Wall clock time and date at job start Tue Mar 31 2020 18:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 119.99874 * 2 1 4 4 C 1.50699 * 109.47301 * 275.00035 * 3 2 1 5 5 H 1.07998 * 120.00127 * 0.02562 * 4 3 2 6 6 C 1.37879 * 119.99612 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99606 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00411 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.46737 * 89.99716 * 8 6 4 10 10 H 1.48497 * 109.47285 * 209.99604 * 8 6 4 11 11 H 1.48491 * 109.47057 * 330.00091 * 8 6 4 12 12 S 1.65604 * 119.99938 * 180.02562 * 2 1 3 13 13 O 1.42092 * 106.40266 * 156.45776 * 12 2 1 14 14 O 1.42108 * 106.40168 * 23.53522 * 12 2 1 15 15 N 1.65603 * 107.21770 * 269.99948 * 12 2 1 16 16 C 1.46501 * 119.99552 * 269.99918 * 15 12 2 17 17 C 1.52997 * 109.47173 * 264.99681 * 16 15 12 18 18 C 1.52989 * 117.50144 * 243.74998 * 17 16 15 19 19 C 1.52995 * 117.49799 * 175.08948 * 17 16 15 20 20 C 1.46492 * 120.00073 * 89.99938 * 15 12 2 21 21 C 1.53002 * 109.47204 * 120.00201 * 20 15 12 22 22 C 1.53000 * 109.47233 * 180.02562 * 21 20 15 23 23 C 1.52997 * 109.47060 * 299.99657 * 22 21 20 24 24 C 1.52999 * 109.47317 * 59.99960 * 23 22 21 25 25 C 1.52997 * 109.47244 * 239.99953 * 20 15 12 26 26 H 1.08998 * 109.46770 * 269.99686 * 1 2 3 27 27 H 1.08991 * 109.47021 * 29.99699 * 1 2 3 28 28 H 1.08998 * 109.47182 * 150.00046 * 1 2 3 29 29 H 1.09003 * 109.47306 * 35.00676 * 3 2 1 30 30 H 1.09003 * 109.46925 * 155.00357 * 3 2 1 31 31 H 0.96999 * 120.00216 * 179.97438 * 7 6 4 32 32 H 1.08993 * 109.47379 * 25.00361 * 16 15 12 33 33 H 1.09004 * 109.46814 * 144.99846 * 16 15 12 34 34 H 1.09000 * 115.54914 * 29.42359 * 17 16 15 35 35 H 1.09001 * 117.50488 * 0.02562 * 18 17 16 36 36 H 1.09008 * 117.50185 * 145.02183 * 18 17 16 37 37 H 1.09005 * 117.49850 * 214.98009 * 19 17 16 38 38 H 1.08997 * 117.49938 * 0.02562 * 19 17 16 39 39 H 1.09002 * 109.47696 * 359.97438 * 20 15 12 40 40 H 1.08992 * 109.47063 * 59.99836 * 21 20 15 41 41 H 1.09004 * 109.46733 * 299.99549 * 21 20 15 42 42 H 1.09002 * 109.47398 * 59.99826 * 22 21 20 43 43 H 1.09001 * 109.47194 * 180.02562 * 22 21 20 44 44 H 1.08996 * 109.47853 * 180.02562 * 23 22 21 45 45 H 1.09002 * 109.47153 * 300.00319 * 23 22 21 46 46 H 1.09000 * 109.47486 * 180.02562 * 24 23 22 47 47 H 1.09002 * 109.46716 * 60.00091 * 24 23 22 48 48 H 1.09002 * 109.47153 * 300.00242 * 25 20 15 49 49 H 1.09001 * 109.47289 * 60.00326 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7657 -1.4154 5 1 1.9282 1.1939 -2.2331 6 6 2.9997 2.9509 -1.6662 7 7 3.1249 3.3849 -2.9014 8 14 3.7138 3.9403 -0.2518 9 1 5.1111 3.5054 0.0006 10 1 3.6999 5.3836 -0.6006 11 1 2.8982 3.7181 0.9691 12 16 2.2931 -1.4342 -0.0006 13 8 3.5759 -1.1566 -0.5450 14 8 1.4113 -2.4064 -0.5454 15 7 2.5382 -1.8594 1.5810 16 6 3.7454 -1.4131 2.2808 17 6 4.8136 -2.5057 2.2025 18 6 5.2630 -3.1496 3.5155 19 6 6.1949 -2.1855 2.7772 20 6 1.5479 -2.6818 2.2803 21 6 2.2045 -3.9814 2.7502 22 6 1.1701 -4.8406 3.4800 23 6 0.6330 -4.0741 4.6903 24 6 -0.0236 -2.7744 4.2205 25 6 1.0113 -1.9150 3.4906 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6502 2.0042 0.5895 30 1 3.1858 1.1176 0.4343 31 1 3.5877 4.2189 -3.0779 32 1 4.1212 -0.5033 1.8128 33 1 3.5067 -1.2125 3.3252 34 1 4.7714 -3.1419 1.3185 35 1 4.7975 -2.7952 4.4352 36 1 5.5169 -4.2095 3.4954 37 1 7.0615 -2.6116 2.2715 38 1 6.3426 -1.1967 3.2113 39 1 0.7253 -2.9138 1.6038 40 1 3.0268 -3.7490 3.4268 41 1 2.5867 -4.5278 1.8879 42 1 0.3480 -5.0730 2.8030 43 1 1.6380 -5.7663 3.8152 44 1 -0.1037 -4.6862 5.2105 45 1 1.4550 -3.8417 5.3673 46 1 -0.4059 -2.2281 5.0828 47 1 -0.8457 -3.0068 3.5435 48 1 1.8336 -1.6826 4.1673 49 1 0.5434 -0.9891 3.1559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069126409.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:38 Heat of formation + Delta-G solvation = -61.339116 kcal Electronic energy + Delta-G solvation = -29018.828585 eV Core-core repulsion = 25301.040901 eV Total energy + Delta-G solvation = -3717.787684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -39.36042 -37.39414 -36.57729 -35.61498 -35.17630 -34.54970 -32.38040 -30.85468 -29.59607 -28.38316 -26.39529 -25.14785 -22.89139 -22.38420 -22.19270 -21.84577 -20.75910 -19.58979 -18.49784 -17.36353 -16.93688 -16.66018 -16.49838 -15.35331 -15.28398 -14.63485 -14.39605 -14.34659 -14.27808 -13.90943 -13.70946 -13.17788 -13.02820 -12.98518 -12.74027 -12.51490 -12.35893 -12.27290 -11.77931 -11.71917 -11.59933 -11.53398 -11.43411 -11.33972 -11.28759 -11.22310 -11.16305 -10.68427 -10.66301 -10.49509 -10.39113 -10.34463 -10.27758 -10.18278 -9.83399 -9.55357 -8.89252 -8.59399 -8.09656 -6.08326 -4.07621 1.11181 3.25946 3.30949 3.32172 3.38984 3.79612 4.00200 4.37667 4.52139 4.64422 4.68036 4.75202 4.85293 4.87281 5.01726 5.03872 5.15224 5.21405 5.24294 5.35865 5.39772 5.40556 5.46723 5.53571 5.58379 5.59438 5.64573 5.71054 5.84837 5.86427 5.90266 5.93034 5.94756 6.05617 6.06201 6.08277 6.17884 6.22031 6.26476 6.28565 6.44536 6.48034 6.68503 6.81151 7.08741 7.40645 7.57867 8.49030 8.96630 9.50592 11.05352 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.004711 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.503652 B = 5942.563317 C = 6653.586636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.991 5.991 3 C 0.229 3.771 4 C -0.531 4.531 5 H 0.077 0.923 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.871 3.129 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 S 2.776 3.224 13 O -0.956 6.956 14 O -0.992 6.992 15 N -1.003 6.003 16 C 0.154 3.846 17 C -0.160 4.160 18 C -0.181 4.181 19 C -0.175 4.175 20 C 0.151 3.849 21 C -0.129 4.129 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.130 4.130 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.027 0.973 31 H 0.265 0.735 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.067 0.933 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.750 -13.503 18.475 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.833 5.833 3 C 0.105 3.895 4 C -0.571 4.571 5 H 0.095 0.905 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.698 3.302 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.190 1.190 12 S 2.786 3.214 13 O -0.940 6.940 14 O -0.976 6.976 15 N -0.839 5.839 16 C 0.028 3.972 17 C -0.180 4.180 18 C -0.218 4.218 19 C -0.213 4.213 20 C 0.045 3.955 21 C -0.168 4.168 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.155 4.155 25 C -0.169 4.169 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.403 -13.801 17.569 22.470 hybrid contribution 0.377 0.891 0.867 1.299 sum -2.026 -12.910 18.436 22.597 Atomic orbital electron populations 1.21368 0.79815 1.03815 1.00162 1.57461 1.14436 1.22584 1.88777 1.19415 0.90657 0.80847 0.98553 1.21377 1.36820 1.06998 0.91856 0.90489 1.24868 0.95367 0.97174 0.95509 1.69898 1.42577 1.21973 1.18865 0.86932 0.80415 0.79774 0.83087 1.19743 1.20949 1.18970 1.02204 0.73544 0.72829 0.72872 1.93637 1.40221 1.84750 1.75380 1.93518 1.67444 1.60132 1.76493 1.58371 1.28251 1.64682 1.32615 1.20764 0.82597 0.95580 0.98215 1.22803 0.95868 1.01775 0.97547 1.23037 1.04455 0.98538 0.95766 1.22972 0.93801 1.00598 1.03943 1.20837 0.90380 0.90068 0.94236 1.22008 0.98763 0.95328 1.00729 1.21532 0.98895 0.98121 0.97137 1.21545 1.00046 0.96441 0.97634 1.21519 0.98081 0.95978 0.99971 1.21936 0.98917 0.98836 0.97212 0.94247 0.90199 0.91408 0.94989 0.95544 0.92523 0.89440 0.90428 0.87585 0.88936 0.89122 0.88758 0.88652 0.88649 0.90316 0.91772 0.91833 0.91980 0.92217 0.92103 0.91891 0.91727 0.91479 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.68 59.85 0.64 2.24 16 2 N -0.99 -20.15 3.23 -123.06 -0.40 -20.54 16 3 C 0.23 5.36 4.15 -5.20 -0.02 5.33 16 4 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 7 N -0.89 -27.58 13.96 55.43 0.77 -26.80 16 8 Si 0.87 20.95 27.47 -169.99 -4.67 16.28 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 12 S 2.78 54.93 6.01 -107.50 -0.65 54.28 16 13 O -0.96 -22.60 16.08 -57.17 -0.92 -23.52 16 14 O -0.99 -20.71 15.31 -57.17 -0.88 -21.58 16 15 N -1.00 -14.73 2.80 -107.31 -0.30 -15.03 16 16 C 0.15 2.06 5.18 -4.04 -0.02 2.04 16 17 C -0.16 -1.99 4.65 -90.63 -0.42 -2.41 16 18 C -0.18 -1.72 8.21 -26.70 -0.22 -1.94 16 19 C -0.18 -1.90 10.25 -26.70 -0.27 -2.18 16 20 C 0.15 1.84 2.51 -67.94 -0.17 1.67 16 21 C -0.13 -1.36 4.52 -26.73 -0.12 -1.48 16 22 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 23 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 24 C -0.12 -0.98 5.93 -26.70 -0.16 -1.14 16 25 C -0.13 -1.31 5.17 -26.70 -0.14 -1.45 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 28 H 0.07 1.11 7.02 -51.93 -0.36 0.75 16 29 H 0.03 0.71 7.17 -51.93 -0.37 0.34 16 30 H 0.03 0.62 6.75 -51.93 -0.35 0.27 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.09 1.32 7.32 -51.93 -0.38 0.94 16 33 H 0.08 0.84 6.18 -51.93 -0.32 0.52 16 34 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.09 0.78 8.00 -51.93 -0.42 0.37 16 36 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.10 1.27 6.91 -51.93 -0.36 0.91 16 40 H 0.08 0.77 4.99 -51.93 -0.26 0.51 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.64 6.69 -51.93 -0.35 0.29 16 49 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -33.77 385.42 -11.56 -45.33 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.67 Total: 0.87 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -1.66 Total: -15.09 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: 0.08 Total: -62.38 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -1.79 Total: -45.10 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.28 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.65 Total: 54.28 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.77 -11.56 -45.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069126409.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.013 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.83 seconds