * 3 2 1 35 35 H 1.09007 * 109.46692 * 180.02562 * 3 2 1 36 36 H 1.08999 * 109.47190 * 299.99881 * 3 2 1 37 37 H 1.08001 * 119.95895 * 0.02562 * 8 7 6 38 38 H 1.07999 * 119.80679 * 180.30529 * 9 8 7 39 39 H 1.07998 * 119.85568 * 179.69886 * 10 9 8 40 40 H 1.08007 * 120.04959 * 180.02562 * 11 10 9 41 41 H 1.08997 * 109.47089 * 89.99837 * 18 17 15 42 42 H 1.08993 * 109.46723 * 209.99687 * 18 17 15 43 43 H 1.09001 * 109.47016 * 329.99591 * 18 17 15 44 44 H 1.09008 * 109.46703 * 299.99277 * 21 19 17 45 45 H 1.08996 * 109.47661 * 59.98973 * 21 19 17 46 46 H 1.08995 * 109.47347 * 180.02562 * 21 19 17 47 47 H 0.96999 * 119.99937 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6768 -1.7488 1.2493 6 8 1.5637 -0.0475 2.4160 7 6 0.4175 -0.5148 2.9725 8 6 -0.2174 -1.6225 2.4323 9 6 -1.3805 -2.1008 3.0032 10 6 -1.9279 -1.4725 4.1096 11 6 -1.3131 -0.3666 4.6561 12 6 -0.1328 0.1240 4.0921 13 6 0.5109 1.2729 4.6546 14 7 1.0218 2.1840 5.1011 15 6 3.5470 -0.7206 1.2495 16 8 4.1531 -0.1953 2.1593 17 7 4.2214 -1.3038 0.2387 18 6 3.4893 -1.9379 -0.8605 19 6 5.6864 -1.3037 0.2393 20 1 6.0493 -0.7897 1.1293 21 6 6.1965 -2.7461 0.2389 22 6 6.1891 -0.5929 -0.9908 23 1 5.4874 -0.1820 -1.7017 24 6 7.5447 -0.4663 -1.2082 25 7 8.3991 -0.9662 -0.3423 26 14 8.1678 0.4154 -2.7326 27 1 7.0131 0.8826 -3.5410 28 1 8.9921 1.5822 -2.3274 29 1 8.9936 -0.5173 -3.5411 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 0.2007 -2.1153 1.5670 38 1 -1.8687 -2.9670 2.5816 39 1 -2.8404 -1.8509 4.5462 40 1 -1.7432 0.1200 5.5192 41 1 3.3078 -1.2051 -1.6466 42 1 4.0786 -2.7625 -1.2614 43 1 2.5368 -2.3180 -0.4911 44 1 5.8329 -3.2603 1.1287 45 1 5.8335 -3.2598 -0.6512 46 1 7.2864 -2.7461 0.2398 47 1 9.3528 -0.8774 -0.4955 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772138277.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:10 Heat of formation + Delta-G solvation = -26.736946 kcal Electronic energy + Delta-G solvation = -29276.097460 eV Core-core repulsion = 25424.366287 eV Total energy + Delta-G solvation = -3851.731173 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.16070 -40.58209 -38.71904 -37.42360 -37.20771 -36.12340 -34.62908 -32.36101 -31.64650 -31.11413 -28.57858 -28.14936 -27.64970 -27.28159 -24.83195 -23.84593 -23.04456 -21.38183 -20.49040 -20.21504 -18.57556 -18.46698 -17.78349 -17.38221 -17.27472 -16.75179 -16.25188 -16.02080 -15.76032 -15.48115 -15.14591 -15.00913 -14.59366 -14.49363 -14.17986 -14.11728 -14.05394 -13.83099 -13.78297 -13.50355 -13.27165 -13.09534 -13.04197 -12.98884 -12.81624 -12.73453 -12.65133 -12.51803 -12.22322 -12.19480 -12.14316 -12.12156 -11.55216 -11.46573 -11.16721 -10.65494 -10.48179 -9.96730 -9.39174 -9.19864 -8.16368 -6.32709 -0.13825 0.43243 1.38477 1.40808 1.50569 1.56795 1.64339 1.72885 1.97883 2.37245 2.59900 2.90317 2.96178 3.12193 3.40470 3.48754 3.65517 3.91689 3.97393 4.10502 4.22956 4.36477 4.39580 4.48960 4.50887 4.56654 4.67602 4.73511 4.76819 4.86382 4.87784 4.90178 4.99733 5.02433 5.03512 5.13649 5.24220 5.28575 5.39186 5.42172 5.44598 5.53671 5.57732 5.64621 5.79202 6.01259 6.13850 6.23866 6.50585 6.73583 6.75931 7.26474 7.42618 8.88298 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.003296 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.563169 B = 8492.359861 C = 8698.034558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.080 3.920 5 H 0.140 0.860 6 O -0.310 6.310 7 C 0.160 3.840 8 C -0.217 4.217 9 C -0.029 4.029 10 C -0.151 4.151 11 C -0.027 4.027 12 C -0.099 4.099 13 C 0.277 3.723 14 N -0.483 5.483 15 C 0.495 3.505 16 O -0.598 6.598 17 N -0.589 5.589 18 C 0.070 3.930 19 C 0.262 3.738 20 H 0.000 1.000 21 C -0.132 4.132 22 C -0.533 4.533 23 H 0.064 0.936 24 C 0.013 3.987 25 N -0.919 5.919 26 Si 0.964 3.036 27 H -0.262 1.262 28 H -0.291 1.291 29 H -0.272 1.272 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.122 0.878 34 H 0.039 0.961 35 H 0.018 0.982 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.171 0.829 40 H 0.155 0.845 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.102 0.898 44 H 0.020 0.980 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.543 -8.858 -0.977 28.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.200 4.200 4 C 0.021 3.979 5 H 0.157 0.843 6 O -0.222 6.222 7 C 0.111 3.889 8 C -0.235 4.235 9 C -0.047 4.047 10 C -0.169 4.169 11 C -0.047 4.047 12 C -0.103 4.103 13 C -0.036 4.036 14 N -0.160 5.160 15 C 0.283 3.717 16 O -0.479 6.479 17 N -0.320 5.320 18 C -0.071 4.071 19 C 0.161 3.839 20 H 0.018 0.982 21 C -0.191 4.191 22 C -0.571 4.571 23 H 0.082 0.918 24 C -0.186 4.186 25 N -0.558 5.558 26 Si 0.789 3.211 27 H -0.186 1.186 28 H -0.217 1.217 29 H -0.197 1.197 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.139 0.861 34 H 0.058 0.942 35 H 0.037 0.963 36 H 0.099 0.901 37 H 0.177 0.823 38 H 0.192 0.808 39 H 0.189 0.811 40 H 0.173 0.827 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.120 0.880 44 H 0.039 0.961 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -26.102 -7.042 0.243 27.036 hybrid contribution 1.567 0.735 -0.459 1.791 sum -24.535 -6.307 -0.217 25.333 Atomic orbital electron populations 1.22002 0.91026 1.04173 1.02755 1.21934 0.99108 0.96227 0.96087 1.21721 0.99192 0.97206 1.01905 1.22561 0.89793 0.99902 0.85667 0.84331 1.86206 1.38176 1.55460 1.42326 1.19400 0.85240 0.93062 0.91177 1.21548 0.99859 0.97326 1.04764 1.21680 0.92039 0.98075 0.92902 1.21444 1.02299 0.95618 0.97496 1.21321 0.89874 0.95398 0.98157 1.15685 1.00060 0.95143 0.99423 1.26108 0.92333 0.92878 0.92307 1.81195 1.09732 1.13630 1.11454 1.20942 0.90290 0.78402 0.82079 1.90680 1.71344 1.47331 1.38547 1.48092 1.07866 1.54262 1.21824 1.22157 0.97126 0.98423 0.89422 1.18549 0.75058 0.94308 0.96024 0.98164 1.21876 1.02932 0.95982 0.98290 1.21588 0.92124 1.36390 1.07045 0.91759 1.25746 0.97021 0.96177 0.99682 1.70039 1.02483 1.46207 1.37077 0.85424 0.78433 0.78013 0.79252 1.18562 1.21745 1.19740 0.93519 0.90395 0.88826 0.86083 0.94208 0.96264 0.90116 0.82282 0.80807 0.81130 0.82736 0.91597 0.90278 0.88013 0.96089 0.92520 0.91543 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 7.73 71.98 0.56 -1.53 16 2 C -0.12 -2.63 2.45 -10.79 -0.03 -2.65 16 3 C -0.14 -4.40 8.80 71.98 0.63 -3.76 16 4 C 0.08 2.26 1.49 29.85 0.04 2.31 16 5 H 0.14 2.69 4.64 -2.39 -0.01 2.68 16 6 O -0.31 -10.14 7.86 -71.26 -0.56 -10.70 16 7 C 0.16 3.74 5.20 22.83 0.12 3.86 16 8 C -0.22 -2.89 7.15 22.34 0.16 -2.73 16 9 C -0.03 -0.19 10.03 22.31 0.22 0.03 16 10 C -0.15 -1.05 10.02 22.24 0.22 -0.83 16 11 C -0.03 -0.36 9.76 22.53 0.22 -0.14 16 12 C -0.10 -2.29 5.75 -21.21 -0.12 -2.42 16 13 C 0.28 8.95 14.87 88.33 1.31 10.26 16 14 N -0.48 -18.60 18.54 19.00 0.35 -18.25 16 15 C 0.50 20.96 5.89 87.65 0.52 21.47 16 16 O -0.60 -33.31 15.83 16.00 0.25 -33.06 16 17 N -0.59 -24.03 2.75 -826.80 -2.28 -26.31 16 18 C 0.07 1.90 8.04 127.77 1.03 2.93 16 19 C 0.26 13.65 2.64 44.25 0.12 13.77 16 20 H 0.00 0.02 6.90 -2.39 -0.02 0.01 16 21 C -0.13 -6.25 8.95 71.98 0.64 -5.61 16 22 C -0.53 -28.75 8.37 25.60 0.21 -28.54 16 23 H 0.06 3.33 7.65 -2.91 -0.02 3.31 16 24 C 0.01 0.72 5.30 84.65 0.45 1.17 16 25 N -0.92 -53.60 11.32 21.45 0.24 -53.36 16 26 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 27 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 30 H 0.05 0.83 6.39 -2.39 -0.02 0.82 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.74 6.55 -2.39 -0.02 0.73 16 33 H 0.12 2.36 4.53 -2.39 -0.01 2.34 16 34 H 0.04 1.34 7.68 -2.39 -0.02 1.32 16 35 H 0.02 0.74 7.22 -2.38 -0.02 0.72 16 36 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.16 1.45 4.67 -2.91 -0.01 1.43 16 38 H 0.17 -0.16 8.06 -2.91 -0.02 -0.18 16 39 H 0.17 0.02 8.06 -2.91 -0.02 -0.01 16 40 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.07 1.68 6.95 -2.39 -0.02 1.66 16 42 H 0.08 2.15 6.43 -2.39 -0.02 2.13 16 43 H 0.10 1.70 6.01 -2.39 -0.01 1.69 16 44 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 45 H 0.06 2.34 6.66 -2.39 -0.02 2.32 16 46 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 47 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -86.67 374.86 7.36 -79.31 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: 1.00 Total: 9.48 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 6.31 Total: 7.60 kcal Atomic # 7 Polarization: -96.23 SS G_CDS: -1.68 Total: -97.91 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -0.31 Total: -43.76 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -86.67 7.36 -79.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772138277.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.575 kcal (2) G-P(sol) polarization free energy of solvation -86.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds