Wall clock time and date at job start Tue Mar 31 2020 18:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00311 * 2 1 4 4 C 1.53001 * 109.47056 * 293.95783 * 3 2 1 5 5 C 1.53006 * 117.49597 * 243.61890 * 4 3 2 6 6 C 1.52998 * 117.49560 * 174.99845 * 4 3 2 7 7 C 1.46906 * 111.00193 * 123.95458 * 2 1 3 8 8 C 1.53000 * 109.46854 * 66.04142 * 7 2 1 9 9 H 1.08998 * 110.88804 * 308.88538 * 8 7 2 10 10 C 1.55164 * 111.00074 * 72.80991 * 8 7 2 11 11 C 1.54333 * 103.01758 * 153.38161 * 10 8 7 12 12 N 1.47023 * 107.26580 * 338.13179 * 11 10 8 13 13 S 1.65603 * 125.64458 * 178.85256 * 12 11 10 14 14 O 1.42102 * 104.27650 * 153.62639 * 13 12 11 15 15 O 1.42098 * 104.27898 * 25.76698 * 13 12 11 16 16 C 1.81408 * 104.44779 * 269.69405 * 13 12 11 17 17 C 1.53000 * 109.46799 * 180.02562 * 16 13 12 18 18 C 1.50703 * 109.46912 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99751 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00001 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99923 * 180.02562 * 20 18 17 22 22 Si 1.86804 * 120.00006 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47093 * 90.00088 * 22 20 18 24 24 H 1.48500 * 109.47049 * 210.00797 * 22 20 18 25 25 H 1.48504 * 109.47189 * 330.00185 * 22 20 18 26 26 C 1.47422 * 108.70292 * 358.59227 * 12 11 10 27 27 H 1.09003 * 109.46889 * 296.04703 * 1 2 3 28 28 H 1.08996 * 109.47354 * 56.04096 * 1 2 3 29 29 H 1.08998 * 109.47327 * 176.05136 * 1 2 3 30 30 H 1.09002 * 109.47040 * 53.95535 * 3 2 1 31 31 H 1.09002 * 109.47624 * 173.95088 * 3 2 1 32 32 H 1.08994 * 115.55169 * 29.32738 * 4 3 2 33 33 H 1.08999 * 117.49772 * 359.97438 * 5 4 3 34 34 H 1.08993 * 117.49697 * 145.01538 * 5 4 3 35 35 H 1.09003 * 117.49762 * 214.97516 * 6 4 3 36 36 H 1.08996 * 117.50664 * 359.97438 * 6 4 3 37 37 H 1.09000 * 109.46666 * 306.04591 * 7 2 1 38 38 H 1.08999 * 109.47012 * 186.04774 * 7 2 1 39 39 H 1.09001 * 110.71469 * 271.93349 * 10 8 7 40 40 H 1.08992 * 110.72292 * 35.02972 * 10 8 7 41 41 H 1.09008 * 109.98558 * 218.66545 * 11 10 8 42 42 H 1.08998 * 109.78282 * 97.50014 * 11 10 8 43 43 H 1.09001 * 109.46823 * 60.00309 * 16 13 12 44 44 H 1.08992 * 109.47429 * 300.00345 * 16 13 12 45 45 H 1.09002 * 109.47398 * 300.00340 * 17 16 13 46 46 H 1.09001 * 109.47194 * 60.00520 * 17 16 13 47 47 H 0.97000 * 119.99684 * 180.02562 * 21 20 18 48 48 H 1.09001 * 110.36227 * 143.19032 * 26 12 11 49 49 H 1.08999 * 110.36840 * 265.40258 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.7807 2.4775 -2.2369 6 6 1.9901 3.5373 -1.4670 7 6 1.9955 -0.7660 1.1376 8 6 1.6314 -2.2426 0.9703 9 1 0.5658 -2.3602 0.7732 10 6 2.4809 -2.9016 -0.1484 11 6 2.5147 -4.3867 0.2698 12 7 2.2329 -4.4405 1.7118 13 16 2.1325 -5.8185 2.6248 14 8 2.4730 -5.3946 3.9376 15 8 2.9363 -6.7602 1.9274 16 6 0.3828 -6.2899 2.5419 17 6 0.1590 -7.5650 3.3573 18 6 -1.2945 -7.9571 3.2880 19 1 -1.9890 -7.3570 2.7189 20 6 -1.7375 -9.0818 3.9511 21 7 -3.0059 -9.4241 3.8902 22 14 -0.5360 -10.1201 4.9349 23 1 -0.4800 -9.6215 6.3326 24 1 -0.9866 -11.5351 4.9317 25 1 0.8138 -10.0290 4.3225 26 6 2.0606 -3.0643 2.2114 27 1 -0.3633 0.4513 0.9233 28 1 -0.3634 0.5740 -0.8523 29 1 -0.3634 -1.0252 -0.0708 30 1 1.5612 1.9273 0.8309 31 1 3.0798 1.3444 0.1083 32 1 0.7107 1.7130 -1.7888 33 1 3.7960 2.2655 -1.9019 34 1 2.6161 2.4092 -3.3122 35 1 1.3055 4.1664 -2.0358 36 1 2.4850 4.0224 -0.6256 37 1 1.5611 -0.3872 2.0628 38 1 3.0797 -0.6611 1.1756 39 1 1.9992 -2.7827 -1.1190 40 1 3.4873 -2.4835 -0.1653 41 1 3.4997 -4.8081 0.0687 42 1 1.7530 -4.9417 -0.2779 43 1 0.1034 -6.4686 1.5035 44 1 -0.2299 -5.4861 2.9498 45 1 0.7717 -8.3692 2.9498 46 1 0.4382 -7.3860 4.3957 47 1 -3.3176 -10.2152 4.3570 48 1 1.2832 -3.0325 2.9748 49 1 3.0008 -2.6858 2.6125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072716647.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:33 Heat of formation + Delta-G solvation = -44.373604 kcal Electronic energy + Delta-G solvation = -26496.925250 eV Core-core repulsion = 22779.873246 eV Total energy + Delta-G solvation = -3717.052004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.40745 -38.20042 -36.71467 -36.18644 -35.54971 -33.94200 -31.65281 -31.47616 -29.51527 -27.94416 -26.70227 -25.94802 -23.09469 -22.71827 -22.32175 -21.09537 -20.55694 -20.25847 -18.64105 -17.66048 -17.03958 -16.71578 -16.33723 -15.61737 -15.55840 -15.46873 -14.88756 -14.66091 -14.31375 -13.87490 -13.78406 -13.69064 -13.38670 -13.22922 -13.12979 -12.79212 -12.73445 -12.15729 -11.90942 -11.89988 -11.82105 -11.76625 -11.67348 -11.61744 -11.35790 -11.25061 -11.18954 -11.10660 -11.02923 -10.70462 -10.61456 -10.44232 -10.35470 -10.15573 -9.73376 -9.42237 -8.79683 -8.66477 -8.63981 -6.16761 -4.17906 0.62776 2.94420 3.26483 3.27754 3.33777 3.38246 3.61717 4.20660 4.27456 4.29857 4.35740 4.39818 4.52918 4.62292 4.64772 4.74463 4.94566 4.96247 5.09957 5.14835 5.15372 5.19959 5.20619 5.24320 5.29728 5.37964 5.39728 5.45667 5.50209 5.52009 5.54044 5.58828 5.65668 5.72553 5.79278 5.82366 5.88013 5.96059 6.09659 6.20116 6.29650 6.45195 6.69406 6.72918 6.81985 6.94289 7.54725 8.36550 8.84318 9.42935 10.95591 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023023 B = 0.002316 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.907191 B =12089.243342 C =12734.393255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.536 5.536 3 C 0.086 3.914 4 C -0.147 4.147 5 C -0.174 4.174 6 C -0.184 4.184 7 C 0.065 3.935 8 C -0.099 4.099 9 H 0.089 0.911 10 C -0.109 4.109 11 C 0.117 3.883 12 N -1.017 6.017 13 S 2.604 3.396 14 O -0.962 6.962 15 O -0.961 6.961 16 C -0.582 4.582 17 C -0.007 4.007 18 C -0.519 4.519 19 H 0.077 0.923 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.870 3.130 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 C 0.128 3.872 27 H 0.026 0.974 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.032 0.968 46 H 0.028 0.972 47 H 0.266 0.734 48 H 0.075 0.925 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.485 24.495 -10.826 28.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.260 5.260 3 C -0.042 4.042 4 C -0.165 4.165 5 C -0.211 4.211 6 C -0.222 4.222 7 C -0.063 4.063 8 C -0.119 4.119 9 H 0.108 0.892 10 C -0.148 4.148 11 C -0.008 4.008 12 N -0.854 5.854 13 S 2.704 3.296 14 O -0.953 6.953 15 O -0.952 6.952 16 C -0.715 4.715 17 C -0.047 4.047 18 C -0.558 4.558 19 H 0.096 0.904 20 C -0.132 4.132 21 N -0.533 5.533 22 Si 0.696 3.304 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.186 1.186 26 C 0.002 3.998 27 H 0.045 0.955 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.282 23.644 -10.702 28.299 hybrid contribution -0.555 -0.073 1.009 1.154 sum 10.727 23.570 -9.693 27.651 Atomic orbital electron populations 1.22514 0.87328 1.02674 1.00566 1.61899 1.08058 1.12959 1.43081 1.21672 0.99817 0.87911 0.94801 1.22295 1.00148 0.96012 0.98050 1.22991 0.96592 1.03372 0.98159 1.22981 1.04136 0.91766 1.03310 1.22069 1.00315 0.92565 0.91381 1.22438 1.01063 0.93151 0.95253 0.89246 1.22545 1.00420 0.93028 0.98768 1.21740 1.01177 0.97903 0.80000 1.58806 1.87426 1.19865 1.19298 1.05300 0.78964 0.72186 0.73195 1.93542 1.83285 1.80800 1.37674 1.93541 1.66531 1.61061 1.74046 1.30334 1.21110 1.09753 1.10303 1.19415 1.00859 0.89999 0.94396 1.20843 0.91086 1.11023 1.32807 0.90441 1.24993 0.95162 0.97103 0.95914 1.69881 1.14250 1.26170 1.43045 0.86920 0.82240 0.80053 0.81211 1.19670 1.20735 1.18616 1.21892 1.01082 0.80935 0.95883 0.95537 0.91264 0.90780 0.94482 0.90679 0.87353 0.88811 0.88924 0.88851 0.88928 0.94274 0.90341 0.89894 0.90846 0.91236 0.91664 0.85695 0.85803 0.94947 0.95413 0.92386 0.90684 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.17 60.06 0.55 0.67 16 2 N -0.54 -3.98 4.71 -242.91 -1.14 -5.12 16 3 C 0.09 0.57 5.24 -3.82 -0.02 0.55 16 4 C -0.15 -0.93 5.68 -90.62 -0.51 -1.45 16 5 C -0.17 -1.03 10.18 -26.73 -0.27 -1.30 16 6 C -0.18 -1.02 10.25 -26.73 -0.27 -1.29 16 7 C 0.06 0.49 4.41 -3.82 -0.02 0.47 16 8 C -0.10 -0.86 2.99 -88.47 -0.26 -1.12 16 9 H 0.09 0.78 6.30 -51.93 -0.33 0.45 16 10 C -0.11 -0.95 6.37 -24.89 -0.16 -1.10 16 11 C 0.12 1.32 6.90 -3.06 -0.02 1.29 16 12 N -1.02 -13.59 3.62 -111.41 -0.40 -14.00 16 13 S 2.60 45.65 5.65 -107.50 -0.61 45.05 16 14 O -0.96 -19.19 17.61 -57.54 -1.01 -20.20 16 15 O -0.96 -19.37 17.60 -57.54 -1.01 -20.38 16 16 C -0.58 -10.83 6.12 37.16 0.23 -10.61 16 17 C -0.01 -0.18 4.05 -27.88 -0.11 -0.29 16 18 C -0.52 -14.57 9.66 -34.44 -0.33 -14.91 16 19 H 0.08 2.28 7.99 -52.49 -0.42 1.87 16 20 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 21 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 22 Si 0.87 21.63 27.47 -169.99 -4.67 16.96 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 26 C 0.13 1.40 6.36 -2.53 -0.02 1.39 16 27 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.07 0.44 6.22 -51.93 -0.32 0.12 16 29 H 0.07 0.54 6.33 -51.93 -0.33 0.21 16 30 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 31 H 0.07 0.48 7.66 -51.93 -0.40 0.08 16 32 H 0.11 0.72 6.36 -51.93 -0.33 0.39 16 33 H 0.09 0.53 8.03 -51.93 -0.42 0.12 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 38 H 0.08 0.56 7.76 -51.93 -0.40 0.15 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.60 7.91 -51.93 -0.41 0.19 16 41 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.12 2.13 8.14 -51.92 -0.42 1.71 16 44 H 0.12 2.10 8.14 -51.93 -0.42 1.68 16 45 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 46 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.70 8.04 -51.93 -0.42 0.29 16 LS Contribution 397.54 15.07 5.99 5.99 Total: -1.00 -34.19 397.54 -12.19 -46.37 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -8.78 Total: -2.56 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -1.32 Total: -25.74 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: -0.77 Total: -45.49 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: -2.03 Total: -40.58 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.96 kcal Atomic # 16 Polarization: 45.65 SS G_CDS: -0.61 Total: 45.05 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.19 -12.19 -46.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072716647.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.000 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds