Wall clock time and date at job start Tue Mar 31 2020 15:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.45202 * 109.46867 * 240.00586 * 2 1 3 6 6 C 1.34628 * 117.00407 * 59.99955 * 5 2 1 7 7 O 1.21513 * 120.00136 * 359.97438 * 6 5 2 8 8 N 1.34780 * 120.00286 * 179.97438 * 6 5 2 9 9 C 1.47082 * 120.87717 * 359.72134 * 8 6 5 10 10 C 1.53697 * 108.27530 * 128.75735 * 9 8 6 11 11 N 1.46894 * 109.25909 * 54.07937 * 10 9 8 12 12 C 1.46904 * 111.00020 * 172.60614 * 11 10 9 13 13 C 1.52993 * 109.47103 * 294.30449 * 12 11 10 14 14 C 1.53003 * 109.47052 * 180.02562 * 13 12 11 15 15 S 1.81000 * 109.46942 * 179.97438 * 14 13 12 16 16 C 1.76200 * 99.99697 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00294 * 0.02562 * 16 15 14 18 18 C 1.38801 * 120.00036 * 180.02562 * 16 15 14 19 19 N 1.31633 * 120.00031 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00162 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47333 * 59.99609 * 20 18 16 22 22 H 1.48498 * 109.47325 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46979 * 299.99546 * 20 18 16 24 24 C 1.46896 * 111.26864 * 296.75870 * 11 10 9 25 25 C 1.47073 * 120.88371 * 179.97438 * 8 6 5 26 26 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 30 30 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 32 32 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 33 33 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 34 34 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 35 35 H 1.09007 * 109.62440 * 248.52448 * 9 8 6 36 36 H 1.08996 * 109.63024 * 9.10279 * 9 8 6 37 37 H 1.09002 * 109.64179 * 294.07508 * 10 9 8 38 38 H 1.08997 * 109.41831 * 173.94410 * 10 9 8 39 39 H 1.08996 * 109.46951 * 54.30234 * 12 11 10 40 40 H 1.09001 * 109.46790 * 174.29797 * 12 11 10 41 41 H 1.09004 * 109.47297 * 299.99917 * 13 12 11 42 42 H 1.08996 * 109.47537 * 59.99591 * 13 12 11 43 43 H 1.08996 * 109.46900 * 299.99723 * 14 13 12 44 44 H 1.08994 * 109.47229 * 59.99912 * 14 13 12 45 45 H 0.97002 * 119.99897 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.49595 * 303.14168 * 24 11 10 47 47 H 1.09003 * 109.51717 * 183.08136 * 24 11 10 48 48 H 1.09006 * 109.63246 * 350.89817 * 25 8 6 49 49 H 1.08999 * 109.63139 * 111.47706 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1857 6 6 1.6523 -0.1727 -2.3772 7 8 0.9509 0.8184 -2.4252 8 7 2.0681 -0.7598 -3.5170 9 6 2.9224 -1.9565 -3.4815 10 6 2.2872 -3.0291 -4.3806 11 7 2.0610 -2.4675 -5.7190 12 6 1.6183 -3.5069 -6.6580 13 6 2.7457 -4.5200 -6.8660 14 6 2.2848 -5.6022 -7.8445 15 16 3.6189 -6.8003 -8.0910 16 6 2.8376 -7.8989 -9.2257 17 1 1.8252 -7.7095 -9.5506 18 6 3.5232 -9.0078 -9.7020 19 7 4.7573 -9.2384 -9.3064 20 14 2.6952 -10.1720 -10.9054 21 1 2.3184 -9.4281 -12.1341 22 1 3.6329 -11.2679 -11.2588 23 1 1.4762 -10.7453 -10.2804 24 6 1.1028 -1.3550 -5.6750 25 6 1.6840 -0.2176 -4.8291 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 -1.7490 1.2492 33 1 3.1301 -0.7209 1.2493 34 1 1.6767 -0.2075 2.1392 35 1 3.9173 -1.7071 -3.8507 36 1 2.9907 -2.3275 -2.4589 37 1 1.3360 -3.3480 -3.9544 38 1 2.9586 -3.8846 -4.4538 39 1 0.7437 -4.0149 -6.2518 40 1 1.3612 -3.0482 -7.6128 41 1 3.6204 -4.0120 -7.2722 42 1 3.0028 -4.9786 -5.9112 43 1 1.4101 -6.1102 -7.4387 44 1 2.0282 -5.1432 -8.7992 45 1 5.2364 -10.0136 -9.6390 46 1 0.1681 -1.6972 -5.2309 47 1 0.9147 -0.9962 -6.6870 48 1 0.9331 0.5616 -4.6979 49 1 2.5619 0.1959 -5.3256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072513529.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:59 Heat of formation + Delta-G solvation = -85.179840 kcal Electronic energy + Delta-G solvation = -26261.908147 eV Core-core repulsion = 22543.086652 eV Total energy + Delta-G solvation = -3718.821495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.12996 -39.22948 -37.24297 -35.45666 -34.26175 -32.57092 -32.38762 -31.33092 -28.04466 -27.73818 -27.70021 -25.68843 -24.64187 -24.08420 -22.74641 -20.94009 -20.65118 -19.41230 -18.17515 -17.46129 -16.96401 -16.47934 -15.77548 -15.50917 -15.24951 -14.91311 -14.88015 -14.80499 -14.57831 -14.43169 -13.92592 -13.77535 -13.67937 -13.02085 -12.86229 -12.63791 -12.50089 -12.23679 -12.22285 -12.02008 -11.92210 -11.77936 -11.68392 -11.64491 -11.50891 -11.31202 -11.18984 -11.04569 -10.79069 -10.66450 -10.64048 -10.29515 -10.22114 -9.56759 -9.08347 -9.05107 -8.42089 -8.30796 -6.52867 -6.22798 -3.93068 1.86536 2.59503 3.20962 3.22959 3.27568 3.47335 3.54956 3.81722 4.22599 4.38112 4.42882 4.56698 4.61027 4.71839 4.82792 4.98868 5.07489 5.12974 5.13207 5.15533 5.20225 5.28682 5.32217 5.35378 5.36337 5.44411 5.46811 5.52119 5.53683 5.60299 5.64099 5.66099 5.70614 5.79145 5.90619 5.95662 5.96865 6.04687 6.16192 6.20043 6.32020 6.56525 6.71113 6.91797 6.93856 7.14377 7.60120 8.08780 8.36256 9.23372 10.85268 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028581 B = 0.001839 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.441711 B =15221.138091 C =15663.896977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.183 4.183 4 C -0.141 4.141 5 O -0.362 6.362 6 C 0.654 3.346 7 O -0.573 6.573 8 N -0.596 5.596 9 C 0.117 3.883 10 C 0.036 3.964 11 N -0.537 5.537 12 C 0.061 3.939 13 C -0.094 4.094 14 C -0.113 4.113 15 S -0.131 6.131 16 C -0.517 4.517 17 H 0.071 0.929 18 C 0.071 3.929 19 N -0.870 5.870 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.040 3.960 25 C 0.133 3.867 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.098 0.902 39 H 0.033 0.967 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.268 0.732 46 H 0.037 0.963 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 20.287 18.388 28.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.240 4.240 4 C -0.198 4.198 5 O -0.277 6.277 6 C 0.409 3.591 7 O -0.463 6.463 8 N -0.337 5.337 9 C -0.006 4.006 10 C -0.093 4.093 11 N -0.262 5.262 12 C -0.068 4.068 13 C -0.132 4.132 14 C -0.262 4.262 15 S 0.097 5.903 16 C -0.665 4.665 17 H 0.090 0.910 18 C -0.138 4.138 19 N -0.505 5.505 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.089 4.089 25 C 0.012 3.988 26 H 0.105 0.895 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.117 0.883 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.056 0.944 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.125 20.619 18.726 28.321 hybrid contribution -2.532 -1.125 -1.023 2.953 sum -7.657 19.494 17.703 27.423 Atomic orbital electron populations 1.22512 0.94043 1.02928 1.04528 1.22075 0.94345 0.92224 0.81500 1.22506 1.01570 0.95359 1.04533 1.21861 1.02322 1.01179 0.94444 1.86299 1.71467 1.56250 1.13641 1.17959 0.78640 0.81355 0.81122 1.90875 1.41675 1.27023 1.86760 1.47061 1.52742 1.30351 1.03556 1.21981 0.93892 0.83860 1.00866 1.22660 1.00566 0.97428 0.88616 1.61948 1.46016 1.10006 1.08195 1.22199 0.96943 0.92021 0.95645 1.21290 0.97915 0.94561 0.99463 1.23231 1.02880 0.99641 1.00490 1.84616 1.19519 1.25871 1.60302 1.22650 1.02286 1.11452 1.30143 0.91048 1.25014 0.94944 0.97185 0.96655 1.70013 1.09995 1.27940 1.42568 0.86228 0.79027 0.79665 0.80635 1.19945 1.20812 1.19974 1.22499 0.93598 0.92178 1.00586 1.21752 1.01264 0.95945 0.79846 0.89452 0.92198 0.91181 0.91198 0.92163 0.89435 0.91403 0.91395 0.90171 0.90105 0.88766 0.94384 0.88347 0.94874 0.90575 0.90638 0.91659 0.92400 0.92119 0.92257 0.94446 0.89058 0.88442 0.90160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 8.37 37.16 0.31 -1.24 16 2 C 0.14 1.17 1.13 -90.62 -0.10 1.06 16 3 C -0.18 -1.51 8.37 37.16 0.31 -1.20 16 4 C -0.14 -0.87 8.85 37.16 0.33 -0.54 16 5 O -0.36 -3.87 8.57 -40.29 -0.35 -4.21 16 6 C 0.65 7.73 7.75 54.06 0.42 8.15 16 7 O -0.57 -7.67 11.33 -19.28 -0.22 -7.89 16 8 N -0.60 -6.33 3.00 -178.00 -0.53 -6.86 16 9 C 0.12 1.12 6.64 -3.36 -0.02 1.09 16 10 C 0.04 0.38 5.48 -3.47 -0.02 0.36 16 11 N -0.54 -6.04 4.63 -234.06 -1.08 -7.13 16 12 C 0.06 0.77 4.96 -3.83 -0.02 0.75 16 13 C -0.09 -1.46 5.15 -26.73 -0.14 -1.59 16 14 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 15 S -0.13 -3.40 21.44 -107.50 -2.30 -5.70 16 16 C -0.52 -14.77 9.50 30.94 0.29 -14.47 16 17 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 18 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 19 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 20 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.04 0.39 5.62 -3.72 -0.02 0.37 16 25 C 0.13 1.27 6.59 -3.63 -0.02 1.25 16 26 H 0.09 0.94 5.88 -51.93 -0.31 0.64 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.92 5.88 -51.93 -0.31 0.62 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 0.84 6.98 -51.93 -0.36 0.47 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.10 1.06 6.16 -51.93 -0.32 0.74 16 39 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 40 H 0.08 0.93 7.97 -51.93 -0.41 0.51 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.01 6.40 -51.93 -0.33 0.68 16 43 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 44 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 45 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 0.77 7.99 -51.93 -0.41 0.36 16 48 H 0.10 0.94 7.06 -51.93 -0.37 0.58 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 395.19 15.07 5.96 5.96 Total: -1.00 -32.17 395.19 -10.09 -42.27 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.71 Total: -1.60 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 1.43 Total: -6.11 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: -0.88 Total: -39.14 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.56 Total: -12.11 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -2.30 Total: -5.70 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.17 -10.09 -42.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072513529.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.913 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds