Wall clock time and date at job start Tue Mar 31 2020 17:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47136 * 2 1 4 4 C 1.34635 * 116.99847 * 179.97438 * 3 2 1 5 5 O 1.21513 * 120.00132 * 0.02562 * 4 3 2 6 6 N 1.34775 * 119.99936 * 179.97438 * 4 3 2 7 7 C 1.46503 * 119.99898 * 359.97438 * 6 4 3 8 8 C 1.46502 * 120.00279 * 180.02562 * 6 4 3 9 9 C 1.53110 * 109.52183 * 300.00015 * 8 6 4 10 10 C 1.53032 * 109.27921 * 177.62068 * 9 8 6 11 11 N 1.46852 * 109.52437 * 300.82148 * 10 9 8 12 12 C 1.46902 * 110.99971 * 185.83517 * 11 10 9 13 13 C 1.53001 * 109.46901 * 169.99744 * 12 11 10 14 14 C 1.53000 * 109.46886 * 180.02562 * 13 12 11 15 15 S 1.81002 * 109.47004 * 180.02562 * 14 13 12 16 16 C 1.76193 * 100.00049 * 180.02562 * 15 14 13 17 17 H 1.08005 * 120.00026 * 359.97438 * 16 15 14 18 18 C 1.38806 * 120.00056 * 180.02562 * 16 15 14 19 19 N 1.31623 * 119.99640 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00053 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47282 * 59.99711 * 20 18 16 22 22 H 1.48497 * 109.47200 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47280 * 300.00084 * 20 18 16 24 24 C 1.46848 * 111.19424 * 61.74147 * 11 10 9 25 25 C 1.53034 * 109.52086 * 298.25597 * 24 11 10 26 26 H 1.09005 * 109.47024 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47543 * 300.00289 * 1 2 3 28 28 H 1.09000 * 109.46742 * 60.00845 * 1 2 3 29 29 H 1.08997 * 109.47543 * 239.99711 * 2 1 3 30 30 H 1.09005 * 109.46916 * 119.99866 * 2 1 3 31 31 H 1.08994 * 109.47679 * 270.00198 * 7 6 4 32 32 H 1.09001 * 109.46891 * 30.00278 * 7 6 4 33 33 H 1.09006 * 109.47298 * 149.99558 * 7 6 4 34 34 H 1.08996 * 109.52212 * 179.87285 * 8 6 4 35 35 H 1.09000 * 109.50668 * 57.67933 * 9 8 6 36 36 H 1.08999 * 109.50680 * 297.56647 * 9 8 6 37 37 H 1.08999 * 109.46700 * 180.80460 * 10 9 8 38 38 H 1.09001 * 109.45697 * 60.83587 * 10 9 8 39 39 H 1.09001 * 109.46712 * 50.00147 * 12 11 10 40 40 H 1.09002 * 109.47411 * 290.00258 * 12 11 10 41 41 H 1.09001 * 109.46652 * 60.00371 * 13 12 11 42 42 H 1.08992 * 109.47514 * 300.00460 * 13 12 11 43 43 H 1.09002 * 109.47398 * 300.00496 * 14 13 12 44 44 H 1.09001 * 109.47194 * 60.00677 * 14 13 12 45 45 H 0.97010 * 119.99946 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.46425 * 58.27501 * 24 11 10 47 47 H 1.09002 * 109.45789 * 178.23868 * 24 11 10 48 48 H 1.08996 * 109.50601 * 299.24170 * 25 24 11 49 49 H 1.09006 * 109.50179 * 179.12409 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0005 6 7 3.8639 2.7908 0.0000 7 6 2.9715 3.9526 -0.0016 8 6 5.3163 2.9827 0.0001 9 6 5.9180 2.3350 1.2501 10 6 7.4404 2.4869 1.2149 11 7 7.9699 1.8440 0.0055 12 6 9.4389 1.8490 0.0068 13 6 9.9529 0.9616 -1.1286 14 6 11.4829 0.9663 -1.1269 15 16 12.0910 -0.0829 -2.4705 16 6 13.8281 0.1004 -2.2397 17 1 14.2041 0.7247 -1.4425 18 6 14.7135 -0.5566 -3.0830 19 7 14.2553 -1.3170 -4.0548 20 14 16.5551 -0.3617 -2.8387 21 1 16.9282 -0.8406 -1.4835 22 1 17.2774 -1.1591 -3.8623 23 1 16.9240 1.0702 -2.9765 24 6 7.4426 2.4803 -1.2083 25 6 5.9202 2.3281 -1.2454 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.7510 4.2400 -1.0296 32 1 2.0439 3.6990 0.5116 33 1 3.4555 4.7833 0.5121 34 1 5.5428 4.0489 -0.0027 35 1 5.6583 1.2766 1.2725 36 1 5.5238 2.8257 2.1400 37 1 7.8731 2.0142 2.0966 38 1 7.6995 3.5456 1.2066 39 1 9.8027 1.4661 0.9603 40 1 9.7989 2.8678 -0.1368 41 1 9.5891 1.3445 -2.0821 42 1 9.5929 -0.0571 -0.9851 43 1 11.8433 1.9850 -1.2702 44 1 11.8464 0.5831 -0.1733 45 1 14.8740 -1.7765 -4.6440 46 1 7.7018 3.5391 -1.2053 47 1 7.8769 2.0028 -2.0867 48 1 5.6606 1.2697 -1.2624 49 1 5.5276 2.8141 -2.1386 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074990056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:45 Heat of formation + Delta-G solvation = -87.750592 kcal Electronic energy + Delta-G solvation = -26171.806176 eV Core-core repulsion = 22452.873205 eV Total energy + Delta-G solvation = -3718.932971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.00972 -39.17334 -37.22365 -35.84017 -33.98922 -32.39051 -32.02280 -31.11598 -30.81103 -27.17581 -26.07937 -25.42973 -23.94636 -23.40373 -22.86925 -21.11621 -20.51200 -20.11219 -17.94140 -17.42897 -17.09861 -16.96556 -15.92680 -15.39660 -15.35019 -14.96397 -14.76606 -14.65722 -14.18877 -14.01423 -13.91131 -13.81509 -13.31907 -13.20017 -13.10654 -12.86034 -12.75600 -12.39681 -12.28266 -12.23509 -11.92831 -11.64539 -11.51200 -11.36429 -11.21061 -11.02298 -10.87744 -10.85850 -10.69593 -10.63580 -10.56614 -10.26176 -10.10345 -9.47417 -9.01525 -9.00575 -8.24795 -8.21526 -6.47013 -6.18069 -3.87805 1.84898 2.61135 3.24685 3.26086 3.30614 3.51214 3.59047 3.97317 4.27353 4.52498 4.60025 4.63117 4.64177 4.70706 4.89107 4.95345 5.04303 5.11016 5.17517 5.19174 5.21670 5.25293 5.33744 5.35775 5.39585 5.41349 5.46931 5.52746 5.56846 5.61163 5.70675 5.77908 5.84499 5.89781 6.00360 6.07070 6.08081 6.18755 6.21362 6.42984 6.43815 6.68006 6.83545 7.06440 7.17853 7.20475 7.64463 8.08301 8.40831 9.27823 10.90030 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.024956 B = 0.001883 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.702072 B =14864.124716 C =15488.311839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 O -0.374 6.374 4 C 0.646 3.354 5 O -0.554 6.554 6 N -0.598 5.598 7 C 0.084 3.916 8 C 0.168 3.832 9 C -0.135 4.135 10 C 0.063 3.937 11 N -0.535 5.535 12 C 0.062 3.938 13 C -0.094 4.094 14 C -0.112 4.112 15 S -0.132 6.132 16 C -0.517 4.517 17 H 0.071 0.929 18 C 0.071 3.929 19 N -0.870 5.870 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.275 1.275 24 C 0.058 3.942 25 C -0.136 4.136 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.029 0.971 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.267 0.733 46 H 0.030 0.970 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.017 11.095 10.485 31.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 O -0.289 6.289 4 C 0.400 3.600 5 O -0.442 6.442 6 N -0.338 5.338 7 C -0.059 4.059 8 C 0.066 3.934 9 C -0.174 4.174 10 C -0.066 4.066 11 N -0.260 5.260 12 C -0.067 4.067 13 C -0.133 4.133 14 C -0.262 4.262 15 S 0.096 5.904 16 C -0.665 4.665 17 H 0.089 0.911 18 C -0.138 4.138 19 N -0.505 5.505 20 Si 0.744 3.256 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.070 4.070 25 C -0.174 4.174 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.048 0.952 47 H 0.105 0.895 48 H 0.117 0.883 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -28.533 9.533 9.554 31.564 hybrid contribution 2.133 1.700 1.023 2.914 sum -26.399 11.233 10.578 30.578 Atomic orbital electron populations 1.21822 0.92661 1.03092 1.03350 1.22941 0.94668 0.78782 1.02956 1.86222 1.22462 1.33172 1.87041 1.18086 0.81062 0.84162 0.76663 1.91014 1.59185 1.39342 1.54631 1.46815 1.06952 1.03356 1.76669 1.21784 0.94256 0.87735 1.02110 1.21181 0.75805 0.99773 0.96628 1.22073 0.94756 1.04363 0.96190 1.21979 0.94363 0.96565 0.93689 1.61885 1.07813 1.54716 1.01563 1.22163 0.85792 0.98490 1.00279 1.21288 0.93759 1.00683 0.97540 1.23236 0.97037 1.02751 1.03128 1.84644 1.06195 1.61261 1.38268 1.22661 0.90122 1.34485 1.19224 0.91068 1.25012 0.99591 0.94625 0.94588 1.70018 1.35256 1.28581 1.16681 0.86231 0.82913 0.78334 0.78083 1.19954 1.20835 1.19998 1.22077 0.94173 0.96650 0.94121 1.22085 0.94853 1.04370 0.96136 0.89986 0.91615 0.91541 0.91057 0.91158 0.92518 0.90518 0.90946 0.89274 0.88413 0.91856 0.90405 0.95255 0.90835 0.95067 0.91705 0.90698 0.92433 0.92162 0.92296 0.95180 0.89454 0.88344 0.91710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.29 37.16 0.38 -0.37 16 2 C 0.08 0.64 6.19 37.16 0.23 0.87 16 3 O -0.37 -3.68 9.04 -40.31 -0.36 -4.05 16 4 C 0.65 7.49 7.81 54.05 0.42 7.91 16 5 O -0.55 -8.10 12.30 -19.28 -0.24 -8.34 16 6 N -0.60 -5.57 2.83 -179.60 -0.51 -6.08 16 7 C 0.08 0.49 10.41 59.85 0.62 1.11 16 8 C 0.17 1.61 2.61 -67.81 -0.18 1.43 16 9 C -0.14 -1.42 5.33 -26.66 -0.14 -1.56 16 10 C 0.06 0.68 5.46 -3.83 -0.02 0.66 16 11 N -0.54 -7.08 4.66 -234.66 -1.09 -8.17 16 12 C 0.06 0.88 4.96 -3.82 -0.02 0.86 16 13 C -0.09 -1.63 5.15 -26.73 -0.14 -1.76 16 14 C -0.11 -2.34 5.67 37.16 0.21 -2.13 16 15 S -0.13 -3.55 21.44 -107.50 -2.30 -5.86 16 16 C -0.52 -15.14 9.50 30.94 0.29 -14.84 16 17 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 18 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 19 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 20 Si 0.92 21.88 29.55 -169.99 -5.02 16.86 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 24 C 0.06 0.71 5.29 -3.83 -0.02 0.69 16 25 C -0.14 -1.55 5.33 -26.65 -0.14 -1.69 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.42 7.37 -51.93 -0.38 0.04 16 33 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 34 H 0.09 0.69 7.80 -51.93 -0.40 0.28 16 35 H 0.10 1.32 6.12 -51.93 -0.32 1.00 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.83 8.02 -51.93 -0.42 0.41 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.07 1.01 7.99 -51.93 -0.41 0.60 16 40 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 41 H 0.06 1.12 6.43 -51.93 -0.33 0.79 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.06 1.18 8.14 -51.91 -0.42 0.76 16 44 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 47 H 0.09 1.16 6.21 -51.93 -0.32 0.84 16 48 H 0.10 1.42 6.10 -51.93 -0.32 1.10 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 397.90 15.07 6.00 6.00 Total: -1.00 -33.89 397.90 -10.18 -44.07 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.78 Total: -1.84 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: 1.41 Total: -6.86 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: -0.87 Total: -39.98 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.60 Total: -12.39 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -2.30 Total: -5.86 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.89 -10.18 -44.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074990056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.682 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds