Wall clock time and date at job start Tue Mar 31 2020 16:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 113.99946 * 2 1 4 4 C 1.50703 * 109.47398 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.92705 * 270.03079 * 4 3 2 6 6 C 1.38341 * 120.29055 * 179.97438 * 5 4 3 7 7 C 1.37983 * 120.14385 * 359.73983 * 6 5 4 8 8 C 1.39561 * 119.84890 * 0.48902 * 7 6 5 9 9 C 1.47846 * 120.14042 * 179.79002 * 8 7 6 10 10 O 1.21554 * 120.00188 * 135.81150 * 9 8 7 11 11 N 1.34782 * 120.00337 * 315.81592 * 9 8 7 12 12 C 1.47163 * 120.71126 * 184.21318 * 11 9 8 13 13 C 1.53888 * 108.02623 * 132.75060 * 12 11 9 14 14 H 1.09002 * 112.57878 * 182.22259 * 13 12 11 15 15 C 1.54130 * 107.71174 * 306.32397 * 13 12 11 16 16 C 1.54283 * 104.88755 * 89.41487 * 15 13 12 17 17 C 1.54545 * 104.85071 * 359.80605 * 16 15 13 18 18 H 1.09000 * 112.18099 * 146.41658 * 17 16 15 19 19 C 1.49249 * 120.76575 * 4.29483 * 11 9 8 20 20 N 1.48308 * 104.35497 * 24.70518 * 17 16 15 21 21 C 1.36933 * 128.07311 * 139.08163 * 20 17 16 22 22 H 1.08000 * 120.00381 * 345.05050 * 21 20 17 23 23 C 1.38814 * 119.99763 * 165.04583 * 21 20 17 24 24 N 1.31616 * 120.00105 * 350.19743 * 23 21 20 25 25 Si 1.86802 * 120.00013 * 170.19976 * 23 21 20 26 26 H 1.48495 * 109.47396 * 180.02562 * 25 23 21 27 27 H 1.48508 * 109.46811 * 299.99996 * 25 23 21 28 28 H 1.48492 * 109.47316 * 59.99978 * 25 23 21 29 29 C 1.37933 * 119.92550 * 90.00115 * 4 3 2 30 30 H 1.08999 * 109.46938 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46581 * 299.99396 * 1 2 3 32 32 H 1.08997 * 109.47230 * 59.98973 * 1 2 3 33 33 H 1.09009 * 109.47272 * 60.00574 * 3 2 1 34 34 H 1.08999 * 109.47902 * 300.00409 * 3 2 1 35 35 H 1.07992 * 119.85266 * 359.97057 * 5 4 3 36 36 H 1.07997 * 119.92636 * 179.97438 * 6 5 4 37 37 H 1.07992 * 120.07384 * 180.25410 * 7 6 5 38 38 H 1.08997 * 109.74921 * 13.11664 * 12 11 9 39 39 H 1.08996 * 109.78888 * 252.40333 * 12 11 9 40 40 H 1.08997 * 110.50411 * 330.47584 * 15 13 12 41 41 H 1.08997 * 110.27780 * 208.23115 * 15 13 12 42 42 H 1.09012 * 110.36019 * 240.96367 * 16 15 13 43 43 H 1.08998 * 110.36802 * 118.65307 * 16 15 13 44 44 H 1.08992 * 110.52001 * 107.81914 * 19 11 9 45 45 H 1.09006 * 109.74848 * 346.59772 * 19 11 9 46 46 H 0.96997 * 120.00029 * 179.97438 * 24 23 21 47 47 H 1.08005 * 120.07147 * 0.02562 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2012 1.1312 1.1984 6 6 5.5803 1.0215 1.2066 7 6 6.2776 0.9612 0.0175 8 6 5.5895 1.0213 -1.1952 9 6 6.3307 0.9619 -2.4731 10 8 5.9240 0.2615 -3.3795 11 7 7.4573 1.6842 -2.6330 12 6 8.1567 1.7091 -3.9276 13 6 8.4816 3.1749 -4.2651 14 1 8.9693 3.2830 -5.2340 15 6 7.1680 3.9770 -4.1842 16 6 7.0796 4.4459 -2.7170 17 6 8.3490 3.8783 -2.0426 18 1 8.7324 4.5391 -1.2651 19 6 8.0243 2.4749 -1.5013 20 7 9.3121 3.7066 -3.1573 21 6 10.6537 3.9806 -3.1639 22 1 11.0847 4.5880 -2.3818 23 6 11.4598 3.4776 -4.1759 24 7 10.9810 2.5853 -5.0165 25 14 13.2243 4.0673 -4.3446 26 1 13.8670 3.3831 -5.4952 27 1 13.2362 5.5347 -4.5723 28 1 13.9722 3.7533 -3.1008 29 6 4.1980 1.1325 -1.1964 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 1.6887 1.8464 0.8901 34 1 1.6886 1.8465 -0.8899 35 1 3.6598 1.1739 2.1318 36 1 6.1118 0.9792 2.1457 37 1 7.3538 0.8714 0.0252 38 1 7.5153 1.2864 -4.7009 39 1 9.0798 1.1335 -3.8594 40 1 6.3172 3.3422 -4.4315 41 1 7.2076 4.8353 -4.8549 42 1 6.1851 4.0416 -2.2429 43 1 7.0776 5.5347 -2.6662 44 1 8.9334 2.0058 -1.1251 45 1 7.2893 2.5503 -0.6999 46 1 11.5442 2.2341 -5.7239 47 1 3.6593 1.1757 -2.1315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029382566.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:19:07 Heat of formation + Delta-G solvation = -22.248717 kcal Electronic energy + Delta-G solvation = -29143.092833 eV Core-core repulsion = 25291.556285 eV Total energy + Delta-G solvation = -3851.536548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82432 -40.30202 -39.19782 -38.32199 -35.46764 -34.22999 -33.27640 -32.37292 -31.81383 -31.03876 -28.24488 -27.98046 -26.30948 -25.86891 -25.42306 -24.09766 -22.73812 -21.26295 -21.25230 -20.37670 -18.78747 -17.86666 -17.52055 -17.29686 -17.12391 -16.86982 -16.68448 -16.52964 -15.96068 -15.80264 -15.46818 -14.96186 -14.88814 -14.70572 -14.44534 -14.33066 -13.82600 -13.55897 -13.54917 -13.29337 -13.15507 -13.10046 -12.85787 -12.69444 -12.63169 -12.54040 -12.33087 -12.02943 -11.94600 -11.83540 -11.52206 -11.47814 -11.15633 -10.96164 -10.66296 -10.61125 -9.97354 -9.80889 -9.73409 -8.71779 -7.84513 -5.20309 -0.02375 0.29356 1.49801 1.51668 1.57703 1.69851 2.02590 2.51419 2.60377 3.18881 3.35004 3.41160 3.51781 3.83141 3.92598 4.03760 4.09749 4.11378 4.22049 4.25622 4.30958 4.33570 4.42002 4.42924 4.53153 4.57907 4.60136 4.65766 4.70606 4.81687 4.86051 4.89510 4.95619 5.00601 5.04671 5.06903 5.11385 5.24160 5.34743 5.38931 5.39910 5.51834 5.52117 5.56988 5.80440 5.91465 6.21843 6.22903 6.50595 7.05336 7.13099 7.73228 8.52168 9.27242 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025390 B = 0.002988 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.518628 B = 9369.991056 C = 9608.317822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.103 3.897 4 C -0.104 4.104 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.090 4.090 8 C -0.138 4.138 9 C 0.546 3.454 10 O -0.597 6.597 11 N -0.586 5.586 12 C 0.129 3.871 13 C 0.168 3.832 14 H 0.079 0.921 15 C -0.129 4.129 16 C -0.110 4.110 17 C 0.127 3.873 18 H 0.098 0.902 19 C 0.093 3.907 20 N -0.602 5.602 21 C -0.231 4.231 22 H 0.085 0.915 23 C -0.058 4.058 24 N -0.940 5.940 25 Si 0.972 3.028 26 H -0.302 1.302 27 H -0.281 1.281 28 H -0.277 1.277 29 C -0.063 4.063 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.135 0.865 38 H 0.053 0.947 39 H 0.042 0.958 40 H 0.050 0.950 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.115 0.885 46 H 0.246 0.754 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.976 1.148 16.150 24.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.027 3.973 4 C -0.104 4.104 5 C -0.091 4.091 6 C -0.134 4.134 7 C -0.109 4.109 8 C -0.141 4.141 9 C 0.336 3.664 10 O -0.480 6.480 11 N -0.316 5.316 12 C 0.005 3.995 13 C 0.060 3.940 14 H 0.097 0.903 15 C -0.168 4.168 16 C -0.148 4.148 17 C 0.020 3.980 18 H 0.116 0.884 19 C -0.030 4.030 20 N -0.324 5.324 21 C -0.360 4.360 22 H 0.102 0.898 23 C -0.252 4.252 24 N -0.587 5.587 25 Si 0.802 3.198 26 H -0.228 1.228 27 H -0.207 1.207 28 H -0.203 1.203 29 C -0.082 4.082 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.177 0.823 36 H 0.183 0.817 37 H 0.153 0.847 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.133 0.867 46 H 0.055 0.945 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.796 0.620 15.552 23.642 hybrid contribution 1.204 -0.053 -1.191 1.695 sum -16.592 0.567 14.361 21.951 Atomic orbital electron populations 1.22942 0.79261 1.03751 1.01163 1.87943 1.21591 1.28313 1.95658 1.21430 0.88312 0.84985 1.02576 1.19729 0.95352 1.02464 0.92853 1.21586 0.94431 0.95021 0.98021 1.21453 0.94328 0.99336 0.98263 1.21622 1.00729 0.97041 0.91467 1.19755 0.94483 1.07293 0.92608 1.18938 0.80481 0.79053 0.87930 1.90706 1.69701 1.42754 1.44882 1.48652 1.24030 1.45823 1.13103 1.21973 0.93999 0.99940 0.83624 1.21584 0.89103 0.89375 0.93909 0.90301 1.22451 0.97223 0.99231 0.97882 1.22388 0.97339 1.00445 0.94677 1.22250 0.90059 0.93994 0.91706 0.88423 1.23317 0.98498 0.92984 0.88193 1.45330 1.03643 1.75099 1.08323 1.19296 0.82572 1.24556 1.09586 0.89771 1.25566 1.01438 0.98475 0.99695 1.70042 1.36761 1.31791 1.20111 0.85250 0.80311 0.77518 0.76746 1.22847 1.20691 1.20343 1.21009 0.92011 0.96548 0.98682 0.88964 0.92159 0.93438 0.89405 0.92001 0.82298 0.81741 0.84683 0.92868 0.93982 0.93107 0.92493 0.91167 0.90932 0.92117 0.86717 0.94450 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 11.01 113.37 1.25 1.56 16 2 O -0.42 -8.43 10.69 -148.98 -1.59 -10.02 16 3 C 0.10 1.71 6.06 71.24 0.43 2.14 16 4 C -0.10 -2.17 5.50 -19.90 -0.11 -2.28 16 5 C -0.07 -1.18 9.69 22.33 0.22 -0.97 16 6 C -0.12 -1.96 10.03 22.23 0.22 -1.73 16 7 C -0.09 -2.13 7.33 22.53 0.17 -1.97 16 8 C -0.14 -4.21 5.21 -20.09 -0.10 -4.31 16 9 C 0.55 21.53 7.32 86.79 0.64 22.17 16 10 O -0.60 -28.35 16.46 -3.88 -0.06 -28.41 16 11 N -0.59 -23.20 2.28 -812.93 -1.86 -25.05 16 12 C 0.13 6.10 5.78 86.55 0.50 6.60 16 13 C 0.17 7.92 3.10 45.33 0.14 8.06 16 14 H 0.08 4.33 6.40 -2.39 -0.02 4.31 16 15 C -0.13 -5.01 6.16 31.41 0.19 -4.82 16 16 C -0.11 -3.60 6.19 31.55 0.20 -3.40 16 17 C 0.13 4.59 4.27 45.47 0.19 4.78 16 18 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 19 C 0.09 3.11 4.55 86.15 0.39 3.50 16 20 N -0.60 -28.29 2.80 -637.47 -1.79 -30.08 16 21 C -0.23 -11.98 10.37 84.03 0.87 -11.10 16 22 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 23 C -0.06 -3.11 5.41 84.86 0.46 -2.65 16 24 N -0.94 -54.05 10.42 21.65 0.23 -53.82 16 25 Si 0.97 44.17 29.56 68.60 2.03 46.19 16 26 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 29 C -0.06 -1.75 9.33 22.52 0.21 -1.54 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 0.94 8.09 -2.38 -0.02 0.92 16 34 H 0.06 0.97 8.08 -2.39 -0.02 0.96 16 35 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 37 H 0.14 3.13 6.43 -2.91 -0.02 3.11 16 38 H 0.05 2.61 7.15 -2.39 -0.02 2.59 16 39 H 0.04 2.28 7.79 -2.39 -0.02 2.27 16 40 H 0.05 1.98 7.83 -2.39 -0.02 1.96 16 41 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.07 2.08 7.86 -2.38 -0.02 2.06 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.06 2.15 8.12 -2.39 -0.02 2.14 16 45 H 0.12 3.01 4.65 -2.38 -0.01 2.99 16 46 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 47 H 0.11 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -70.92 372.44 3.78 -67.14 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.96 Total: 20.01 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: 5.86 Total: 14.04 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -3.42 Total: -108.95 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.66 Total: -38.43 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -70.92 3.78 -67.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029382566.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.893 kcal (2) G-P(sol) polarization free energy of solvation -70.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds