Wall clock time and date at job start Tue Mar 31 2020 18:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99473 * 2 1 4 4 C 1.53003 * 109.47457 * 66.04597 * 3 2 1 5 5 C 1.52995 * 117.49747 * 243.74653 * 4 3 2 6 6 C 1.52990 * 117.50065 * 175.08250 * 4 3 2 7 7 C 1.46894 * 111.00116 * 236.04962 * 2 1 3 8 8 C 1.53004 * 109.46969 * 293.94938 * 7 2 1 9 9 H 1.09000 * 110.88352 * 57.42953 * 8 7 2 10 10 C 1.55162 * 111.00641 * 293.55163 * 8 7 2 11 11 C 1.54323 * 102.94178 * 206.42150 * 10 8 7 12 12 N 1.47020 * 107.27140 * 22.19175 * 11 10 8 13 13 S 1.65599 * 125.64991 * 181.02007 * 12 11 10 14 14 O 1.42106 * 104.27393 * 333.95686 * 13 12 11 15 15 O 1.42100 * 104.28186 * 206.09686 * 13 12 11 16 16 C 1.81399 * 104.44810 * 90.02431 * 13 12 11 17 17 C 1.52998 * 109.47111 * 180.02562 * 16 13 12 18 18 C 1.50706 * 109.47348 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99758 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00217 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47483 * 269.99808 * 22 20 18 24 24 H 1.48499 * 109.47134 * 30.00322 * 22 20 18 25 25 H 1.48507 * 109.46904 * 150.00145 * 22 20 18 26 26 C 1.47428 * 108.70302 * 1.28712 * 12 11 10 27 27 H 1.09003 * 109.46940 * 183.94994 * 1 2 3 28 28 H 1.08999 * 109.47545 * 303.95335 * 1 2 3 29 29 H 1.09007 * 109.46981 * 63.95821 * 1 2 3 30 30 H 1.09001 * 109.46434 * 186.04239 * 3 2 1 31 31 H 1.08994 * 109.47391 * 306.04359 * 3 2 1 32 32 H 1.09008 * 115.54649 * 29.41015 * 4 3 2 33 33 H 1.09001 * 117.50302 * 359.97438 * 5 4 3 34 34 H 1.09004 * 117.50045 * 145.02026 * 5 4 3 35 35 H 1.08996 * 117.50234 * 214.97829 * 6 4 3 36 36 H 1.09005 * 117.50100 * 359.97438 * 6 4 3 37 37 H 1.09004 * 109.46924 * 173.95851 * 7 2 1 38 38 H 1.08995 * 109.47731 * 53.94962 * 7 2 1 39 39 H 1.08997 * 110.72134 * 88.05866 * 10 8 7 40 40 H 1.09004 * 110.86670 * 324.85663 * 10 8 7 41 41 H 1.08993 * 109.88179 * 262.77280 * 11 10 8 42 42 H 1.08998 * 109.87881 * 141.60857 * 11 10 8 43 43 H 1.09000 * 109.47241 * 60.00442 * 16 13 12 44 44 H 1.09002 * 109.47106 * 299.99999 * 16 13 12 45 45 H 1.09001 * 109.47671 * 60.00243 * 17 16 13 46 46 H 1.09006 * 109.47297 * 299.99963 * 17 16 13 47 47 H 0.97001 * 119.99646 * 359.97438 * 21 20 18 48 48 H 1.08999 * 110.36505 * 94.48525 * 26 12 11 49 49 H 1.09004 * 110.36544 * 216.80449 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0576 1.3183 5 6 0.7035 3.2721 1.2498 6 6 2.1901 3.4607 1.5622 7 6 1.9955 -0.7659 -1.1376 8 6 1.6316 -2.2426 -0.9703 9 1 0.5525 -2.3694 -0.8841 10 6 2.3635 -2.8610 0.2500 11 6 2.4524 -4.3562 -0.1216 12 7 2.3324 -4.4505 -1.5838 13 16 2.3450 -5.8525 -2.4649 14 8 3.0801 -6.7650 -1.6608 15 8 2.8190 -5.4578 -3.7451 16 6 0.6017 -6.3457 -2.5558 17 6 0.4803 -7.6449 -3.3548 18 6 -0.9681 -8.0543 -3.4309 19 1 -1.7261 -7.4487 -2.9564 20 6 -1.3255 -9.2020 -4.1061 21 7 -0.4024 -9.9398 -4.6834 22 14 -3.1207 -9.7098 -4.1998 23 1 -3.4487 -10.5843 -3.0453 24 1 -3.9801 -8.4993 -4.1638 25 1 -3.3604 -10.4496 -5.4650 26 6 2.2053 -3.0896 -2.1364 27 1 -0.3633 -1.0253 0.0708 28 1 -0.3634 0.5739 0.8524 29 1 -0.3633 0.4512 -0.9234 30 1 3.0797 1.3444 -0.1082 31 1 1.5611 1.9274 -0.8309 32 1 1.5339 1.3976 2.1804 33 1 0.3527 3.5827 0.2657 34 1 -0.0041 3.4116 2.0672 35 1 2.4599 3.7243 2.5848 36 1 2.8174 3.8951 0.7838 37 1 3.0798 -0.6610 -1.1755 38 1 1.5612 -0.3872 -2.0628 39 1 1.7796 -2.7239 1.1601 40 1 3.3591 -2.4321 0.3640 41 1 1.6393 -4.9051 0.3533 42 1 3.4124 -4.7612 0.1985 43 1 0.0273 -5.5610 -3.0482 44 1 0.2152 -6.5015 -1.5486 45 1 1.0545 -8.4295 -2.8621 46 1 0.8669 -7.4895 -4.3620 47 1 0.5298 -9.6762 -4.6344 48 1 3.1813 -2.7105 -2.4394 49 1 1.5170 -3.0861 -2.9817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072716644.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:13 Heat of formation + Delta-G solvation = -53.995241 kcal Electronic energy + Delta-G solvation = -26486.432265 eV Core-core repulsion = 22768.963036 eV Total energy + Delta-G solvation = -3717.469230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 2.73 seconds Orbital eigenvalues (eV) -39.42270 -38.22516 -36.67736 -36.15377 -35.51046 -34.24690 -31.61176 -31.01615 -29.51257 -28.04380 -26.60068 -25.06374 -23.03023 -22.78509 -22.39762 -21.70845 -20.66898 -20.22524 -18.60903 -17.63173 -16.88576 -16.61238 -16.38506 -15.79814 -15.60317 -15.47529 -14.90163 -14.69111 -13.89448 -13.80103 -13.74790 -13.63961 -13.40482 -13.28571 -13.07445 -12.82201 -12.66982 -12.11761 -12.08960 -11.93335 -11.84111 -11.78802 -11.68440 -11.62262 -11.35465 -11.15387 -11.06268 -11.02391 -10.74166 -10.59452 -10.53608 -10.48831 -10.34872 -10.31459 -10.10052 -8.99808 -8.68940 -8.58443 -8.45871 -6.47712 -4.20380 0.65995 2.98112 3.29517 3.38078 3.41663 3.52466 3.57471 4.23858 4.28452 4.32228 4.40285 4.46728 4.48697 4.59985 4.63642 4.75185 4.87519 5.01481 5.08091 5.14667 5.20052 5.20991 5.21385 5.27450 5.29199 5.38344 5.40089 5.46309 5.47891 5.52563 5.54932 5.60399 5.67424 5.68313 5.79189 5.82547 5.85209 5.95508 6.10267 6.20397 6.34853 6.46775 6.68844 6.71440 6.96883 7.07181 7.96553 8.30097 8.72756 9.51935 10.92142 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018005 B = 0.002334 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.759540 B =11991.996821 C =13019.767473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.536 5.536 3 C 0.085 3.915 4 C -0.144 4.144 5 C -0.185 4.185 6 C -0.179 4.179 7 C 0.064 3.936 8 C -0.098 4.098 9 H 0.087 0.913 10 C -0.107 4.107 11 C 0.117 3.883 12 N -1.018 6.018 13 S 2.606 3.394 14 O -0.962 6.962 15 O -0.962 6.962 16 C -0.583 4.583 17 C 0.014 3.986 18 C -0.599 4.599 19 H 0.055 0.945 20 C 0.015 3.985 21 N -0.906 5.906 22 Si 1.076 2.924 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.282 1.282 26 C 0.129 3.871 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.034 0.966 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.024 0.976 46 H 0.024 0.976 47 H 0.270 0.730 48 H 0.068 0.932 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 26.145 12.580 29.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.260 5.260 3 C -0.042 4.042 4 C -0.163 4.163 5 C -0.222 4.222 6 C -0.216 4.216 7 C -0.064 4.064 8 C -0.119 4.119 9 H 0.106 0.894 10 C -0.146 4.146 11 C -0.009 4.009 12 N -0.855 5.855 13 S 2.706 3.294 14 O -0.952 6.952 15 O -0.953 6.953 16 C -0.716 4.716 17 C -0.025 4.025 18 C -0.638 4.638 19 H 0.073 0.927 20 C -0.190 4.190 21 N -0.541 5.541 22 Si 0.904 3.096 23 H -0.212 1.212 24 H -0.214 1.214 25 H -0.208 1.208 26 C 0.002 3.998 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.131 0.869 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.715 24.278 12.009 27.339 hybrid contribution 0.026 1.767 0.078 1.769 sum 3.741 26.045 12.087 28.956 Atomic orbital electron populations 1.22458 0.87233 1.02451 1.00585 1.61928 1.08149 1.12889 1.43027 1.21679 0.99967 0.88021 0.94573 1.22292 1.04046 0.90185 0.99759 1.23079 0.93255 1.02966 1.02908 1.22958 0.96509 0.99489 1.02693 1.22066 1.00378 0.92567 0.91388 1.22463 1.00860 0.93163 0.95384 0.89449 1.22513 1.01133 0.92946 0.97977 1.21739 1.01713 0.97811 0.79609 1.58844 1.89972 1.20191 1.16457 1.05270 0.78946 0.72052 0.73153 1.93538 1.69675 1.62530 1.69467 1.93539 1.79606 1.81372 1.40791 1.30373 1.21143 1.10094 1.09959 1.19078 1.00725 0.88567 0.94107 1.21862 0.91099 1.11930 1.38959 0.92673 1.25984 1.06691 0.93246 0.93054 1.70752 1.02563 1.39446 1.41339 0.83440 0.73475 0.75761 0.76937 1.21244 1.21403 1.20765 1.21930 1.00777 0.81282 0.95766 0.91024 0.91174 0.95720 0.90402 0.94745 0.86916 0.89050 0.88891 0.88726 0.88898 0.90283 0.94326 0.89994 0.90708 0.91796 0.91251 0.86253 0.86178 0.95770 0.95793 0.91900 0.91348 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.17 60.07 0.55 0.70 16 2 N -0.54 -3.96 4.59 -242.91 -1.11 -5.07 16 3 C 0.09 0.56 5.24 -3.82 -0.02 0.54 16 4 C -0.14 -0.89 4.74 -90.63 -0.43 -1.32 16 5 C -0.19 -1.04 10.18 -26.70 -0.27 -1.31 16 6 C -0.18 -0.97 10.25 -26.70 -0.27 -1.25 16 7 C 0.06 0.49 4.40 -3.83 -0.02 0.47 16 8 C -0.10 -0.87 2.91 -88.35 -0.26 -1.13 16 9 H 0.09 0.78 6.54 -51.93 -0.34 0.44 16 10 C -0.11 -0.96 6.24 -24.89 -0.16 -1.11 16 11 C 0.12 1.36 6.89 -3.07 -0.02 1.34 16 12 N -1.02 -14.21 3.62 -111.30 -0.40 -14.61 16 13 S 2.61 48.10 5.65 -107.50 -0.61 47.49 16 14 O -0.96 -20.38 17.60 -57.54 -1.01 -21.39 16 15 O -0.96 -20.25 17.60 -57.54 -1.01 -21.26 16 16 C -0.58 -11.48 6.12 37.16 0.23 -11.25 16 17 C 0.01 0.37 4.29 -27.88 -0.12 0.25 16 18 C -0.60 -16.95 9.11 -34.44 -0.31 -17.26 16 19 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 20 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 21 N -0.91 -27.88 13.65 55.43 0.76 -27.12 16 22 Si 1.08 25.05 29.90 -169.99 -5.08 19.97 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.31 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 C 0.13 1.47 6.36 -2.41 -0.02 1.45 16 27 H 0.07 0.52 6.45 -51.93 -0.33 0.19 16 28 H 0.07 0.47 7.16 -51.93 -0.37 0.10 16 29 H 0.02 0.18 8.14 -51.92 -0.42 -0.25 16 30 H 0.08 0.50 7.93 -51.93 -0.41 0.09 16 31 H 0.03 0.23 7.85 -51.93 -0.41 -0.18 16 32 H 0.11 0.78 8.14 -51.92 -0.42 0.35 16 33 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.57 7.90 -51.93 -0.41 0.16 16 38 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.64 8.02 -51.93 -0.42 0.22 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 44 H 0.12 2.17 8.14 -51.92 -0.42 1.75 16 45 H 0.02 0.65 8.01 -51.93 -0.42 0.23 16 46 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 47 H 0.27 8.32 7.22 -40.82 -0.29 8.02 16 48 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -35.01 401.89 -12.56 -47.58 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.93 Total: -2.09 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -1.21 Total: -29.55 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.76 Total: -46.81 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -2.03 Total: -42.65 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -5.08 Total: 19.97 kcal Atomic # 16 Polarization: 48.10 SS G_CDS: -0.61 Total: 47.49 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.01 -12.56 -47.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072716644.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.420 kcal (2) G-P(sol) polarization free energy of solvation -35.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.73 seconds