Wall clock time and date at job start Tue Mar 31 2020 17:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81407 * 102.99829 * 2 1 4 4 C 1.53001 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47229 * 304.99688 * 4 3 2 6 6 C 1.53003 * 109.47041 * 64.99897 * 4 3 2 7 7 C 1.50700 * 109.46702 * 184.99429 * 4 3 2 8 8 O 1.21280 * 120.00160 * 346.40937 * 7 4 3 9 9 N 1.34784 * 119.99472 * 166.40224 * 7 4 3 10 10 C 1.46491 * 120.00328 * 4.98162 * 9 7 4 11 11 C 1.50702 * 109.47026 * 264.66249 * 10 9 7 12 12 H 1.08011 * 119.99812 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00707 * 179.97438 * 11 10 9 14 14 N 1.31524 * 119.99523 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00761 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46459 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.47054 * 120.00085 * 15 13 11 18 18 H 1.48499 * 109.47300 * 240.00342 * 15 13 11 19 19 C 1.46505 * 119.99720 * 184.97156 * 9 7 4 20 20 C 1.53001 * 109.47104 * 270.00786 * 19 9 7 21 21 N 1.46899 * 109.46966 * 180.02562 * 20 19 9 22 22 C 1.47015 * 110.99778 * 293.63358 * 21 20 19 23 23 C 1.53104 * 109.25866 * 177.61228 * 22 21 20 24 24 O 1.43004 * 109.26066 * 56.84414 * 23 22 21 25 25 C 1.43017 * 113.74060 * 301.33297 * 24 23 22 26 26 C 1.47013 * 111.00044 * 169.99920 * 21 20 19 27 27 H 1.09007 * 109.47103 * 300.00272 * 1 2 3 28 28 H 1.09003 * 109.47283 * 60.00042 * 1 2 3 29 29 H 1.08994 * 109.47676 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47184 * 59.99858 * 3 2 1 31 31 H 1.09006 * 109.46563 * 299.99707 * 3 2 1 32 32 H 1.09001 * 109.46745 * 169.53310 * 6 4 3 33 33 H 1.08994 * 109.47168 * 289.53128 * 6 4 3 34 34 H 1.08996 * 109.47166 * 49.53832 * 6 4 3 35 35 H 1.09005 * 109.47210 * 24.65564 * 10 9 7 36 36 H 1.08998 * 109.47666 * 144.66752 * 10 9 7 37 37 H 0.96997 * 119.99635 * 180.02562 * 14 13 11 38 38 H 1.08997 * 109.47089 * 150.00055 * 19 9 7 39 39 H 1.09008 * 109.47036 * 30.00488 * 19 9 7 40 40 H 1.08992 * 109.47348 * 59.99843 * 20 19 9 41 41 H 1.09004 * 109.46505 * 299.99538 * 20 19 9 42 42 H 1.09005 * 109.50359 * 297.53675 * 22 21 20 43 43 H 1.08996 * 109.51376 * 57.67004 * 22 21 20 44 44 H 1.09007 * 109.49987 * 296.90635 * 23 22 21 45 45 H 1.08998 * 109.53998 * 176.80569 * 23 22 21 46 46 H 1.09005 * 109.50540 * 298.73473 * 25 24 23 47 47 H 1.08997 * 109.54708 * 178.63055 * 25 24 23 48 48 H 1.09000 * 109.50313 * 302.31861 * 26 21 20 49 49 H 1.08993 * 109.50902 * 62.40880 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.1701 1.3952 0.8409 6 6 4.3171 1.3918 -1.3083 7 6 4.0819 3.4030 0.1230 8 8 3.2215 4.2414 -0.0430 9 7 5.3419 3.7796 0.4183 10 6 6.4040 2.7749 0.5114 11 6 6.5810 2.3630 1.9502 12 1 5.9638 2.8051 2.7184 13 6 7.5302 1.4211 2.2859 14 7 8.2815 0.8823 1.3504 15 14 7.7502 0.9110 4.0694 16 1 6.7901 1.6593 4.9201 17 1 7.4972 -0.5462 4.2023 18 1 9.1376 1.2141 4.5035 19 6 5.6494 5.1938 0.6460 20 6 6.0361 5.8515 -0.6802 21 7 6.3450 7.2694 -0.4518 22 6 5.1442 8.0102 -0.0387 23 6 5.5222 9.4664 0.2456 24 8 6.1332 10.0309 -0.9176 25 6 7.3060 9.3344 -1.3474 26 6 6.9461 7.8770 -1.6480 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8031 2.2372 0.8899 31 1 1.8031 2.2371 -0.8901 32 1 5.3654 1.6785 -1.3928 33 1 4.2363 0.3048 -1.3133 34 1 3.7594 1.8016 -2.1504 35 1 6.1333 1.9037 -0.0852 36 1 7.3368 3.1964 0.1368 37 1 8.9490 0.2194 1.5865 38 1 6.4788 5.2768 1.3483 39 1 4.7730 5.6944 1.0578 40 1 5.2067 5.7685 -1.3825 41 1 6.9125 5.3509 -1.0920 42 1 4.4028 7.9760 -0.8370 43 1 4.7303 7.5589 0.8630 44 1 6.2230 9.5042 1.0797 45 1 4.6259 10.0332 0.4975 46 1 8.0587 9.3685 -0.5598 47 1 7.7001 9.8052 -2.2480 48 1 7.8476 7.3284 -1.9209 49 1 6.2338 7.8398 -2.4722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066833581.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:41 Heat of formation + Delta-G solvation = -79.276077 kcal Electronic energy + Delta-G solvation = -27351.080785 eV Core-core repulsion = 23632.515296 eV Total energy + Delta-G solvation = -3718.565489 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -39.78274 -39.26149 -36.21928 -34.91125 -34.08622 -32.60217 -31.25508 -29.78771 -29.00773 -27.34147 -26.89662 -26.03602 -24.06882 -23.43820 -22.73624 -21.18808 -20.33755 -18.20132 -16.99653 -16.56268 -16.52138 -16.14284 -15.68469 -15.51368 -15.15078 -15.05134 -14.82619 -14.59047 -14.41812 -14.27193 -13.72969 -13.61560 -13.27177 -13.05782 -12.94899 -12.52784 -12.34614 -12.32005 -12.03761 -11.94088 -11.74648 -11.53462 -11.42901 -11.22134 -11.03742 -10.97376 -10.79765 -10.69568 -10.56557 -10.38840 -10.10177 -9.82006 -9.79053 -9.64046 -9.05206 -8.54701 -8.36199 -7.79913 -7.51408 -6.20024 -4.26758 1.78513 2.73463 3.22213 3.25808 3.31381 3.35187 3.56949 3.80130 4.15535 4.33745 4.83418 4.97955 5.00151 5.01844 5.10466 5.12722 5.13227 5.15849 5.20631 5.21701 5.28757 5.45809 5.50460 5.55857 5.62030 5.66987 5.74833 5.76846 5.81813 5.91657 5.93331 5.94142 5.95745 6.21519 6.24438 6.41242 6.48250 6.53174 6.72852 6.97049 7.02238 7.08252 7.18794 7.48319 7.73640 8.02508 8.26428 8.74558 8.91320 9.41108 10.86913 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.008465 B = 0.003910 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.908531 B = 7160.042086 C = 9604.950582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.258 6.258 3 C -0.057 4.057 4 C -0.092 4.092 5 H 0.118 0.882 6 C -0.144 4.144 7 C 0.526 3.474 8 O -0.577 6.577 9 N -0.590 5.590 10 C 0.224 3.776 11 C -0.538 4.538 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.890 5.890 15 Si 0.895 3.105 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.283 1.283 19 C 0.127 3.873 20 C 0.045 3.955 21 N -0.533 5.533 22 C 0.015 3.985 23 C 0.064 3.936 24 O -0.390 6.390 25 C 0.065 3.935 26 C 0.018 3.982 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.265 0.735 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.090 0.910 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.086 0.914 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 7.602 -5.188 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.032 6.032 3 C -0.206 4.206 4 C -0.115 4.115 5 H 0.136 0.864 6 C -0.202 4.202 7 C 0.313 3.687 8 O -0.459 6.459 9 N -0.319 5.319 10 C 0.105 3.895 11 C -0.576 4.576 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.528 5.528 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.209 1.209 19 C 0.003 3.997 20 C -0.084 4.084 21 N -0.258 5.258 22 C -0.113 4.113 23 C -0.013 4.013 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.096 0.904 42 H 0.060 0.940 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.105 0.895 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.274 7.202 -5.009 10.786 hybrid contribution -1.002 0.219 0.520 1.150 sum -7.276 7.422 -4.489 11.322 Atomic orbital electron populations 1.23357 0.95287 1.06026 1.04667 1.86933 1.06067 1.12145 1.98050 1.23222 0.99007 0.92834 1.05514 1.20971 0.93189 0.94670 1.02626 0.86382 1.21928 1.01925 1.01828 0.94493 1.20315 0.82219 0.90274 0.75935 1.90580 1.48341 1.53960 1.52975 1.48159 1.09196 1.07744 1.66830 1.19784 0.85048 0.86738 0.97979 1.21483 1.19709 1.23477 0.92971 0.92086 1.24912 0.95271 0.95771 0.97668 1.69921 1.22074 1.28226 1.32572 0.86484 0.78054 0.78542 0.84687 1.19682 1.20748 1.20876 1.21184 1.01421 0.81366 0.95757 1.22503 1.00420 0.86874 0.98598 1.62145 1.27660 1.02576 1.33460 1.22835 0.91879 0.94747 1.01818 1.22682 0.98042 0.92608 0.87934 1.87948 1.42483 1.54210 1.46174 1.22653 0.87631 0.90795 1.00138 1.22766 1.00270 0.96185 0.91795 0.90740 0.90782 0.88388 0.89937 0.89779 0.90411 0.91049 0.92944 0.92653 0.94745 0.92549 0.89389 0.91278 0.94532 0.90373 0.93966 0.89127 0.92188 0.88632 0.92179 0.88677 0.89531 0.94179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.76 101.05 1.09 -0.24 16 2 S -0.26 -3.77 21.40 -107.50 -2.30 -6.07 16 3 C -0.06 -0.91 4.68 37.16 0.17 -0.73 16 4 C -0.09 -1.67 1.90 -91.77 -0.17 -1.84 16 5 H 0.12 2.38 7.48 -51.93 -0.39 1.99 16 6 C -0.14 -2.40 8.38 37.16 0.31 -2.09 16 7 C 0.53 10.47 6.91 -10.98 -0.08 10.39 16 8 O -0.58 -12.26 15.71 5.56 0.09 -12.17 16 9 N -0.59 -11.87 2.46 -175.06 -0.43 -12.30 16 10 C 0.22 5.06 4.61 -5.20 -0.02 5.04 16 11 C -0.54 -13.57 9.14 -34.44 -0.31 -13.89 16 12 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 13 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -23.95 13.29 55.43 0.74 -23.22 16 15 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 19 C 0.13 2.30 5.32 -4.04 -0.02 2.28 16 20 C 0.04 0.72 5.28 -3.82 -0.02 0.70 16 21 N -0.53 -7.58 4.73 -234.31 -1.11 -8.69 16 22 C 0.02 0.21 5.44 -3.71 -0.02 0.19 16 23 C 0.06 0.74 7.01 37.21 0.26 1.00 16 24 O -0.39 -4.98 10.83 -35.23 -0.38 -5.36 16 25 C 0.06 0.71 7.01 37.21 0.26 0.97 16 26 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 27 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.08 1.31 8.07 -51.92 -0.42 0.89 16 32 H 0.08 1.38 5.56 -51.93 -0.29 1.09 16 33 H 0.07 1.15 7.53 -51.93 -0.39 0.76 16 34 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.06 1.27 4.14 -51.93 -0.22 1.06 16 36 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 37 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 38 H 0.09 1.66 8.07 -51.93 -0.42 1.24 16 39 H 0.07 1.26 5.87 -51.92 -0.30 0.96 16 40 H 0.04 0.63 8.12 -51.93 -0.42 0.21 16 41 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.22 6.38 -51.93 -0.33 0.89 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 49 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -28.36 397.89 -9.72 -38.08 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -8.63 Total: 4.76 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 1.33 Total: 3.62 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.80 Total: -44.21 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -0.29 Total: -17.53 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -2.30 Total: -6.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -28.36 -9.72 -38.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066833581.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.194 kcal (2) G-P(sol) polarization free energy of solvation -28.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds