Wall clock time and date at job start Tue Mar 31 2020 15:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35896 * 116.99669 * 2 1 4 4 C 1.38755 * 120.05921 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94282 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05816 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11164 * 0.30048 * 6 5 4 8 8 C 1.50694 * 119.97341 * 179.72771 * 7 6 5 9 9 N 1.46503 * 115.54802 * 306.01037 * 8 7 6 10 10 C 1.34778 * 120.00054 * 296.25535 * 9 8 7 11 11 O 1.21593 * 119.99774 * 5.16448 * 10 9 8 12 12 N 1.34775 * 120.00198 * 185.17518 * 10 9 8 13 13 C 1.46505 * 120.00307 * 175.09582 * 12 10 9 14 14 C 1.52995 * 109.47292 * 185.05301 * 13 12 10 15 15 C 1.50701 * 115.54915 * 64.88200 * 14 13 12 16 16 H 1.07997 * 120.00622 * 265.70545 * 15 14 13 17 17 C 1.37883 * 119.99783 * 85.70829 * 15 14 13 18 18 N 1.31519 * 119.99854 * 177.92728 * 17 15 14 19 19 Si 1.86794 * 119.99869 * 357.91820 * 17 15 14 20 20 H 1.48509 * 109.46839 * 90.91186 * 19 17 15 21 21 H 1.48498 * 109.47400 * 210.90916 * 19 17 15 22 22 H 1.48503 * 109.47628 * 330.91501 * 19 17 15 23 23 C 1.52995 * 117.50191 * 279.21813 * 14 13 12 24 24 C 1.52995 * 117.50227 * 210.55586 * 14 13 12 25 25 C 1.53002 * 117.50054 * 160.30471 * 8 7 6 26 26 C 1.52998 * 60.00021 * 252.50614 * 25 8 7 27 27 C 1.38170 * 120.05348 * 359.44553 * 7 6 5 28 28 H 1.08997 * 109.47211 * 300.00676 * 1 2 3 29 29 H 1.09004 * 109.46584 * 60.00391 * 1 2 3 30 30 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.02674 * 359.95639 * 4 3 2 32 32 H 1.08001 * 119.97260 * 180.02562 * 5 4 3 33 33 H 1.07993 * 119.94338 * 180.02562 * 6 5 4 34 34 H 0.97002 * 120.00094 * 116.25431 * 9 8 7 35 35 H 0.97004 * 119.99840 * 355.08858 * 12 10 9 36 36 H 1.09000 * 109.46483 * 305.05346 * 13 12 10 37 37 H 1.09000 * 109.47204 * 65.05349 * 13 12 10 38 38 H 0.97001 * 119.99727 * 179.97438 * 18 17 15 39 39 H 1.09010 * 117.49718 * 359.97438 * 23 14 13 40 40 H 1.09000 * 117.50381 * 145.01636 * 23 14 13 41 41 H 1.09001 * 117.50336 * 214.98308 * 24 14 13 42 42 H 1.09006 * 117.49646 * 359.97263 * 24 14 13 43 43 H 1.08992 * 117.49598 * 0.02562 * 25 8 7 44 44 H 1.09002 * 117.50024 * 145.01772 * 25 8 7 45 45 H 1.08996 * 117.49807 * 252.51130 * 26 25 8 46 46 H 1.08995 * 117.51519 * 107.47801 * 26 25 8 47 47 H 1.08001 * 120.03004 * 180.25587 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6758 0.0016 7 6 4.0560 2.5172 -0.0036 8 6 5.5608 2.5982 -0.0080 9 7 6.1466 3.4109 -1.0770 10 6 5.9869 3.0468 -2.3648 11 8 5.2793 2.0985 -2.6453 12 7 6.6117 3.7336 -3.3418 13 6 6.5255 3.2745 -4.7303 14 6 7.4176 4.1494 -5.6131 15 6 8.8955 4.0638 -5.3310 16 1 9.3608 4.7771 -4.6669 17 6 9.6537 3.0746 -5.9207 18 7 10.9504 3.0244 -5.7068 19 14 8.8391 1.8057 -7.0233 20 1 8.8578 2.2860 -8.4284 21 1 9.5780 0.5210 -6.9294 22 1 7.4339 1.6014 -6.5887 23 6 6.8609 5.5031 -6.0584 24 6 6.9868 4.3579 -7.0663 25 6 6.3364 1.3592 0.4439 26 6 6.2726 2.5931 1.3463 27 6 3.4311 1.2848 0.0012 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3203 -0.0017 32 1 1.3340 4.5114 0.0000 33 1 3.7922 4.6380 0.0024 34 1 6.6493 4.2110 -0.8580 35 1 7.1183 4.5321 -3.1255 36 1 6.8581 2.2382 -4.7915 37 1 5.4933 3.3457 -5.0732 38 1 11.4838 2.3283 -6.1214 39 1 5.8587 5.7702 -5.7228 40 1 7.5635 6.3316 -6.1477 41 1 7.7722 4.4334 -7.8183 42 1 6.0679 3.8713 -7.3935 43 1 5.7582 0.4854 0.7440 44 1 7.2827 1.1484 -0.0543 45 1 7.1769 3.1940 1.4418 46 1 5.6524 2.5315 2.2405 47 1 4.0206 0.3799 0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355844106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:28 Heat of formation + Delta-G solvation = 20.606937 kcal Electronic energy + Delta-G solvation = -28186.936876 eV Core-core repulsion = 24337.258688 eV Total energy + Delta-G solvation = -3849.678188 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.49918 -39.56198 -38.18072 -37.02928 -36.34706 -33.37483 -32.29930 -32.08855 -30.89153 -30.08722 -27.42209 -26.62743 -25.14096 -23.55235 -22.93453 -21.92159 -21.74123 -20.93870 -19.76348 -19.22833 -18.05065 -17.69967 -16.55253 -16.29090 -16.07329 -15.87682 -15.78106 -15.23589 -15.02188 -14.48320 -14.28405 -13.99538 -13.95987 -13.66977 -13.20169 -12.96547 -12.80792 -12.74224 -12.43301 -12.21349 -12.05704 -11.75255 -11.57255 -11.28634 -11.13607 -11.03802 -10.80627 -10.68795 -10.51456 -10.45832 -10.15510 -9.77477 -9.58424 -9.16335 -8.95218 -8.73229 -8.61354 -8.56949 -8.22567 -8.10198 -6.14805 -4.18921 1.25161 1.44745 2.93892 3.18678 3.30528 3.40703 3.47191 3.52747 3.72414 4.01121 4.36693 4.41795 4.60932 4.69274 4.82205 4.87932 4.92846 4.96305 4.98622 5.08680 5.15237 5.23478 5.26450 5.41771 5.48057 5.51636 5.65403 5.72151 5.87972 5.96965 6.03959 6.08929 6.09547 6.24691 6.30430 6.37315 6.43558 6.51332 6.57452 6.67485 6.71594 6.82525 7.03082 7.10159 7.23560 7.32499 7.43944 7.69662 8.42194 8.59648 8.85107 9.17073 9.48765 10.96560 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.003051 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.716240 B = 9174.201626 C = 9519.611236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.210 4.210 5 C -0.084 4.084 6 C -0.138 4.138 7 C 0.000 4.000 8 C 0.160 3.840 9 N -0.718 5.718 10 C 0.702 3.298 11 O -0.588 6.588 12 N -0.720 5.720 13 C 0.176 3.824 14 C -0.015 4.015 15 C -0.488 4.488 16 H 0.077 0.923 17 C 0.080 3.920 18 N -0.896 5.896 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.293 1.293 22 H -0.255 1.255 23 C -0.178 4.178 24 C -0.192 4.192 25 C -0.171 4.171 26 C -0.161 4.161 27 C -0.124 4.124 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.397 0.603 35 H 0.398 0.602 36 H 0.064 0.936 37 H 0.039 0.961 38 H 0.265 0.735 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.244 0.282 15.165 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.229 4.229 5 C -0.102 4.102 6 C -0.156 4.156 7 C -0.002 4.002 8 C 0.071 3.929 9 N -0.374 5.374 10 C 0.402 3.598 11 O -0.465 6.465 12 N -0.373 5.373 13 C 0.052 3.948 14 C -0.016 4.016 15 C -0.526 4.526 16 H 0.095 0.905 17 C -0.123 4.123 18 N -0.533 5.533 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.220 1.220 22 H -0.180 1.180 23 C -0.216 4.216 24 C -0.230 4.230 25 C -0.210 4.210 26 C -0.198 4.198 27 C -0.143 4.143 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.232 0.768 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.108 0.892 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.595 -0.910 14.799 23.009 hybrid contribution -0.024 0.203 -0.669 0.700 sum -17.619 -0.707 14.130 22.596 Atomic orbital electron populations 1.23022 0.78678 1.03742 1.01199 1.86073 1.21133 1.27045 1.88903 1.18915 0.92162 0.84068 0.96966 1.21167 0.99724 0.92486 1.09536 1.20834 0.94414 0.96867 0.98134 1.20784 0.93501 0.97954 1.03390 1.18750 0.92322 0.92357 0.96724 1.18571 0.87655 0.98036 0.88627 1.44386 1.59540 1.29921 1.03552 1.15975 0.80700 0.82854 0.80234 1.90899 1.42740 1.30780 1.82092 1.44965 1.54751 1.30636 1.06928 1.21012 0.96725 0.98485 0.78570 1.19626 0.95863 0.94282 0.91879 1.20173 0.87891 1.15119 1.29369 0.90485 1.24951 0.94461 0.97055 0.95797 1.69888 1.05306 1.33986 1.44144 0.86890 0.80728 0.80786 0.81141 1.20398 1.21997 1.17963 1.22825 1.00211 0.93137 1.05391 1.22955 1.01661 1.04081 0.94344 1.23440 1.02727 0.92566 1.02222 1.23365 1.02087 1.01782 0.92581 1.20197 0.91096 0.98326 1.04665 0.92831 0.92726 0.88391 0.85793 0.85936 0.86156 0.76786 0.76846 0.91822 0.94302 0.92519 0.90910 0.89466 0.89162 0.90772 0.87890 0.87800 0.87764 0.87701 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.00 10.50 -19.41 -0.20 -4.20 16 3 C 0.12 1.67 6.69 -39.21 -0.26 1.41 16 4 C -0.21 -2.45 9.04 -39.43 -0.36 -2.81 16 5 C -0.08 -0.97 10.04 -39.61 -0.40 -1.37 16 6 C -0.14 -1.74 9.66 -39.56 -0.38 -2.12 16 7 C 0.00 0.00 4.54 -104.65 -0.47 -0.47 16 8 C 0.16 2.11 2.02 -132.97 -0.27 1.84 16 9 N -0.72 -10.32 5.38 -53.50 -0.29 -10.61 16 10 C 0.70 13.26 8.44 -86.92 -0.73 12.53 16 11 O -0.59 -13.28 15.76 5.28 0.08 -13.20 16 12 N -0.72 -13.70 5.46 -65.22 -0.36 -14.05 16 13 C 0.18 3.81 5.11 -4.04 -0.02 3.79 16 14 C -0.02 -0.34 0.82 -155.67 -0.13 -0.46 16 15 C -0.49 -12.87 9.28 -34.44 -0.32 -13.19 16 16 H 0.08 2.18 8.06 -52.49 -0.42 1.76 16 17 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 18 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 19 Si 0.88 21.68 24.98 -169.99 -4.25 17.43 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 22 H -0.26 -6.13 5.64 56.52 0.32 -5.81 16 23 C -0.18 -3.43 9.96 -26.70 -0.27 -3.70 16 24 C -0.19 -3.99 7.70 -26.70 -0.21 -4.19 16 25 C -0.17 -2.11 9.71 -26.73 -0.26 -2.37 16 26 C -0.16 -1.58 10.16 -26.73 -0.27 -1.85 16 27 C -0.12 -1.79 9.24 -39.43 -0.36 -2.15 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.12 1.12 6.30 -52.49 -0.33 0.79 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.40 4.57 8.85 -40.82 -0.36 4.21 16 35 H 0.40 6.86 8.47 -40.82 -0.35 6.52 16 36 H 0.06 1.55 6.41 -51.93 -0.33 1.22 16 37 H 0.04 0.82 8.09 -51.93 -0.42 0.40 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.07 1.26 8.14 -51.92 -0.42 0.83 16 40 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.09 1.95 7.43 -51.93 -0.39 1.57 16 42 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.10 1.18 6.54 -51.93 -0.34 0.84 16 44 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.13 1.88 6.39 -52.49 -0.34 1.54 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -33.53 386.87 -9.32 -42.84 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -7.09 Total: 13.57 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -3.82 Total: -11.75 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.13 Total: -50.52 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.12 Total: -17.41 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.25 Total: 17.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.53 -9.32 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355844106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.450 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds