Wall clock time and date at job start Tue Mar 31 2020 15:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46619 * 2 1 4 4 C 1.53003 * 109.47475 * 120.00278 * 2 1 3 5 5 O 1.45193 * 109.46746 * 175.00231 * 4 2 1 6 6 C 1.34645 * 116.99381 * 179.97438 * 5 4 2 7 7 O 1.21508 * 120.00059 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99769 * 179.97438 * 6 5 4 9 9 C 1.47077 * 120.88247 * 180.02562 * 8 6 5 10 10 C 1.53246 * 108.52284 * 128.79469 * 9 8 6 11 11 N 1.46898 * 109.33920 * 53.82904 * 10 9 8 12 12 C 1.46897 * 111.00122 * 172.74589 * 11 10 9 13 13 C 1.52995 * 109.47298 * 170.00105 * 12 11 10 14 14 C 1.52996 * 109.47248 * 180.02562 * 13 12 11 15 15 S 1.81004 * 109.47304 * 180.02562 * 14 13 12 16 16 C 1.76196 * 99.99888 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00506 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99941 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00132 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99684 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47397 * 89.99930 * 20 18 16 22 22 H 1.48504 * 109.46683 * 210.00039 * 20 18 16 23 23 H 1.48498 * 109.47170 * 329.99460 * 20 18 16 24 24 C 1.46897 * 111.27265 * 296.89822 * 11 10 9 25 25 C 1.47081 * 120.88219 * 359.97438 * 8 6 5 26 26 H 1.08996 * 109.47137 * 299.99108 * 1 2 3 27 27 H 1.08997 * 109.47468 * 59.99994 * 1 2 3 28 28 H 1.09007 * 109.46651 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47152 * 240.00165 * 2 1 3 30 30 H 1.09002 * 109.46642 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47206 * 300.00166 * 3 2 1 32 32 H 1.08993 * 109.47133 * 60.00497 * 3 2 1 33 33 H 1.08999 * 109.47030 * 54.99687 * 4 2 1 34 34 H 1.08995 * 109.46582 * 295.00065 * 4 2 1 35 35 H 1.09006 * 109.62659 * 9.08877 * 9 8 6 36 36 H 1.08996 * 109.78951 * 248.60011 * 9 8 6 37 37 H 1.08997 * 109.49034 * 173.79182 * 10 9 8 38 38 H 1.09005 * 109.49043 * 293.87421 * 10 9 8 39 39 H 1.09004 * 109.47340 * 290.00796 * 12 11 10 40 40 H 1.08997 * 109.46806 * 50.00180 * 12 11 10 41 41 H 1.09001 * 109.47025 * 300.00392 * 13 12 11 42 42 H 1.08997 * 109.47132 * 60.00274 * 13 12 11 43 43 H 1.09001 * 109.47167 * 299.99986 * 14 13 12 44 44 H 1.09002 * 109.47567 * 59.99965 * 14 13 12 45 45 H 0.97003 * 119.99797 * 179.97438 * 19 18 16 46 46 H 1.08999 * 109.49205 * 303.14494 * 24 11 10 47 47 H 1.08997 * 109.51913 * 183.07577 * 24 11 10 48 48 H 1.08997 * 109.62944 * 350.90922 * 25 8 6 49 49 H 1.08999 * 109.63243 * 111.49320 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4872 -0.8254 1.1909 6 6 4.0979 -1.4382 2.2226 7 8 3.4396 -1.8745 3.1460 8 7 5.4393 -1.5686 2.2305 9 6 6.1264 -2.2350 3.3472 10 6 7.0618 -3.3051 2.7742 11 7 7.9486 -2.6922 1.7762 12 6 8.9739 -3.6438 1.3279 13 6 9.7155 -3.0639 0.1218 14 6 10.7830 -4.0554 -0.3454 15 16 11.6609 -3.3690 -1.7718 16 6 12.7953 -4.6786 -2.0920 17 1 12.7889 -5.5626 -1.4715 18 6 13.6974 -4.5743 -3.1418 19 7 14.5452 -5.5524 -3.3807 20 14 13.7091 -3.0451 -4.2146 21 1 14.6433 -2.0441 -3.6397 22 1 14.1521 -3.4056 -5.5854 23 1 12.3411 -2.4701 -4.2718 24 6 7.1852 -2.1654 0.6370 25 6 6.2548 -1.0493 1.1221 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6055 -1.7198 1.2951 34 1 1.7518 -0.1584 2.1369 35 1 5.3916 -2.7036 4.0019 36 1 6.7070 -1.5053 3.9114 37 1 7.6602 -3.7334 3.5782 38 1 6.4707 -4.0900 2.3023 39 1 9.6814 -3.8239 2.1374 40 1 8.4989 -4.5832 1.0450 41 1 9.0080 -2.8840 -0.6876 42 1 10.1906 -2.1246 0.4047 43 1 11.4906 -4.2357 0.4639 44 1 10.3077 -4.9946 -0.6285 45 1 15.1754 -5.4796 -4.1146 46 1 6.5924 -2.9662 0.1949 47 1 7.8728 -1.7673 -0.1092 48 1 5.6050 -0.7340 0.3058 49 1 6.8482 -0.2034 1.4691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074989813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:04 Heat of formation + Delta-G solvation = -91.659108 kcal Electronic energy + Delta-G solvation = -25897.085578 eV Core-core repulsion = 22177.983121 eV Total energy + Delta-G solvation = -3719.102457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.93829 -39.16056 -37.36399 -35.56083 -35.38798 -32.74081 -32.45205 -31.38132 -28.43239 -27.62610 -26.87487 -25.75777 -24.61270 -24.16864 -22.32899 -20.78601 -20.77217 -20.03998 -18.31679 -17.54783 -17.35370 -16.90487 -15.85183 -15.48938 -15.36085 -15.18694 -15.04947 -14.97815 -14.70692 -14.55476 -14.02786 -13.94326 -13.55817 -13.05521 -12.93927 -12.87305 -12.75823 -12.57850 -12.19562 -12.12525 -11.89907 -11.68053 -11.59821 -11.58124 -11.47066 -11.35508 -11.19695 -11.07706 -10.95903 -10.82346 -10.71039 -10.43927 -10.17307 -9.79941 -9.16450 -9.02405 -8.59333 -8.46908 -6.96788 -6.30125 -4.02717 1.79957 2.54276 2.97627 3.28584 3.43118 3.45580 3.52837 3.74838 4.29547 4.29773 4.36063 4.53365 4.63605 4.67628 4.76199 4.82286 4.94520 4.96428 5.00953 5.03507 5.08626 5.09813 5.18929 5.20729 5.23646 5.36095 5.38710 5.41410 5.44893 5.47614 5.56669 5.58502 5.59661 5.70935 5.74701 5.80946 5.85084 5.94438 6.05055 6.09696 6.14496 6.40767 6.56057 6.82036 6.85502 7.06181 7.93538 7.99116 8.42543 9.15610 10.79316 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.002028 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.102341 B =13806.112796 C =15070.850081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.148 4.148 4 C 0.091 3.909 5 O -0.366 6.366 6 C 0.651 3.349 7 O -0.578 6.578 8 N -0.595 5.595 9 C 0.133 3.867 10 C 0.040 3.960 11 N -0.537 5.537 12 C 0.060 3.940 13 C -0.105 4.105 14 C -0.082 4.082 15 S -0.215 6.215 16 C -0.503 4.503 17 H 0.088 0.912 18 C 0.091 3.909 19 N -0.881 5.881 20 Si 0.862 3.138 21 H -0.268 1.268 22 H -0.276 1.276 23 H -0.238 1.238 24 C 0.030 3.970 25 C 0.117 3.883 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.035 0.965 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.270 0.730 46 H 0.039 0.961 47 H 0.103 0.897 48 H 0.095 0.905 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.693 11.758 10.545 30.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.205 4.205 4 C 0.016 3.984 5 O -0.280 6.280 6 C 0.406 3.594 7 O -0.468 6.468 8 N -0.336 5.336 9 C 0.012 3.988 10 C -0.089 4.089 11 N -0.262 5.262 12 C -0.069 4.069 13 C -0.143 4.143 14 C -0.231 4.231 15 S 0.013 5.987 16 C -0.650 4.650 17 H 0.106 0.894 18 C -0.117 4.117 19 N -0.518 5.518 20 Si 0.687 3.313 21 H -0.193 1.193 22 H -0.201 1.201 23 H -0.162 1.162 24 C -0.098 4.098 25 C -0.006 4.006 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.110 0.890 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.057 0.943 47 H 0.121 0.879 48 H 0.113 0.887 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.717 12.950 10.367 30.603 hybrid contribution 0.060 -1.501 -0.302 1.533 sum -25.657 11.449 10.065 29.844 Atomic orbital electron populations 1.21776 0.93515 1.02390 1.02633 1.21195 0.95979 0.97062 0.97328 1.21834 1.01937 0.94853 1.01866 1.23093 0.74870 1.01214 0.99176 1.86210 1.24330 1.73094 1.44365 1.17983 0.82997 0.77535 0.80906 1.90977 1.64276 1.53987 1.37523 1.46995 1.02295 1.60331 1.23946 1.21763 0.94596 0.95042 0.87416 1.22515 0.94558 0.95352 0.96472 1.62025 1.14092 1.37004 1.13047 1.22193 0.93478 0.93044 0.98141 1.21509 0.97174 0.99331 0.96321 1.23009 0.99281 1.00561 1.00293 1.84127 1.45057 1.31942 1.37586 1.22120 1.19496 1.03643 1.19766 0.89432 1.24809 0.93953 0.96604 0.96355 1.69940 1.19802 1.31853 1.30217 0.86659 0.81143 0.83270 0.80194 1.19344 1.20134 1.16188 1.22670 0.96175 0.97225 0.93745 1.21897 0.93246 0.96582 0.88854 0.92233 0.91510 0.92228 0.89880 0.91833 0.92311 0.92683 0.91244 0.91182 0.88440 0.90092 0.88974 0.94251 0.90182 0.94646 0.91276 0.90454 0.91293 0.91573 0.91971 0.94260 0.87883 0.88713 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.19 37.16 0.34 -0.34 16 2 C -0.10 -0.60 3.16 -90.61 -0.29 -0.88 16 3 C -0.15 -0.88 9.09 37.16 0.34 -0.54 16 4 C 0.09 0.76 4.85 37.16 0.18 0.94 16 5 O -0.37 -3.78 8.44 -40.34 -0.34 -4.12 16 6 C 0.65 7.83 8.44 54.05 0.46 8.29 16 7 O -0.58 -8.41 15.58 -19.28 -0.30 -8.71 16 8 N -0.59 -6.22 3.01 -178.28 -0.54 -6.76 16 9 C 0.13 1.24 6.60 -3.60 -0.02 1.22 16 10 C 0.04 0.37 5.58 -3.70 -0.02 0.35 16 11 N -0.54 -5.71 4.78 -234.35 -1.12 -6.83 16 12 C 0.06 0.71 5.27 -3.83 -0.02 0.69 16 13 C -0.10 -1.49 4.47 -26.74 -0.12 -1.61 16 14 C -0.08 -1.53 5.67 37.16 0.21 -1.32 16 15 S -0.21 -5.12 19.41 -107.50 -2.09 -7.21 16 16 C -0.50 -14.46 10.04 30.94 0.31 -14.14 16 17 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 18 C 0.09 2.64 5.50 -17.43 -0.10 2.55 16 19 N -0.88 -26.59 13.97 55.49 0.78 -25.81 16 20 Si 0.86 21.33 27.74 -169.99 -4.71 16.62 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.24 -5.73 6.74 56.52 0.38 -5.35 16 24 C 0.03 0.31 5.04 -3.72 -0.02 0.29 16 25 C 0.12 1.06 6.61 -3.62 -0.02 1.04 16 26 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.27 8.14 -51.92 -0.42 -0.16 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.44 7.82 -51.93 -0.41 0.03 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.10 0.95 7.06 -51.93 -0.37 0.58 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.74 8.11 -51.93 -0.42 0.32 16 38 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 41 H 0.07 0.97 6.18 -51.93 -0.32 0.65 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.29 8.14 -51.91 -0.42 0.87 16 44 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.10 1.05 5.73 -51.93 -0.30 0.75 16 48 H 0.09 0.79 6.98 -51.93 -0.36 0.43 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 399.97 15.07 6.03 6.03 Total: -1.00 -32.61 399.97 -10.00 -42.62 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -8.94 Total: -2.35 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 1.23 Total: -3.48 kcal Atomic # 7 Polarization: -38.52 SS G_CDS: -0.88 Total: -39.40 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.64 Total: -12.82 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.71 Total: 16.62 kcal Atomic # 16 Polarization: -5.12 SS G_CDS: -2.09 Total: -7.21 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.61 -10.00 -42.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074989813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.041 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds