Wall clock time and date at job start Tue Mar 31 2020 16:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35644 * 117.00004 * 2 1 4 4 C 1.38718 * 120.15113 * 0.02562 * 3 2 1 5 5 C 1.38049 * 120.08185 * 179.97438 * 4 3 2 6 6 C 1.38546 * 120.39311 * 359.97438 * 5 4 3 7 7 C 1.37787 * 120.30001 * 359.76603 * 6 5 4 8 8 C 1.39702 * 119.90938 * 0.51113 * 7 6 5 9 9 C 1.47526 * 120.19458 * 179.74412 * 8 7 6 10 10 O 1.21593 * 120.00277 * 204.04436 * 9 8 7 11 11 N 1.34789 * 120.00154 * 24.04655 * 9 8 7 12 12 C 1.47662 * 134.45936 * 185.15992 * 11 9 8 13 13 C 1.53510 * 85.97807 * 204.33027 * 12 11 9 14 14 C 1.47661 * 134.45187 * 5.18010 * 11 9 8 15 15 C 1.52667 * 113.57102 * 91.01651 * 13 12 11 16 16 C 1.53329 * 109.11376 * 73.81467 * 15 13 12 17 17 N 1.46879 * 108.76745 * 52.40487 * 16 15 13 18 18 C 1.36936 * 120.47140 * 124.47044 * 17 16 15 19 19 H 1.07998 * 119.99625 * 327.89472 * 18 17 16 20 20 C 1.38804 * 120.00199 * 148.16728 * 18 17 16 21 21 N 1.31616 * 120.00094 * 349.65546 * 20 18 17 22 22 Si 1.86798 * 120.00148 * 169.64432 * 20 18 17 23 23 H 1.48506 * 109.47107 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47023 * 120.00079 * 22 20 18 25 25 H 1.48494 * 109.47536 * 240.00493 * 22 20 18 26 26 C 1.46891 * 119.06449 * 304.74685 * 17 16 15 27 27 C 1.52673 * 113.56103 * 222.23247 * 13 12 11 28 28 H 1.09003 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46827 * 300.00407 * 1 2 3 30 30 H 1.08993 * 109.46962 * 60.00433 * 1 2 3 31 31 H 1.07998 * 119.95363 * 359.96485 * 4 3 2 32 32 H 1.08000 * 119.80291 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.84743 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.04316 * 180.27858 * 7 6 5 35 35 H 1.09003 * 113.79146 * 90.06333 * 12 11 9 36 36 H 1.09003 * 113.89826 * 318.61207 * 12 11 9 37 37 H 1.08997 * 113.79425 * 41.39978 * 14 11 9 38 38 H 1.08998 * 113.79534 * 269.93405 * 14 11 9 39 39 H 1.09001 * 109.53025 * 313.92280 * 15 13 12 40 40 H 1.08997 * 109.59085 * 193.74529 * 15 13 12 41 41 H 1.09003 * 109.59126 * 292.61566 * 16 15 13 42 42 H 1.09006 * 109.58884 * 172.19009 * 16 15 13 43 43 H 0.96999 * 120.00597 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.58835 * 175.03344 * 26 17 16 45 45 H 1.08996 * 109.58791 * 295.47394 * 26 17 16 46 46 H 1.08990 * 109.52981 * 46.08187 * 27 13 12 47 47 H 1.09001 * 109.52410 * 166.22496 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9207 3.6032 0.0011 6 6 3.3038 3.6836 0.0016 7 6 4.0668 2.5362 0.0065 8 6 3.4442 1.2856 0.0001 9 6 4.2550 0.0532 -0.0005 10 8 3.7875 -0.9820 -0.4346 11 7 5.5140 0.0745 0.4804 12 6 6.6128 -0.9098 0.5463 13 6 7.1291 -0.0921 1.7385 14 6 6.3471 1.0915 1.1526 15 6 6.5941 -0.5720 3.0854 16 6 7.2921 -1.8835 3.4645 17 7 8.7452 -1.6874 3.3783 18 6 9.5466 -1.9496 4.4573 19 1 9.1717 -1.7956 5.4583 20 6 10.8424 -2.4080 4.2643 21 7 11.2358 -2.7843 3.0660 22 14 12.0283 -2.4906 5.7053 23 1 11.3461 -2.0148 6.9356 24 1 12.4753 -3.8934 5.8987 25 1 13.2058 -1.6296 5.4274 26 6 9.3261 -1.2002 2.1201 27 6 8.6423 0.1101 1.7302 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 0.2138 2.3194 0.0004 32 1 1.3304 4.5077 0.0019 33 1 3.7861 4.6499 0.0024 34 1 5.1447 2.6037 0.0114 35 1 7.2739 -0.8896 -0.3201 36 1 6.2886 -1.9164 0.8108 37 1 5.8101 1.6764 1.8993 38 1 6.9293 1.7066 0.4665 39 1 5.5195 -0.7392 3.0120 40 1 6.7944 0.1810 3.8475 41 1 6.9882 -2.6717 2.7757 42 1 7.0206 -2.1608 4.4831 43 1 12.1413 -3.1050 2.9312 44 1 10.3940 -1.0276 2.2534 45 1 9.1684 -1.9392 1.3346 46 1 8.9647 0.4083 0.7327 47 1 8.9100 0.8864 2.4470 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050737361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:55 Heat of formation + Delta-G solvation = 19.253054 kcal Electronic energy + Delta-G solvation = -28681.935740 eV Core-core repulsion = 24832.198843 eV Total energy + Delta-G solvation = -3849.736896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.91889 -40.07287 -37.98707 -37.40719 -35.76969 -32.56038 -31.66907 -30.47396 -30.37973 -29.64998 -27.67919 -26.93960 -26.17803 -24.33371 -23.33858 -22.34901 -22.18045 -20.82301 -19.67294 -18.19477 -17.92207 -17.16254 -16.53324 -16.37052 -16.02737 -15.62896 -15.32900 -15.03682 -14.86068 -14.60205 -13.99925 -13.85755 -13.61070 -13.48180 -13.37536 -12.97388 -12.76271 -12.69701 -12.37203 -12.24863 -11.84536 -11.79511 -11.61844 -11.39657 -11.37540 -11.33278 -10.98140 -10.75362 -10.44549 -10.25165 -10.11617 -9.83152 -9.74589 -9.59102 -9.31444 -9.23306 -8.54832 -8.45951 -8.35506 -6.57723 -5.76776 -3.25510 0.71300 1.13882 2.89094 2.97293 3.04425 3.37156 3.45075 3.46906 3.66856 4.33342 4.48890 4.49742 4.61068 4.70700 4.79778 4.89742 4.96288 5.04654 5.13274 5.24460 5.27491 5.29252 5.42298 5.45457 5.50364 5.59576 5.63937 5.70320 5.82444 5.98283 5.98634 6.07659 6.13001 6.15179 6.19859 6.32169 6.42248 6.50234 6.61319 6.67041 6.72105 6.86313 7.00783 7.14727 7.38315 7.71472 7.80935 7.91703 8.37990 8.50858 9.24901 9.86214 10.44248 11.30858 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025001 B = 0.002653 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.666506 B =10552.917289 C =10892.243789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.286 6.286 3 C 0.180 3.820 4 C -0.222 4.222 5 C -0.058 4.058 6 C -0.168 4.168 7 C -0.049 4.049 8 C -0.161 4.161 9 C 0.579 3.421 10 O -0.528 6.528 11 N -0.637 5.637 12 C 0.120 3.880 13 C -0.073 4.073 14 C 0.098 3.902 15 C -0.108 4.108 16 C 0.147 3.853 17 N -0.591 5.591 18 C -0.251 4.251 19 H 0.063 0.937 20 C 0.004 3.996 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.171 3.829 27 C -0.127 4.127 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.019 0.981 42 H 0.054 0.946 43 H 0.253 0.747 44 H 0.091 0.909 45 H 0.018 0.982 46 H 0.053 0.947 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.081 14.360 -7.070 24.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.197 6.197 3 C 0.132 3.868 4 C -0.241 4.241 5 C -0.076 4.076 6 C -0.187 4.187 7 C -0.068 4.068 8 C -0.165 4.165 9 C 0.369 3.631 10 O -0.405 6.405 11 N -0.372 5.372 12 C -0.001 4.001 13 C -0.074 4.074 14 C -0.025 4.025 15 C -0.147 4.147 16 C 0.020 3.980 17 N -0.314 5.314 18 C -0.381 4.381 19 H 0.081 0.919 20 C -0.195 4.195 21 N -0.549 5.549 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.045 3.955 27 C -0.167 4.167 28 H 0.120 0.880 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.151 0.849 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.155 0.845 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.109 0.891 45 H 0.036 0.964 46 H 0.071 0.929 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.306 13.485 -7.418 23.916 hybrid contribution 0.345 0.251 0.584 0.723 sum -17.961 13.736 -6.834 23.622 Atomic orbital electron populations 1.23148 0.78649 1.04343 1.01085 1.86337 1.20874 1.25653 1.86798 1.19053 0.90955 0.84862 0.91928 1.21218 1.00228 0.92068 1.10537 1.21095 0.94756 0.96987 0.94793 1.21007 0.93814 0.98488 1.05347 1.21411 1.00540 0.90624 0.94208 1.19367 0.90692 0.94341 1.12101 1.17626 0.80233 0.87761 0.77457 1.90803 1.70534 1.32346 1.46802 1.49955 1.10704 1.17382 1.59172 1.23261 0.84765 0.94825 0.97278 1.21981 0.96501 0.93751 0.95158 1.23539 0.90698 0.93516 0.94719 1.21755 0.98294 1.00415 0.94242 1.20893 0.85676 0.92708 0.98688 1.43973 1.00476 1.75476 1.11434 1.19216 0.94634 1.37562 0.86655 0.91894 1.25168 0.99321 0.98421 0.96553 1.69969 1.17847 1.46373 1.20681 0.86210 0.81076 0.77302 0.82107 1.20279 1.21691 1.21615 1.20697 0.98664 0.89204 0.86888 1.22076 0.92222 1.02346 1.00075 0.87956 0.92641 0.92609 0.84921 0.85429 0.85271 0.84532 0.89874 0.89936 0.90260 0.89829 0.92963 0.91832 0.96324 0.92697 0.93669 0.89069 0.96425 0.92868 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.29 -3.99 8.86 -38.89 -0.34 -4.34 16 3 C 0.18 2.36 6.67 -38.69 -0.26 2.10 16 4 C -0.22 -2.12 9.03 -39.47 -0.36 -2.48 16 5 C -0.06 -0.48 10.03 -39.54 -0.40 -0.87 16 6 C -0.17 -1.47 10.02 -39.63 -0.40 -1.87 16 7 C -0.05 -0.54 8.82 -39.20 -0.35 -0.88 16 8 C -0.16 -2.27 5.83 -104.85 -0.61 -2.88 16 9 C 0.58 9.90 7.77 -12.47 -0.10 9.80 16 10 O -0.53 -10.96 16.29 -14.98 -0.24 -11.21 16 11 N -0.64 -9.83 3.41 -181.48 -0.62 -10.45 16 12 C 0.12 1.96 7.63 -3.15 -0.02 1.93 16 13 C -0.07 -1.15 0.77 -154.42 -0.12 -1.27 16 14 C 0.10 1.25 5.39 -3.16 -0.02 1.23 16 15 C -0.11 -1.86 5.21 -26.73 -0.14 -2.00 16 16 C 0.15 3.07 6.38 -3.67 -0.02 3.05 16 17 N -0.59 -14.40 2.96 -172.51 -0.51 -14.91 16 18 C -0.25 -6.75 9.56 -15.06 -0.14 -6.90 16 19 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 20 C 0.00 0.10 5.05 -17.43 -0.09 0.02 16 21 N -0.90 -25.78 11.04 55.49 0.61 -25.16 16 22 Si 0.90 21.41 29.57 -169.99 -5.03 16.39 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 C 0.17 3.88 5.15 -3.90 -0.02 3.86 16 27 C -0.13 -2.20 5.24 -26.97 -0.14 -2.34 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 32 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.14 1.31 5.47 -52.49 -0.29 1.02 16 35 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 36 H 0.08 1.49 7.41 -51.93 -0.38 1.11 16 37 H 0.08 0.92 7.77 -51.93 -0.40 0.52 16 38 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 39 H 0.05 0.88 8.01 -51.93 -0.42 0.46 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.41 7.49 -51.93 -0.39 0.02 16 42 H 0.05 1.14 7.92 -51.93 -0.41 0.73 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.09 2.34 6.02 -51.93 -0.31 2.03 16 45 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 46 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -33.41 372.20 -9.76 -43.17 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -7.05 Total: -0.78 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -2.19 Total: 1.68 kcal Atomic # 7 Polarization: -50.01 SS G_CDS: -0.52 Total: -50.52 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.59 Total: -15.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.41 -9.76 -43.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050737361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.422 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds