Wall clock time and date at job start Tue Mar 31 2020 17:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81401 * 103.00098 * 2 1 4 4 C 1.52995 * 109.47333 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.47636 * 55.00016 * 4 3 2 6 6 C 1.53004 * 109.47007 * 294.99689 * 4 3 2 7 7 C 1.50703 * 109.47222 * 175.00013 * 4 3 2 8 8 O 1.21281 * 120.00086 * 17.54445 * 7 4 3 9 9 N 1.34777 * 119.99885 * 197.54738 * 7 4 3 10 10 C 1.46499 * 120.00071 * 4.81056 * 9 7 4 11 11 C 1.50707 * 109.46934 * 84.45129 * 10 9 7 12 12 H 1.07995 * 119.99948 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99489 * 179.97438 * 11 10 9 14 14 N 1.31509 * 120.00701 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99671 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47383 * 60.00135 * 15 13 11 17 17 H 1.48503 * 109.47420 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47281 * 300.00540 * 15 13 11 19 19 C 1.46502 * 119.99810 * 184.80994 * 9 7 4 20 20 C 1.53001 * 109.47201 * 90.00109 * 19 9 7 21 21 N 1.46900 * 109.47248 * 179.97438 * 20 19 9 22 22 C 1.47009 * 111.00127 * 293.63774 * 21 20 19 23 23 C 1.53103 * 109.25988 * 177.60771 * 22 21 20 24 24 O 1.43015 * 109.25504 * 56.84304 * 23 22 21 25 25 C 1.43006 * 113.74267 * 301.33431 * 24 23 22 26 26 C 1.47013 * 111.00209 * 169.99984 * 21 20 19 27 27 H 1.08997 * 109.47257 * 60.00089 * 1 2 3 28 28 H 1.08997 * 109.46559 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46774 * 300.00175 * 1 2 3 30 30 H 1.08997 * 109.47186 * 59.99734 * 3 2 1 31 31 H 1.08998 * 109.47121 * 300.00097 * 3 2 1 32 32 H 1.08999 * 109.47359 * 296.12533 * 6 4 3 33 33 H 1.09002 * 109.46835 * 176.12853 * 6 4 3 34 34 H 1.08996 * 109.47119 * 56.12553 * 6 4 3 35 35 H 1.08996 * 109.47027 * 204.44743 * 10 9 7 36 36 H 1.08992 * 109.47263 * 324.45243 * 10 9 7 37 37 H 0.96993 * 120.00481 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.47024 * 210.00112 * 19 9 7 39 39 H 1.08998 * 109.47089 * 329.99813 * 19 9 7 40 40 H 1.08999 * 109.47134 * 299.99935 * 20 19 9 41 41 H 1.09001 * 109.46834 * 59.99912 * 20 19 9 42 42 H 1.09002 * 109.50676 * 297.53904 * 22 21 20 43 43 H 1.08997 * 109.50897 * 57.66947 * 22 21 20 44 44 H 1.09000 * 109.50179 * 296.91236 * 23 22 21 45 45 H 1.08997 * 109.54009 * 176.80788 * 23 22 21 46 46 H 1.09000 * 109.50516 * 298.73459 * 25 24 23 47 47 H 1.09002 * 109.54196 * 178.63256 * 25 24 23 48 48 H 1.09005 * 109.50209 * 302.33238 * 26 21 20 49 49 H 1.09000 * 109.50591 * 62.40967 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.1695 1.3954 -0.8426 6 6 4.3183 1.3916 1.3065 7 6 4.0819 3.4030 -0.1245 8 8 3.2399 4.2431 0.1125 9 7 5.3212 3.7778 -0.4986 10 6 6.3068 2.7657 -0.8865 11 6 6.1188 2.4125 -2.3395 12 1 5.3425 2.8935 -2.9161 13 6 6.9378 1.4753 -2.9326 14 7 7.8827 0.8892 -2.2304 15 14 6.7043 1.0369 -4.7334 16 1 6.8879 2.2523 -5.5666 17 1 7.7034 0.0110 -5.1267 18 1 5.3356 0.4984 -4.9384 19 6 5.6828 5.1974 -0.5173 20 6 6.2508 5.5970 0.8460 21 7 6.6139 7.0203 0.8271 22 6 7.7314 7.2667 -0.0958 23 6 8.0371 8.7665 -0.1297 24 8 8.3201 9.2202 1.1967 25 6 7.2528 8.9965 2.1218 26 6 6.9392 7.4991 2.1785 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8032 2.2371 0.8899 31 1 1.8032 2.2371 -0.8900 32 1 3.9444 1.9808 2.1438 33 1 5.4063 1.4515 1.2774 34 1 4.0147 0.3521 1.4295 35 1 7.3115 3.1604 -0.7357 36 1 6.1713 1.8735 -0.2753 37 1 8.4587 0.2296 -2.6476 38 1 6.4332 5.3711 -1.2886 39 1 4.7969 5.7952 -0.7312 40 1 5.5004 5.4234 1.6173 41 1 7.1368 4.9992 1.0599 42 1 8.6123 6.7234 0.2460 43 1 7.4593 6.9281 -1.0955 44 1 7.1745 9.3049 -0.5222 45 1 8.9011 8.9481 -0.7688 46 1 6.3674 9.5416 1.7948 47 1 7.5492 9.3440 3.1115 48 1 6.0887 7.3300 2.8390 49 1 7.8069 6.9589 2.5570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066833579.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:36 Heat of formation + Delta-G solvation = -83.410273 kcal Electronic energy + Delta-G solvation = -27343.037073 eV Core-core repulsion = 23624.292312 eV Total energy + Delta-G solvation = -3718.744761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.75707 -39.24492 -36.24334 -34.85626 -34.04892 -32.63088 -31.26238 -29.80976 -28.98373 -27.29409 -26.90232 -26.03767 -24.06443 -23.46024 -22.77117 -21.19313 -20.31648 -18.12525 -17.02116 -16.56873 -16.46629 -16.17619 -15.66116 -15.50252 -15.16286 -15.05127 -14.90051 -14.53834 -14.38542 -14.23861 -13.69227 -13.59806 -13.31630 -13.18133 -12.82240 -12.54748 -12.34576 -12.27480 -12.08260 -11.82625 -11.76349 -11.48166 -11.44708 -11.35374 -11.00931 -10.95785 -10.76418 -10.69350 -10.64836 -10.41689 -10.12336 -9.85517 -9.76792 -9.69360 -9.01786 -8.58181 -8.38185 -7.79315 -7.47122 -6.21852 -4.29643 1.82048 2.76775 3.23770 3.27935 3.28785 3.33595 3.56773 3.79988 4.15381 4.32493 4.82148 4.96279 4.98597 5.06808 5.09169 5.11245 5.16310 5.19194 5.22521 5.25033 5.28681 5.44695 5.50664 5.52817 5.60306 5.70028 5.73038 5.79435 5.80086 5.89852 5.91505 5.93639 5.99461 6.19934 6.24446 6.38883 6.49724 6.56692 6.67934 6.95588 7.01102 7.07349 7.15976 7.47784 7.72868 8.01112 8.24308 8.74170 8.93852 9.38824 10.84775 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009296 B = 0.003799 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.418672 B = 7368.523602 C = 9705.519585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.258 6.258 3 C -0.057 4.057 4 C -0.096 4.096 5 H 0.123 0.877 6 C -0.140 4.140 7 C 0.530 3.470 8 O -0.573 6.573 9 N -0.593 5.593 10 C 0.234 3.766 11 C -0.541 4.541 12 H 0.060 0.940 13 C 0.069 3.931 14 N -0.889 5.889 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.124 3.876 20 C 0.045 3.955 21 N -0.533 5.533 22 C 0.012 3.988 23 C 0.065 3.935 24 O -0.389 6.389 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.266 0.734 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.084 0.916 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.845 7.029 7.408 11.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.033 6.033 3 C -0.206 4.206 4 C -0.118 4.118 5 H 0.141 0.859 6 C -0.198 4.198 7 C 0.317 3.683 8 O -0.455 6.455 9 N -0.323 5.323 10 C 0.114 3.886 11 C -0.580 4.580 12 H 0.078 0.922 13 C -0.135 4.135 14 N -0.527 5.527 15 Si 0.722 3.278 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.199 1.199 19 C 0.000 4.000 20 C -0.084 4.084 21 N -0.259 5.259 22 C -0.116 4.116 23 C -0.012 4.012 24 O -0.307 6.307 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.077 0.923 45 H 0.115 0.885 46 H 0.077 0.923 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.671 6.783 7.391 11.066 hybrid contribution -0.333 -0.022 -0.902 0.962 sum -5.004 6.761 6.489 10.624 Atomic orbital electron populations 1.23356 0.95301 1.05995 1.04678 1.86896 1.06078 1.12272 1.98015 1.23198 0.99099 0.92771 1.05512 1.21021 0.93284 0.94864 1.02647 0.85925 1.21802 1.01800 1.01460 0.94720 1.20263 0.81884 0.90259 0.75920 1.90591 1.48260 1.53816 1.52793 1.48143 1.12899 1.07199 1.64025 1.19566 0.86880 0.86332 0.95826 1.21432 1.17574 1.23536 0.95442 0.92152 1.24911 0.94706 0.95545 0.98345 1.69895 1.19127 1.27077 1.36628 0.86593 0.78252 0.78264 0.84654 1.20171 1.21096 1.19869 1.21181 1.00847 0.82583 0.95368 1.22508 0.99725 0.86292 0.99849 1.62135 1.37451 1.18487 1.07834 1.22881 0.92853 0.97160 0.98716 1.22682 1.01434 0.93056 0.84060 1.87955 1.40822 1.82272 1.19700 1.22638 0.90653 0.94352 0.93540 1.22760 1.00685 0.96516 0.91045 0.90714 0.88420 0.90791 0.89745 0.89941 0.92966 0.91152 0.90897 0.94801 0.93756 0.92392 0.90580 0.90042 0.90685 0.94347 0.93733 0.88891 0.92258 0.88478 0.92302 0.88691 0.89729 0.94029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 10.76 101.05 1.09 -0.27 16 2 S -0.26 -3.87 21.13 -107.50 -2.27 -6.14 16 3 C -0.06 -0.93 4.73 37.15 0.18 -0.76 16 4 C -0.10 -1.76 1.88 -91.77 -0.17 -1.93 16 5 H 0.12 2.55 6.65 -51.93 -0.35 2.21 16 6 C -0.14 -2.29 8.84 37.16 0.33 -1.96 16 7 C 0.53 10.70 6.80 -10.98 -0.07 10.63 16 8 O -0.57 -12.46 15.66 5.56 0.09 -12.37 16 9 N -0.59 -11.98 2.47 -175.06 -0.43 -12.42 16 10 C 0.23 5.31 4.81 -5.19 -0.02 5.29 16 11 C -0.54 -13.69 8.63 -34.44 -0.30 -13.99 16 12 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 13 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 14 N -0.89 -23.97 13.29 55.43 0.74 -23.23 16 15 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 C 0.12 2.24 5.36 -4.04 -0.02 2.22 16 20 C 0.04 0.71 5.28 -3.82 -0.02 0.69 16 21 N -0.53 -7.47 4.73 -234.31 -1.11 -8.57 16 22 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 23 C 0.06 0.74 7.01 37.21 0.26 1.00 16 24 O -0.39 -4.93 10.83 -35.23 -0.38 -5.31 16 25 C 0.07 0.70 7.01 37.20 0.26 0.96 16 26 C 0.02 0.22 5.64 -3.72 -0.02 0.20 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.21 6.27 -51.93 -0.33 0.88 16 34 H 0.07 1.13 7.01 -51.93 -0.36 0.77 16 35 H 0.03 0.81 8.03 -51.93 -0.42 0.40 16 36 H 0.04 1.03 4.90 -51.93 -0.25 0.78 16 37 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.08 1.37 6.44 -51.93 -0.33 1.03 16 39 H 0.08 1.55 7.36 -51.93 -0.38 1.16 16 40 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 41 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 49 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -28.49 397.65 -9.66 -38.15 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -8.63 Total: 4.67 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 1.36 Total: 3.88 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: -0.80 Total: -44.22 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.29 Total: -17.68 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: -3.87 SS G_CDS: -2.27 Total: -6.14 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.49 -9.66 -38.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066833579.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.263 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds