Wall clock time and date at job start Tue Mar 31 2020 16:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.50737 * 2 1 4 4 C 1.53100 * 109.50507 * 239.91576 * 2 1 3 5 5 N 1.47017 * 109.25486 * 183.17229 * 4 2 1 6 6 C 1.46905 * 110.99833 * 182.39035 * 5 4 2 7 7 C 1.52998 * 109.46725 * 58.62591 * 6 5 4 8 8 C 1.52997 * 109.47154 * 298.62491 * 6 5 4 9 9 C 1.52999 * 109.46975 * 178.62186 * 6 5 4 10 10 N 1.46502 * 109.47367 * 305.41405 * 9 6 5 11 11 C 1.34777 * 119.99826 * 185.03311 * 10 9 6 12 12 O 1.21278 * 119.99864 * 359.97438 * 11 10 9 13 13 C 1.50697 * 119.99825 * 179.97438 * 11 10 9 14 14 S 1.81001 * 109.47357 * 179.97438 * 13 11 10 15 15 C 1.76198 * 100.00262 * 179.97438 * 14 13 11 16 16 H 1.08004 * 119.99870 * 0.02562 * 15 14 13 17 17 C 1.38796 * 119.99847 * 179.97438 * 15 14 13 18 18 N 1.31633 * 120.00480 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99902 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46726 * 60.00403 * 19 17 15 21 21 H 1.48500 * 109.47236 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.46954 * 300.00677 * 19 17 15 23 23 C 1.47018 * 110.75261 * 58.61841 * 5 4 2 24 24 C 1.53092 * 109.25805 * 301.38287 * 23 5 4 25 25 H 1.08993 * 109.50939 * 176.78378 * 24 23 5 26 26 C 1.52997 * 109.54367 * 296.89097 * 24 23 5 27 27 O 1.43014 * 109.54031 * 120.11329 * 2 1 3 28 28 H 1.08997 * 109.47030 * 180.08104 * 1 2 3 29 29 H 1.08993 * 109.47177 * 300.08647 * 1 2 3 30 30 H 1.09005 * 109.47125 * 60.08218 * 1 2 3 31 31 H 1.09007 * 109.50546 * 63.24539 * 4 2 1 32 32 H 1.08992 * 109.54744 * 303.13225 * 4 2 1 33 33 H 1.09007 * 109.46928 * 179.97438 * 7 6 5 34 34 H 1.08997 * 109.47661 * 299.99917 * 7 6 5 35 35 H 1.09004 * 109.47445 * 60.00034 * 7 6 5 36 36 H 1.08996 * 109.47296 * 299.99870 * 8 6 5 37 37 H 1.09001 * 109.47295 * 60.00417 * 8 6 5 38 38 H 1.09008 * 109.46640 * 179.97438 * 8 6 5 39 39 H 1.09002 * 109.46982 * 185.41281 * 9 6 5 40 40 H 1.08998 * 109.46943 * 65.41711 * 9 6 5 41 41 H 0.97001 * 119.99987 * 5.03251 * 10 9 6 42 42 H 1.09007 * 109.46906 * 59.99914 * 13 11 10 43 43 H 1.08996 * 109.47555 * 300.00139 * 13 11 10 44 44 H 0.96996 * 120.00331 * 179.97438 * 18 17 15 45 45 H 1.09009 * 109.50564 * 61.31523 * 23 5 4 46 46 H 1.08998 * 109.50525 * 181.44454 * 23 5 4 47 47 H 1.08998 * 109.47696 * 179.80057 * 26 24 23 48 48 H 1.08998 * 109.47285 * 299.80921 * 26 24 23 49 49 H 1.09012 * 109.47336 * 59.80254 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 -1.2487 5 7 3.5093 -0.7870 -1.2053 6 6 4.0447 -1.4250 -2.4155 7 6 3.5961 -0.6373 -3.6481 8 6 3.5222 -2.8599 -2.5092 9 6 5.5731 -1.4419 -2.3495 10 7 6.0676 -0.0804 -2.1300 11 6 7.3929 0.1647 -2.1387 12 8 8.1760 -0.7418 -2.3278 13 6 7.9015 1.5653 -1.9136 14 16 9.7102 1.5688 -1.9826 15 6 10.0241 3.2788 -1.6966 16 1 9.2006 3.9611 -1.5456 17 6 11.3296 3.7488 -1.6644 18 7 12.3333 2.9172 -1.8480 19 14 11.6624 5.5617 -1.3605 20 1 11.1079 5.9520 -0.0394 21 1 13.1273 5.8053 -1.3746 22 1 11.0166 6.3690 -2.4265 23 6 3.9649 -1.4869 0.0047 24 6 3.4344 -0.7560 1.2408 25 1 3.7216 -1.3032 2.1385 26 6 4.0229 0.6553 1.2927 27 8 2.0083 -0.6762 1.1659 28 1 -0.3633 -1.0276 0.0015 29 1 -0.3633 0.5151 0.8891 30 1 -0.3634 0.5126 -0.8908 31 1 1.7267 -0.1789 -2.1392 32 1 1.6338 -1.7339 -1.2772 33 1 3.9937 -1.1104 -4.5460 34 1 2.5072 -0.6251 -3.6951 35 1 3.9683 0.3850 -3.5813 36 1 3.8418 -3.4210 -1.6311 37 1 2.4333 -2.8478 -2.5563 38 1 3.9191 -3.3331 -3.4075 39 1 5.9730 -1.8269 -3.2875 40 1 5.8942 -2.0820 -1.5277 41 1 5.4412 0.6445 -1.9785 42 1 7.5749 1.9175 -0.9350 43 1 7.5068 2.2240 -2.6871 44 1 13.2457 3.2458 -1.8258 45 1 3.5881 -2.5098 -0.0029 46 1 5.0545 -1.4999 0.0292 47 1 3.6418 1.1760 2.1712 48 1 5.1097 0.5939 1.3497 49 1 3.7366 1.2017 0.3939 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041791939.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:19 Heat of formation + Delta-G solvation = -80.022212 kcal Electronic energy + Delta-G solvation = -27601.768490 eV Core-core repulsion = 23883.170646 eV Total energy + Delta-G solvation = -3718.597844 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.86578 -39.08833 -37.68040 -34.05818 -33.66841 -32.40662 -32.27784 -29.95575 -29.42287 -28.22256 -26.89174 -25.79887 -25.37736 -24.68390 -22.79072 -20.25247 -20.09199 -19.16515 -17.80463 -16.97743 -16.80246 -16.23685 -15.75263 -15.50656 -15.27550 -15.11463 -14.78524 -14.77299 -14.50472 -13.97985 -13.89200 -13.45243 -13.28291 -12.92368 -12.87453 -12.82280 -12.56398 -12.51552 -12.33487 -12.20934 -11.99810 -11.86416 -11.79955 -11.55695 -11.49656 -11.18470 -11.02184 -11.01957 -10.84078 -10.73217 -10.47476 -9.81139 -9.78544 -9.33640 -9.03897 -8.76440 -8.60953 -8.20287 -6.46754 -6.19177 -3.89331 3.07518 3.17852 3.25048 3.28286 3.30659 3.40160 3.50670 3.84177 4.23139 4.30872 4.46327 4.53842 4.67941 4.75435 4.77553 4.81723 4.90681 5.09162 5.10827 5.15780 5.17848 5.22906 5.24411 5.29126 5.34762 5.44035 5.45934 5.50649 5.55750 5.61312 5.63371 5.64877 5.74414 5.76250 5.82689 5.84474 5.92804 5.94861 5.99989 6.16169 6.19862 6.62065 6.67141 6.80132 6.99120 7.61658 7.87345 8.37501 8.71616 9.26024 10.88184 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.002809 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.480516 B = 9965.572932 C =10844.186315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.070 0.930 4 C 0.020 3.980 5 N -0.520 5.520 6 C 0.095 3.905 7 C -0.141 4.141 8 C -0.179 4.179 9 C 0.136 3.864 10 N -0.725 5.725 11 C 0.530 3.470 12 O -0.523 6.523 13 C -0.151 4.151 14 S -0.061 6.061 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.017 3.983 24 C 0.092 3.908 25 H 0.103 0.897 26 C -0.176 4.176 27 O -0.379 6.379 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.404 0.596 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.269 0.731 45 H 0.045 0.955 46 H 0.093 0.907 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.774 -8.227 1.595 27.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.028 3.972 3 H 0.088 0.912 4 C -0.108 4.108 5 N -0.245 5.245 6 C 0.005 3.995 7 C -0.198 4.198 8 C -0.238 4.238 9 C 0.011 3.989 10 N -0.381 5.381 11 C 0.316 3.684 12 O -0.398 6.398 13 C -0.302 4.302 14 S 0.166 5.834 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.744 3.256 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.111 4.111 24 C 0.034 3.966 25 H 0.121 0.879 26 C -0.233 4.233 27 O -0.299 6.299 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.240 0.760 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.111 0.889 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.201 -9.360 1.421 25.987 hybrid contribution -1.065 1.740 0.256 2.056 sum -25.267 -7.620 1.678 26.444 Atomic orbital electron populations 1.21742 0.93089 1.02757 1.02606 1.22141 0.94457 0.96188 0.84425 0.91213 1.22911 0.88075 1.00379 0.99467 1.62379 1.08597 1.52084 1.01424 1.21354 0.94292 0.93023 0.90823 1.21911 1.01076 1.01000 0.95850 1.22407 1.01620 0.96778 1.02988 1.21285 0.90718 0.85094 1.01815 1.45854 1.07086 1.10097 1.75028 1.20294 0.81626 0.90724 0.75784 1.90695 1.55415 1.46272 1.47451 1.23504 1.06582 0.95528 1.04572 1.85376 0.91778 1.12196 1.94077 1.22832 0.95066 0.93592 1.56838 0.91021 1.24985 0.95071 0.98821 0.94690 1.70008 0.99180 1.34816 1.46366 0.86237 0.77329 0.83093 0.78921 1.19941 1.20842 1.19954 1.22901 1.01909 0.96091 0.90162 1.22243 0.80406 0.96697 0.97209 0.87913 1.22285 1.01799 0.96627 1.02627 1.88030 1.20999 1.78067 1.42766 0.92066 0.91615 0.91047 0.89401 0.93645 0.91679 0.92330 0.91358 0.92020 0.91912 0.91402 0.90965 0.92004 0.76015 0.89368 0.89415 0.92166 0.93660 0.88899 0.92472 0.91295 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 9.57 37.16 0.36 -0.56 16 2 C 0.09 0.69 3.03 -26.68 -0.08 0.61 16 3 H 0.07 0.59 6.49 -51.93 -0.34 0.25 16 4 C 0.02 0.15 4.16 -3.71 -0.02 0.13 16 5 N -0.52 -4.33 3.27 -218.65 -0.71 -5.04 16 6 C 0.09 0.79 0.37 -131.60 -0.05 0.75 16 7 C -0.14 -1.08 8.08 37.16 0.30 -0.78 16 8 C -0.18 -1.33 7.78 37.16 0.29 -1.04 16 9 C 0.14 1.56 3.95 -4.04 -0.02 1.54 16 10 N -0.73 -9.63 5.08 -60.30 -0.31 -9.94 16 11 C 0.53 9.83 7.85 -10.99 -0.09 9.75 16 12 O -0.52 -11.86 15.86 5.56 0.09 -11.77 16 13 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 14 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 15 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 16 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 19 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 23 C 0.02 0.16 4.29 -3.71 -0.02 0.14 16 24 C 0.09 0.85 3.92 -26.69 -0.10 0.75 16 25 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 26 C -0.18 -1.67 8.89 37.16 0.33 -1.34 16 27 O -0.38 -3.82 10.29 -35.23 -0.36 -4.18 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.57 6.15 -51.93 -0.32 0.25 16 32 H 0.05 0.35 6.47 -51.93 -0.34 0.02 16 33 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.06 0.38 6.33 -51.93 -0.33 0.05 16 35 H 0.07 0.58 7.32 -51.93 -0.38 0.20 16 36 H 0.06 0.49 6.51 -51.93 -0.34 0.15 16 37 H 0.06 0.43 6.49 -51.93 -0.34 0.09 16 38 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.06 0.76 6.63 -51.93 -0.34 0.42 16 41 H 0.40 4.66 7.43 -40.82 -0.30 4.36 16 42 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 45 H 0.05 0.41 6.49 -51.92 -0.34 0.08 16 46 H 0.09 0.96 6.26 -51.93 -0.33 0.63 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.70 6.13 -51.92 -0.32 0.38 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -33.48 386.54 -8.84 -42.32 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.20 Total: 1.67 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 1.33 Total: -5.90 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: -0.29 Total: -40.55 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.27 Total: -15.95 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.48 -8.84 -42.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041791939.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.700 kcal (2) G-P(sol) polarization free energy of solvation -33.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds