Wall clock time and date at job start Tue Mar 31 2020 15:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35896 * 116.99669 * 2 1 4 4 C 1.38755 * 120.05921 * 359.97438 * 3 2 1 5 5 C 1.38122 * 119.94282 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05816 * 359.97438 * 5 4 3 7 7 C 1.38244 * 120.11164 * 0.30048 * 6 5 4 8 8 C 1.50694 * 119.97341 * 179.72771 * 7 6 5 9 9 N 1.46503 * 115.54802 * 306.01037 * 8 7 6 10 10 C 1.34778 * 120.00054 * 296.25535 * 9 8 7 11 11 O 1.21593 * 119.99774 * 5.16448 * 10 9 8 12 12 N 1.34775 * 120.00198 * 185.17518 * 10 9 8 13 13 C 1.46505 * 120.00307 * 175.09582 * 12 10 9 14 14 C 1.52995 * 109.47292 * 185.05301 * 13 12 10 15 15 C 1.50701 * 115.54915 * 64.88200 * 14 13 12 16 16 H 1.07997 * 120.00622 * 265.70545 * 15 14 13 17 17 C 1.37883 * 119.99783 * 85.70829 * 15 14 13 18 18 N 1.31519 * 119.99854 * 177.92728 * 17 15 14 19 19 Si 1.86794 * 119.99869 * 357.91820 * 17 15 14 20 20 H 1.48509 * 109.46839 * 90.91186 * 19 17 15 21 21 H 1.48498 * 109.47400 * 210.90916 * 19 17 15 22 22 H 1.48503 * 109.47628 * 330.91501 * 19 17 15 23 23 C 1.52995 * 117.50191 * 279.21813 * 14 13 12 24 24 C 1.52995 * 117.50227 * 210.55586 * 14 13 12 25 25 C 1.53002 * 117.50054 * 160.30471 * 8 7 6 26 26 C 1.52998 * 60.00021 * 252.50614 * 25 8 7 27 27 C 1.38170 * 120.05348 * 359.44553 * 7 6 5 28 28 H 1.08997 * 109.47211 * 300.00676 * 1 2 3 29 29 H 1.09004 * 109.46584 * 60.00391 * 1 2 3 30 30 H 1.09003 * 109.47047 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.02674 * 359.95639 * 4 3 2 32 32 H 1.08001 * 119.97260 * 180.02562 * 5 4 3 33 33 H 1.07993 * 119.94338 * 180.02562 * 6 5 4 34 34 H 0.97002 * 120.00094 * 116.25431 * 9 8 7 35 35 H 0.97004 * 119.99840 * 355.08858 * 12 10 9 36 36 H 1.09000 * 109.46483 * 305.05346 * 13 12 10 37 37 H 1.09000 * 109.47204 * 65.05349 * 13 12 10 38 38 H 0.97001 * 119.99727 * 179.97438 * 18 17 15 39 39 H 1.09010 * 117.49718 * 359.97438 * 23 14 13 40 40 H 1.09000 * 117.50381 * 145.01636 * 23 14 13 41 41 H 1.09001 * 117.50336 * 214.98308 * 24 14 13 42 42 H 1.09006 * 117.49646 * 359.97263 * 24 14 13 43 43 H 1.08992 * 117.49598 * 0.02562 * 25 8 7 44 44 H 1.09002 * 117.50024 * 145.01772 * 25 8 7 45 45 H 1.08996 * 117.49807 * 252.51130 * 26 25 8 46 46 H 1.08995 * 117.51519 * 107.47801 * 26 25 8 47 47 H 1.08001 * 120.03004 * 180.25587 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6758 0.0016 7 6 4.0560 2.5172 -0.0036 8 6 5.5608 2.5982 -0.0080 9 7 6.1466 3.4109 -1.0770 10 6 5.9869 3.0468 -2.3648 11 8 5.2793 2.0985 -2.6453 12 7 6.6117 3.7336 -3.3418 13 6 6.5255 3.2745 -4.7303 14 6 7.4176 4.1494 -5.6131 15 6 8.8955 4.0638 -5.3310 16 1 9.3608 4.7771 -4.6669 17 6 9.6537 3.0746 -5.9207 18 7 10.9504 3.0244 -5.7068 19 14 8.8391 1.8057 -7.0233 20 1 8.8578 2.2860 -8.4284 21 1 9.5780 0.5210 -6.9294 22 1 7.4339 1.6014 -6.5887 23 6 6.8609 5.5031 -6.0584 24 6 6.9868 4.3579 -7.0663 25 6 6.3364 1.3592 0.4439 26 6 6.2726 2.5931 1.3463 27 6 3.4311 1.2848 0.0012 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3203 -0.0017 32 1 1.3340 4.5114 0.0000 33 1 3.7922 4.6380 0.0024 34 1 6.6493 4.2110 -0.8580 35 1 7.1183 4.5321 -3.1255 36 1 6.8581 2.2382 -4.7915 37 1 5.4933 3.3457 -5.0732 38 1 11.4838 2.3283 -6.1214 39 1 5.8587 5.7702 -5.7228 40 1 7.5635 6.3316 -6.1477 41 1 7.7722 4.4334 -7.8183 42 1 6.0679 3.8713 -7.3935 43 1 5.7582 0.4854 0.7440 44 1 7.2827 1.1484 -0.0543 45 1 7.1769 3.1940 1.4418 46 1 5.6524 2.5315 2.2405 47 1 4.0206 0.3799 0.0013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355844106.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:27 Heat of formation + Delta-G solvation = -2.065251 kcal Electronic energy + Delta-G solvation = -28187.920016 eV Core-core repulsion = 24337.258688 eV Total energy + Delta-G solvation = -3850.661328 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.54202 -40.75304 -39.39024 -38.55117 -37.36418 -34.97050 -34.22733 -33.52968 -31.79504 -30.99095 -28.39656 -28.11972 -27.02528 -24.57657 -23.81889 -23.34813 -22.84413 -22.22773 -21.17257 -20.74386 -19.27917 -18.99242 -18.27963 -17.31888 -17.10119 -16.97407 -16.75813 -16.62576 -16.42515 -15.94704 -15.64330 -15.47795 -14.96463 -14.84769 -14.72516 -14.49087 -14.22944 -13.92313 -13.77253 -13.59153 -13.09264 -12.96820 -12.65608 -12.60951 -12.43917 -12.18976 -12.08202 -11.98421 -11.94171 -11.73495 -11.61080 -11.48350 -11.20853 -10.97169 -10.65851 -10.37307 -10.21636 -9.78519 -9.56576 -9.13300 -8.30383 -6.35555 0.31518 0.50438 1.32320 1.38873 1.48919 1.69864 2.22205 2.36011 2.40375 2.62342 2.98879 3.05497 3.13973 3.40598 3.58187 3.85362 3.91950 4.00292 4.05564 4.15463 4.29898 4.35207 4.37640 4.38084 4.43291 4.50440 4.54921 4.59750 4.69685 4.70823 4.71797 4.84111 4.87897 4.95425 5.06448 5.10455 5.17573 5.31909 5.32713 5.44576 5.49910 5.57305 5.65704 5.70756 5.71934 5.82398 6.11585 6.28915 6.46867 6.72492 7.22844 7.34768 7.71884 8.84268 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.003051 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.716240 B = 9174.201626 C = 9519.611236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.111 3.889 4 C -0.211 4.211 5 C -0.083 4.083 6 C -0.150 4.150 7 C -0.011 4.011 8 C 0.135 3.865 9 N -0.701 5.701 10 C 0.700 3.300 11 O -0.627 6.627 12 N -0.718 5.718 13 C 0.188 3.812 14 C -0.039 4.039 15 C -0.475 4.475 16 H 0.047 0.953 17 C 0.028 3.972 18 N -0.944 5.944 19 Si 0.925 3.075 20 H -0.265 1.265 21 H -0.303 1.303 22 H -0.244 1.244 23 C -0.149 4.149 24 C -0.193 4.193 25 C -0.189 4.189 26 C -0.121 4.121 27 C -0.153 4.153 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.133 0.867 34 H 0.412 0.588 35 H 0.406 0.594 36 H 0.031 0.969 37 H 0.049 0.951 38 H 0.264 0.736 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.086 0.914 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.907 1.769 15.836 25.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.066 3.934 4 C -0.230 4.230 5 C -0.101 4.101 6 C -0.168 4.168 7 C -0.012 4.012 8 C 0.047 3.953 9 N -0.357 5.357 10 C 0.400 3.600 11 O -0.508 6.508 12 N -0.372 5.372 13 C 0.063 3.937 14 C -0.040 4.040 15 C -0.512 4.512 16 H 0.065 0.935 17 C -0.170 4.170 18 N -0.584 5.584 19 Si 0.751 3.249 20 H -0.190 1.190 21 H -0.231 1.231 22 H -0.168 1.168 23 C -0.186 4.186 24 C -0.231 4.231 25 C -0.227 4.227 26 C -0.159 4.159 27 C -0.172 4.172 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.151 0.849 34 H 0.250 0.750 35 H 0.241 0.759 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.123 0.877 44 H 0.105 0.895 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -20.268 0.621 15.505 25.527 hybrid contribution 0.756 -0.231 -0.793 1.120 sum -19.512 0.390 14.712 24.440 Atomic orbital electron populations 1.23333 0.76426 1.05471 1.02264 1.86042 1.23571 1.27065 1.88878 1.19114 0.92143 0.85084 0.97108 1.21491 1.01061 0.91874 1.08573 1.21235 0.94269 0.97964 0.96628 1.21029 0.94252 0.97985 1.03550 1.18856 0.92619 0.92606 0.97143 1.18856 0.87885 0.98686 0.89878 1.44204 1.58875 1.30289 1.02299 1.16142 0.80218 0.82264 0.81362 1.90872 1.44475 1.32469 1.82978 1.44845 1.55027 1.30996 1.06336 1.20697 0.96732 0.96511 0.79802 1.19432 0.93528 0.97416 0.93596 1.20356 0.90169 1.13329 1.27376 0.93474 1.25649 0.94762 0.99066 0.97524 1.70010 1.06809 1.35242 1.46320 0.86109 0.80244 0.78305 0.80273 1.18988 1.23060 1.16802 1.22857 1.01371 0.91592 1.02772 1.23022 1.02172 1.04854 0.93038 1.23431 1.01913 0.93515 1.03836 1.23484 1.02046 0.98958 0.91373 1.20286 0.91976 0.98286 1.06625 0.91087 0.92189 0.86520 0.83146 0.82953 0.84893 0.75023 0.75864 0.95112 0.93320 0.92728 0.87939 0.89423 0.90263 0.88544 0.87739 0.89507 0.85918 0.85691 0.86569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -8.50 10.50 -92.38 -0.97 -9.47 16 3 C 0.11 2.94 6.69 22.51 0.15 3.09 16 4 C -0.21 -4.51 9.04 22.37 0.20 -4.31 16 5 C -0.08 -1.70 10.04 22.25 0.22 -1.47 16 6 C -0.15 -3.52 9.66 22.28 0.22 -3.31 16 7 C -0.01 -0.29 4.54 -19.88 -0.09 -0.38 16 8 C 0.14 3.48 2.02 2.86 0.01 3.48 16 9 N -0.70 -19.54 5.38 -441.44 -2.38 -21.92 16 10 C 0.70 26.25 8.44 179.05 1.51 27.76 16 11 O -0.63 -28.70 15.76 -4.01 -0.06 -28.76 16 12 N -0.72 -26.84 5.46 -478.53 -2.61 -29.45 16 13 C 0.19 7.95 5.11 86.38 0.44 8.39 16 14 C -0.04 -1.65 0.82 -52.93 -0.04 -1.70 16 15 C -0.47 -25.20 9.28 25.60 0.24 -24.96 16 16 H 0.05 2.73 8.06 -2.91 -0.02 2.70 16 17 C 0.03 1.59 5.47 84.66 0.46 2.05 16 18 N -0.94 -57.66 13.96 21.45 0.30 -57.37 16 19 Si 0.92 44.95 24.98 68.60 1.71 46.66 16 20 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 22 H -0.24 -11.37 5.64 99.48 0.56 -10.81 16 23 C -0.15 -5.28 9.96 30.62 0.30 -4.97 16 24 C -0.19 -7.49 7.70 30.62 0.24 -7.26 16 25 C -0.19 -4.70 9.71 30.59 0.30 -4.41 16 26 C -0.12 -2.16 10.16 30.59 0.31 -1.85 16 27 C -0.15 -4.50 9.24 22.37 0.21 -4.29 16 28 H 0.07 0.75 7.66 -2.39 -0.02 0.74 16 29 H 0.06 0.79 7.66 -2.38 -0.02 0.77 16 30 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.15 2.27 6.30 -2.91 -0.02 2.25 16 32 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 33 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 34 H 0.41 8.84 8.85 -92.71 -0.82 8.02 16 35 H 0.41 13.62 8.47 -92.71 -0.79 12.84 16 36 H 0.03 1.50 6.41 -2.39 -0.02 1.48 16 37 H 0.05 1.97 8.09 -2.39 -0.02 1.95 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 40 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.08 3.26 7.43 -2.39 -0.02 3.25 16 42 H 0.10 3.33 8.14 -2.38 -0.02 3.31 16 43 H 0.10 2.51 6.54 -2.39 -0.02 2.50 16 44 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.12 3.59 6.39 -2.91 -0.02 3.57 16 Total: -1.00 -74.88 386.87 1.03 -73.85 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -0.75 Total: 39.20 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.78 Total: -12.75 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -4.69 Total: -108.73 kcal Atomic # 8 Polarization: -37.19 SS G_CDS: -1.03 Total: -38.23 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.71 Total: 46.66 kcal Total: -74.88 1.03 -73.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355844106.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.787 kcal (2) G-P(sol) polarization free energy of solvation -74.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds