Wall clock time and date at job start Tue Mar 31 2020 15:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46619 * 2 1 4 4 C 1.53003 * 109.47475 * 120.00278 * 2 1 3 5 5 O 1.45193 * 109.46746 * 175.00231 * 4 2 1 6 6 C 1.34645 * 116.99381 * 179.97438 * 5 4 2 7 7 O 1.21508 * 120.00059 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99769 * 179.97438 * 6 5 4 9 9 C 1.47077 * 120.88247 * 180.02562 * 8 6 5 10 10 C 1.53246 * 108.52284 * 128.79469 * 9 8 6 11 11 N 1.46898 * 109.33920 * 53.82904 * 10 9 8 12 12 C 1.46897 * 111.00122 * 172.74589 * 11 10 9 13 13 C 1.52995 * 109.47298 * 170.00105 * 12 11 10 14 14 C 1.52996 * 109.47248 * 180.02562 * 13 12 11 15 15 S 1.81004 * 109.47304 * 180.02562 * 14 13 12 16 16 C 1.76196 * 99.99888 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00506 * 359.97438 * 16 15 14 18 18 C 1.38806 * 119.99941 * 179.97438 * 16 15 14 19 19 N 1.31631 * 120.00132 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99684 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47397 * 89.99930 * 20 18 16 22 22 H 1.48504 * 109.46683 * 210.00039 * 20 18 16 23 23 H 1.48498 * 109.47170 * 329.99460 * 20 18 16 24 24 C 1.46897 * 111.27265 * 296.89822 * 11 10 9 25 25 C 1.47081 * 120.88219 * 359.97438 * 8 6 5 26 26 H 1.08996 * 109.47137 * 299.99108 * 1 2 3 27 27 H 1.08997 * 109.47468 * 59.99994 * 1 2 3 28 28 H 1.09007 * 109.46651 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47152 * 240.00165 * 2 1 3 30 30 H 1.09002 * 109.46642 * 180.02562 * 3 2 1 31 31 H 1.08997 * 109.47206 * 300.00166 * 3 2 1 32 32 H 1.08993 * 109.47133 * 60.00497 * 3 2 1 33 33 H 1.08999 * 109.47030 * 54.99687 * 4 2 1 34 34 H 1.08995 * 109.46582 * 295.00065 * 4 2 1 35 35 H 1.09006 * 109.62659 * 9.08877 * 9 8 6 36 36 H 1.08996 * 109.78951 * 248.60011 * 9 8 6 37 37 H 1.08997 * 109.49034 * 173.79182 * 10 9 8 38 38 H 1.09005 * 109.49043 * 293.87421 * 10 9 8 39 39 H 1.09004 * 109.47340 * 290.00796 * 12 11 10 40 40 H 1.08997 * 109.46806 * 50.00180 * 12 11 10 41 41 H 1.09001 * 109.47025 * 300.00392 * 13 12 11 42 42 H 1.08997 * 109.47132 * 60.00274 * 13 12 11 43 43 H 1.09001 * 109.47167 * 299.99986 * 14 13 12 44 44 H 1.09002 * 109.47567 * 59.99965 * 14 13 12 45 45 H 0.97003 * 119.99797 * 179.97438 * 19 18 16 46 46 H 1.08999 * 109.49205 * 303.14494 * 24 11 10 47 47 H 1.08997 * 109.51913 * 183.07577 * 24 11 10 48 48 H 1.08997 * 109.62944 * 350.90922 * 25 8 6 49 49 H 1.08999 * 109.63243 * 111.49320 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4872 -0.8254 1.1909 6 6 4.0979 -1.4382 2.2226 7 8 3.4396 -1.8745 3.1460 8 7 5.4393 -1.5686 2.2305 9 6 6.1264 -2.2350 3.3472 10 6 7.0618 -3.3051 2.7742 11 7 7.9486 -2.6922 1.7762 12 6 8.9739 -3.6438 1.3279 13 6 9.7155 -3.0639 0.1218 14 6 10.7830 -4.0554 -0.3454 15 16 11.6609 -3.3690 -1.7718 16 6 12.7953 -4.6786 -2.0920 17 1 12.7889 -5.5626 -1.4715 18 6 13.6974 -4.5743 -3.1418 19 7 14.5452 -5.5524 -3.3807 20 14 13.7091 -3.0451 -4.2146 21 1 14.6433 -2.0441 -3.6397 22 1 14.1521 -3.4056 -5.5854 23 1 12.3411 -2.4701 -4.2718 24 6 7.1852 -2.1654 0.6370 25 6 6.2548 -1.0493 1.1221 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6055 -1.7198 1.2951 34 1 1.7518 -0.1584 2.1369 35 1 5.3916 -2.7036 4.0019 36 1 6.7070 -1.5053 3.9114 37 1 7.6602 -3.7334 3.5782 38 1 6.4707 -4.0900 2.3023 39 1 9.6814 -3.8239 2.1374 40 1 8.4989 -4.5832 1.0450 41 1 9.0080 -2.8840 -0.6876 42 1 10.1906 -2.1246 0.4047 43 1 11.4906 -4.2357 0.4639 44 1 10.3077 -4.9946 -0.6285 45 1 15.1754 -5.4796 -4.1146 46 1 6.5924 -2.9662 0.1949 47 1 7.8728 -1.7673 -0.1092 48 1 5.6050 -0.7340 0.3058 49 1 6.8482 -0.2034 1.4691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074989813.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:03 Heat of formation + Delta-G solvation = -111.705105 kcal Electronic energy + Delta-G solvation = -25897.954838 eV Core-core repulsion = 22177.983121 eV Total energy + Delta-G solvation = -3719.971717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.79061 -39.98887 -38.15394 -36.52728 -36.01537 -34.67791 -33.83410 -32.18756 -29.35575 -28.05158 -27.98243 -27.54036 -25.72107 -24.97469 -23.23921 -21.86992 -21.31812 -20.84045 -19.60834 -19.13405 -18.24404 -17.71842 -17.10994 -16.78330 -16.51545 -16.24810 -16.06695 -15.79618 -15.56955 -15.45607 -15.18489 -14.91010 -14.81490 -14.29484 -13.96149 -13.74081 -13.50521 -13.42421 -13.38805 -13.14347 -12.99506 -12.95960 -12.83821 -12.49657 -12.42805 -12.17352 -12.11348 -12.08391 -11.98920 -11.75610 -11.66372 -11.57504 -11.51248 -11.48192 -11.15208 -10.54877 -9.99739 -9.32856 -8.97224 -8.51115 -6.22089 1.02205 1.14057 1.33547 1.48746 1.63093 1.75982 2.25680 2.67911 2.72226 2.86732 2.87052 3.72941 3.80876 3.83651 3.89098 3.93767 4.02888 4.11499 4.20154 4.20871 4.27543 4.34260 4.40042 4.45756 4.50838 4.53685 4.61429 4.65762 4.71263 4.78801 4.81385 4.83528 4.91267 4.97467 4.98461 5.00639 5.17473 5.18570 5.19252 5.26230 5.29559 5.39046 5.43267 5.70162 5.92041 6.01070 6.10808 6.21448 6.92880 7.11159 8.61903 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016832 B = 0.002028 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.102341 B =13806.112796 C =15070.850081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 C -0.146 4.146 4 C 0.087 3.913 5 O -0.365 6.365 6 C 0.647 3.353 7 O -0.609 6.609 8 N -0.594 5.594 9 C 0.134 3.866 10 C 0.044 3.956 11 N -0.537 5.537 12 C 0.069 3.931 13 C -0.091 4.091 14 C -0.071 4.071 15 S -0.216 6.216 16 C -0.524 4.524 17 H 0.049 0.951 18 C 0.035 3.965 19 N -0.923 5.923 20 Si 0.927 3.073 21 H -0.261 1.261 22 H -0.265 1.265 23 H -0.226 1.226 24 C 0.031 3.969 25 C 0.121 3.879 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.109 0.891 38 H 0.030 0.970 39 H 0.086 0.914 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.276 0.724 46 H 0.031 0.969 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.885 13.759 10.406 31.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.204 4.204 4 C 0.013 3.987 5 O -0.279 6.279 6 C 0.402 3.598 7 O -0.501 6.501 8 N -0.335 5.335 9 C 0.013 3.987 10 C -0.084 4.084 11 N -0.262 5.262 12 C -0.060 4.060 13 C -0.130 4.130 14 C -0.220 4.220 15 S 0.012 5.988 16 C -0.671 4.671 17 H 0.067 0.933 18 C -0.169 4.169 19 N -0.561 5.561 20 Si 0.748 3.252 21 H -0.186 1.186 22 H -0.190 1.190 23 H -0.150 1.150 24 C -0.097 4.097 25 C -0.001 4.001 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.127 0.873 38 H 0.048 0.952 39 H 0.105 0.895 40 H 0.052 0.948 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.049 0.951 47 H 0.123 0.877 48 H 0.120 0.880 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.910 14.953 10.224 32.439 hybrid contribution 0.381 -2.199 -0.163 2.237 sum -26.529 12.755 10.061 31.108 Atomic orbital electron populations 1.21776 0.92218 1.02752 1.03334 1.21205 0.96930 0.96872 0.96032 1.21825 1.01241 0.94767 1.02524 1.23297 0.73875 1.01273 1.00293 1.86225 1.25384 1.72637 1.43643 1.18180 0.83412 0.77390 0.80842 1.90951 1.65049 1.55381 1.38721 1.47155 1.01960 1.59926 1.24439 1.21818 0.94405 0.95287 0.87199 1.22529 0.94400 0.95022 0.96487 1.62041 1.14270 1.36580 1.13297 1.22033 0.93772 0.92993 0.97190 1.21398 0.95993 0.98122 0.97500 1.23081 0.99739 1.01399 0.97766 1.83779 1.44153 1.30297 1.40558 1.22366 1.21152 1.04229 1.19395 0.93292 1.25823 0.93422 0.99916 0.97750 1.70047 1.20753 1.34092 1.31218 0.85688 0.81818 0.79144 0.78529 1.18571 1.18956 1.14975 1.22675 0.96171 0.97229 0.93629 1.21945 0.93055 0.96374 0.88737 0.91916 0.90415 0.92080 0.89991 0.92887 0.91182 0.92513 0.91710 0.91436 0.88966 0.88850 0.87310 0.95156 0.89517 0.94784 0.90693 0.90161 0.91496 0.91983 0.91455 0.95109 0.87706 0.87986 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.19 71.98 0.66 -0.47 16 2 C -0.09 -1.02 3.16 -10.79 -0.03 -1.06 16 3 C -0.15 -1.55 9.09 71.98 0.65 -0.89 16 4 C 0.09 1.40 4.85 71.98 0.35 1.75 16 5 O -0.37 -7.27 8.44 -55.55 -0.47 -7.74 16 6 C 0.65 15.14 8.44 129.79 1.10 16.23 16 7 O -0.61 -17.64 15.58 19.82 0.31 -17.33 16 8 N -0.59 -11.61 3.01 -948.35 -2.85 -14.47 16 9 C 0.13 2.29 6.60 86.35 0.57 2.86 16 10 C 0.04 0.74 5.58 86.39 0.48 1.22 16 11 N -0.54 -10.16 4.78 -895.36 -4.28 -14.44 16 12 C 0.07 1.49 5.27 86.30 0.45 1.94 16 13 C -0.09 -2.41 4.47 30.59 0.14 -2.27 16 14 C -0.07 -2.56 5.67 71.98 0.41 -2.15 16 15 S -0.22 -10.07 19.41 -56.49 -1.10 -11.17 16 16 C -0.52 -30.64 10.04 67.96 0.68 -29.96 16 17 H 0.05 3.13 8.03 -2.91 -0.02 3.10 16 18 C 0.04 2.07 5.50 84.86 0.47 2.54 16 19 N -0.92 -56.67 13.97 21.65 0.30 -56.36 16 20 Si 0.93 43.57 27.74 68.60 1.90 45.48 16 21 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.23 -10.14 6.74 99.48 0.67 -9.47 16 24 C 0.03 0.57 5.04 86.37 0.44 1.00 16 25 C 0.12 1.95 6.61 86.33 0.57 2.52 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.67 7.82 -2.39 -0.02 0.65 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.71 7.06 -2.38 -0.02 1.69 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.11 1.47 8.11 -2.39 -0.02 1.45 16 38 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 39 H 0.09 1.78 8.14 -2.38 -0.02 1.77 16 40 H 0.03 0.75 8.08 -2.39 -0.02 0.73 16 41 H 0.07 1.92 6.18 -2.39 -0.01 1.90 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.07 2.45 8.14 -2.40 -0.02 2.43 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 46 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.10 1.87 5.73 -2.39 -0.01 1.86 16 48 H 0.10 1.51 6.98 -2.39 -0.02 1.50 16 49 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -70.51 399.97 1.61 -68.90 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.86 Total: 13.88 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 6.93 Total: -6.74 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -6.83 Total: -85.27 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.16 Total: -25.07 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.90 Total: 45.48 kcal Atomic # 16 Polarization: -10.07 SS G_CDS: -1.10 Total: -11.17 kcal Total: -70.51 1.61 -68.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074989813.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.809 kcal (2) G-P(sol) polarization free energy of solvation -70.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds