Wall clock time and date at job start Tue Mar 31 2020 16:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35644 * 117.00004 * 2 1 4 4 C 1.38718 * 120.15113 * 0.02562 * 3 2 1 5 5 C 1.38049 * 120.08185 * 179.97438 * 4 3 2 6 6 C 1.38546 * 120.39311 * 359.97438 * 5 4 3 7 7 C 1.37787 * 120.30001 * 359.76603 * 6 5 4 8 8 C 1.39702 * 119.90938 * 0.51113 * 7 6 5 9 9 C 1.47526 * 120.19458 * 179.74412 * 8 7 6 10 10 O 1.21593 * 120.00277 * 204.04436 * 9 8 7 11 11 N 1.34789 * 120.00154 * 24.04655 * 9 8 7 12 12 C 1.47662 * 134.45936 * 185.15992 * 11 9 8 13 13 C 1.53510 * 85.97807 * 204.33027 * 12 11 9 14 14 C 1.47661 * 134.45187 * 5.18010 * 11 9 8 15 15 C 1.52667 * 113.57102 * 91.01651 * 13 12 11 16 16 C 1.53329 * 109.11376 * 73.81467 * 15 13 12 17 17 N 1.46879 * 108.76745 * 52.40487 * 16 15 13 18 18 C 1.36936 * 120.47140 * 124.47044 * 17 16 15 19 19 H 1.07998 * 119.99625 * 327.89472 * 18 17 16 20 20 C 1.38804 * 120.00199 * 148.16728 * 18 17 16 21 21 N 1.31616 * 120.00094 * 349.65546 * 20 18 17 22 22 Si 1.86798 * 120.00148 * 169.64432 * 20 18 17 23 23 H 1.48506 * 109.47107 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47023 * 120.00079 * 22 20 18 25 25 H 1.48494 * 109.47536 * 240.00493 * 22 20 18 26 26 C 1.46891 * 119.06449 * 304.74685 * 17 16 15 27 27 C 1.52673 * 113.56103 * 222.23247 * 13 12 11 28 28 H 1.09003 * 109.46747 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46827 * 300.00407 * 1 2 3 30 30 H 1.08993 * 109.46962 * 60.00433 * 1 2 3 31 31 H 1.07998 * 119.95363 * 359.96485 * 4 3 2 32 32 H 1.08000 * 119.80291 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.84743 * 180.02562 * 6 5 4 34 34 H 1.08002 * 120.04316 * 180.27858 * 7 6 5 35 35 H 1.09003 * 113.79146 * 90.06333 * 12 11 9 36 36 H 1.09003 * 113.89826 * 318.61207 * 12 11 9 37 37 H 1.08997 * 113.79425 * 41.39978 * 14 11 9 38 38 H 1.08998 * 113.79534 * 269.93405 * 14 11 9 39 39 H 1.09001 * 109.53025 * 313.92280 * 15 13 12 40 40 H 1.08997 * 109.59085 * 193.74529 * 15 13 12 41 41 H 1.09003 * 109.59126 * 292.61566 * 16 15 13 42 42 H 1.09006 * 109.58884 * 172.19009 * 16 15 13 43 43 H 0.96999 * 120.00597 * 180.02562 * 21 20 18 44 44 H 1.08995 * 109.58835 * 175.03344 * 26 17 16 45 45 H 1.08996 * 109.58791 * 295.47394 * 26 17 16 46 46 H 1.08990 * 109.52981 * 46.08187 * 27 13 12 47 47 H 1.09001 * 109.52410 * 166.22496 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2924 2.3740 0.0005 5 6 1.9207 3.6032 0.0011 6 6 3.3038 3.6836 0.0016 7 6 4.0668 2.5362 0.0065 8 6 3.4442 1.2856 0.0001 9 6 4.2550 0.0532 -0.0005 10 8 3.7875 -0.9820 -0.4346 11 7 5.5140 0.0745 0.4804 12 6 6.6128 -0.9098 0.5463 13 6 7.1291 -0.0921 1.7385 14 6 6.3471 1.0915 1.1526 15 6 6.5941 -0.5720 3.0854 16 6 7.2921 -1.8835 3.4645 17 7 8.7452 -1.6874 3.3783 18 6 9.5466 -1.9496 4.4573 19 1 9.1717 -1.7956 5.4583 20 6 10.8424 -2.4080 4.2643 21 7 11.2358 -2.7843 3.0660 22 14 12.0283 -2.4906 5.7053 23 1 11.3461 -2.0148 6.9356 24 1 12.4753 -3.8934 5.8987 25 1 13.2058 -1.6296 5.4274 26 6 9.3261 -1.2002 2.1201 27 6 8.6423 0.1101 1.7302 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 0.2138 2.3194 0.0004 32 1 1.3304 4.5077 0.0019 33 1 3.7861 4.6499 0.0024 34 1 5.1447 2.6037 0.0114 35 1 7.2739 -0.8896 -0.3201 36 1 6.2886 -1.9164 0.8108 37 1 5.8101 1.6764 1.8993 38 1 6.9293 1.7066 0.4665 39 1 5.5195 -0.7392 3.0120 40 1 6.7944 0.1810 3.8475 41 1 6.9882 -2.6717 2.7757 42 1 7.0206 -2.1608 4.4831 43 1 12.1413 -3.1050 2.9312 44 1 10.3940 -1.0276 2.2534 45 1 9.1684 -1.9392 1.3346 46 1 8.9647 0.4083 0.7327 47 1 8.9100 0.8864 2.4470 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050737361.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:54 Heat of formation + Delta-G solvation = -0.414716 kcal Electronic energy + Delta-G solvation = -28682.788598 eV Core-core repulsion = 24832.198843 eV Total energy + Delta-G solvation = -3850.589755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.04548 -41.05667 -39.24280 -38.25226 -37.44839 -34.28610 -32.78564 -31.96490 -31.28888 -31.10709 -28.71853 -28.10479 -27.33258 -26.03115 -24.37684 -23.90711 -22.96694 -22.46548 -20.76717 -19.62724 -18.90984 -18.46481 -17.89091 -17.47820 -16.97778 -16.84853 -16.58499 -16.47937 -15.77936 -15.65236 -15.41147 -15.35962 -14.98189 -14.85763 -14.48502 -14.41088 -13.93094 -13.84480 -13.55489 -13.28774 -13.09419 -13.04787 -12.93343 -12.87169 -12.60743 -12.54708 -12.25667 -12.08214 -12.05500 -11.96533 -11.82076 -11.33622 -11.29599 -11.20107 -10.69083 -10.48083 -10.07839 -9.68997 -9.22319 -8.56946 -7.83123 -5.35410 -0.09632 0.41196 1.48013 1.49792 1.60041 1.80288 1.84775 2.33351 2.52888 2.81814 3.27588 3.36568 3.44953 3.71760 3.80220 3.88684 3.96095 4.07130 4.21869 4.25156 4.32720 4.34451 4.36801 4.45216 4.48110 4.53740 4.57413 4.61857 4.67636 4.72771 4.74249 4.82092 4.94845 4.98059 5.04254 5.16515 5.19219 5.23698 5.33888 5.36500 5.37216 5.47447 5.58426 5.68692 5.77980 5.86285 6.40199 6.46199 6.72744 7.15088 7.20587 7.89734 8.42276 9.21869 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.025001 B = 0.002653 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.666506 B =10552.917289 C =10892.243789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.328 6.328 3 C 0.155 3.845 4 C -0.221 4.221 5 C -0.047 4.047 6 C -0.163 4.163 7 C -0.051 4.051 8 C -0.197 4.197 9 C 0.572 3.428 10 O -0.583 6.583 11 N -0.637 5.637 12 C 0.114 3.886 13 C -0.073 4.073 14 C 0.117 3.883 15 C -0.093 4.093 16 C 0.144 3.856 17 N -0.608 5.608 18 C -0.261 4.261 19 H 0.063 0.937 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.968 3.032 23 H -0.267 1.267 24 H -0.295 1.295 25 H -0.287 1.287 26 C 0.176 3.824 27 C -0.110 4.110 28 H 0.106 0.894 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.157 0.843 32 H 0.166 0.834 33 H 0.163 0.837 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.002 0.998 42 H 0.050 0.950 43 H 0.250 0.750 44 H 0.058 0.942 45 H -0.008 1.008 46 H 0.081 0.919 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.355 18.608 -6.803 27.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.240 6.240 3 C 0.108 3.892 4 C -0.239 4.239 5 C -0.065 4.065 6 C -0.181 4.181 7 C -0.069 4.069 8 C -0.201 4.201 9 C 0.364 3.636 10 O -0.464 6.464 11 N -0.371 5.371 12 C -0.009 4.009 13 C -0.074 4.074 14 C -0.004 4.004 15 C -0.132 4.132 16 C 0.019 3.981 17 N -0.331 5.331 18 C -0.391 4.391 19 H 0.081 0.919 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.214 1.214 26 C 0.051 3.949 27 C -0.150 4.150 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.175 0.825 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.166 0.834 35 H 0.112 0.888 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.020 0.980 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.010 0.990 46 H 0.100 0.900 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.594 17.777 -7.134 27.402 hybrid contribution 0.653 -1.099 0.493 1.370 sum -18.941 16.678 -6.641 26.096 Atomic orbital electron populations 1.23398 0.76473 1.05282 1.02738 1.86277 1.23434 1.27101 1.87207 1.19412 0.91123 0.85678 0.93002 1.21538 1.01381 0.91399 1.09614 1.21613 0.95075 0.97687 0.92146 1.21431 0.94120 0.98987 1.03531 1.21583 1.01361 0.90023 0.93979 1.19365 0.91102 0.93953 1.15646 1.18264 0.80469 0.88371 0.76459 1.90753 1.71684 1.34599 1.49401 1.49997 1.10398 1.17826 1.58851 1.23242 0.85648 0.93892 0.98101 1.21873 0.95789 0.95719 0.94030 1.23635 0.89509 0.92152 0.95126 1.21548 0.97912 0.98291 0.95487 1.20960 0.84428 0.94587 0.98146 1.44231 1.01549 1.75996 1.11359 1.19516 0.95182 1.36952 0.87466 0.91938 1.25902 1.00933 0.98629 0.98896 1.70140 1.17895 1.47565 1.22518 0.85197 0.78885 0.76730 0.79566 1.19121 1.22247 1.21374 1.20529 0.97417 0.91346 0.85628 1.21842 0.92508 0.98957 1.01660 0.87593 0.90842 0.90907 0.82533 0.81645 0.81965 0.83369 0.88825 0.92971 0.88198 0.86317 0.92576 0.90867 0.97979 0.93145 0.94115 0.92322 0.98954 0.90016 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -9.39 8.86 -70.21 -0.62 -10.01 16 3 C 0.16 3.95 6.67 22.85 0.15 4.10 16 4 C -0.22 -3.57 9.03 22.34 0.20 -3.37 16 5 C -0.05 -0.55 10.03 22.30 0.22 -0.33 16 6 C -0.16 -2.07 10.02 22.24 0.22 -1.84 16 7 C -0.05 -0.95 8.82 22.52 0.20 -0.75 16 8 C -0.20 -5.36 5.83 -20.01 -0.12 -5.48 16 9 C 0.57 19.89 7.77 86.69 0.67 20.56 16 10 O -0.58 -25.66 16.29 15.37 0.25 -25.41 16 11 N -0.64 -19.26 3.41 -846.33 -2.89 -22.14 16 12 C 0.11 3.74 7.63 86.32 0.66 4.40 16 13 C -0.07 -2.21 0.77 -52.03 -0.04 -2.25 16 14 C 0.12 2.60 5.39 86.31 0.47 3.07 16 15 C -0.09 -3.17 5.21 30.59 0.16 -3.01 16 16 C 0.14 6.22 6.38 86.42 0.55 6.77 16 17 N -0.61 -30.37 2.96 -699.70 -2.07 -32.44 16 18 C -0.26 -14.29 9.56 84.03 0.80 -13.49 16 19 H 0.06 3.36 7.85 -2.91 -0.02 3.34 16 20 C -0.05 -2.68 5.05 84.86 0.43 -2.25 16 21 N -0.94 -55.01 11.04 21.65 0.24 -54.78 16 22 Si 0.97 44.63 29.57 68.60 2.03 46.66 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 26 C 0.18 8.18 5.15 86.26 0.44 8.62 16 27 C -0.11 -3.65 5.24 30.44 0.16 -3.49 16 28 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 30 H 0.07 0.87 7.66 -2.39 -0.02 0.86 16 31 H 0.16 1.64 6.30 -2.91 -0.02 1.62 16 32 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 34 H 0.15 2.25 5.47 -2.91 -0.02 2.23 16 35 H 0.09 2.86 8.07 -2.39 -0.02 2.84 16 36 H 0.05 2.02 7.41 -2.39 -0.02 2.00 16 37 H 0.10 1.90 7.77 -2.39 -0.02 1.88 16 38 H 0.12 1.91 7.70 -2.39 -0.02 1.89 16 39 H 0.06 1.87 8.01 -2.39 -0.02 1.85 16 40 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 41 H 0.00 0.10 7.49 -2.39 -0.02 0.09 16 42 H 0.05 2.16 7.92 -2.38 -0.02 2.14 16 43 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 44 H 0.06 3.11 6.02 -2.39 -0.01 3.09 16 45 H -0.01 -0.39 8.07 -2.39 -0.02 -0.41 16 46 H 0.08 2.26 8.12 -2.39 -0.02 2.24 16 47 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -78.45 372.20 4.20 -74.25 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.97 Total: 11.23 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 6.30 Total: 12.64 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.72 Total: -109.36 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -0.37 Total: -35.42 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -78.45 4.20 -74.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050737361.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.834 kcal (2) G-P(sol) polarization free energy of solvation -78.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds