Wall clock time and date at job start Tue Mar 31 2020 16:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.56648 * 2 1 4 4 C 1.53204 * 109.77502 * 239.99302 * 2 1 3 5 5 C 1.53111 * 109.44106 * 301.11023 * 4 2 1 6 6 N 1.47109 * 109.11862 * 306.00743 * 5 4 2 7 7 S 1.65596 * 120.91372 * 233.39712 * 6 5 4 8 8 O 1.42099 * 106.39809 * 17.56123 * 7 6 5 9 9 O 1.42103 * 106.40326 * 150.47530 * 7 6 5 10 10 N 1.65590 * 107.21806 * 264.02101 * 7 6 5 11 11 C 1.46502 * 120.00111 * 89.99928 * 10 7 6 12 12 C 1.46503 * 119.99796 * 269.99748 * 10 7 6 13 13 C 1.50694 * 109.47365 * 95.00585 * 12 10 7 14 14 H 1.08005 * 120.00109 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00517 * 180.02562 * 13 12 10 16 16 N 1.31514 * 120.00612 * 179.97438 * 15 13 12 17 17 Si 1.86803 * 119.99600 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.46970 * 90.00437 * 17 15 13 19 19 H 1.48503 * 109.46999 * 210.00345 * 17 15 13 20 20 H 1.48500 * 109.47144 * 330.00515 * 17 15 13 21 21 C 1.46682 * 118.17581 * 53.37568 * 6 5 4 22 22 H 1.09006 * 109.60705 * 64.98577 * 21 6 5 23 23 C 1.52799 * 110.57295 * 185.80232 * 21 6 5 24 24 C 1.53154 * 109.01466 * 180.27448 * 23 21 6 25 25 C 1.52913 * 109.85422 * 300.41786 * 24 23 21 26 26 C 1.53144 * 109.86559 * 59.06200 * 25 24 23 27 27 C 1.52775 * 109.51898 * 120.14928 * 2 1 3 28 28 H 1.09006 * 109.38331 * 177.29531 * 27 2 1 29 29 H 1.09000 * 109.47436 * 299.84654 * 1 2 3 30 30 H 1.08997 * 109.47694 * 59.84863 * 1 2 3 31 31 H 1.09001 * 109.47318 * 179.84902 * 1 2 3 32 32 H 1.08991 * 109.68647 * 181.03700 * 4 2 1 33 33 H 1.09004 * 109.39127 * 60.99440 * 4 2 1 34 34 H 1.09001 * 109.52849 * 186.12036 * 5 4 2 35 35 H 1.08999 * 109.53428 * 65.90272 * 5 4 2 36 36 H 1.08999 * 109.46860 * 90.00050 * 11 10 7 37 37 H 1.09006 * 109.46737 * 209.99506 * 11 10 7 38 38 H 1.08998 * 109.47161 * 329.99769 * 11 10 7 39 39 H 1.09008 * 109.47148 * 215.00190 * 12 10 7 40 40 H 1.08994 * 109.47300 * 334.99529 * 12 10 7 41 41 H 0.96997 * 120.00165 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.55012 * 60.41470 * 23 21 6 43 43 H 1.09001 * 109.54653 * 300.12922 * 23 21 6 44 44 H 1.08999 * 109.40866 * 60.53926 * 24 23 21 45 45 H 1.09004 * 109.40455 * 180.38227 * 24 23 21 46 46 H 1.09006 * 109.40286 * 179.17879 * 25 24 23 47 47 H 1.08994 * 109.40771 * 299.02125 * 25 24 23 48 48 H 1.09000 * 109.55023 * 60.31283 * 26 25 24 49 49 H 1.09010 * 109.54691 * 180.58216 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8950 1.0271 0.0000 4 6 2.0483 -0.7210 -1.2485 5 6 1.5187 -2.1575 -1.2641 6 7 1.8650 -2.8126 0.0068 7 16 2.6699 -4.2596 0.0264 8 8 3.2460 -4.4157 -1.2632 9 8 3.4322 -4.2786 1.2255 10 7 1.5309 -5.4521 0.1772 11 6 0.9326 -6.0492 -1.0193 12 6 1.1216 -5.9099 1.5073 13 6 -0.1191 -5.1687 1.9340 14 1 -0.5587 -4.4301 1.2800 15 6 -0.6928 -5.4327 3.1596 16 7 -1.7753 -4.7855 3.5322 17 14 0.0678 -6.7097 4.2911 18 1 1.0642 -6.0556 5.1767 19 1 -0.9957 -7.3340 5.1186 20 1 0.7393 -7.7548 3.4774 21 6 1.4782 -2.1485 1.2562 22 1 0.3912 -2.1105 1.3289 23 6 2.0441 -2.8992 2.4607 24 6 1.6141 -2.1811 3.7433 25 6 2.1371 -0.7443 3.7343 26 6 1.5905 0.0009 2.5132 27 6 2.0404 -0.7232 1.2452 28 1 3.1294 -0.7641 1.2189 29 1 -0.3634 0.5114 0.8913 30 1 -0.3634 0.5161 -0.8886 31 1 -0.3634 -1.0277 -0.0027 32 1 3.1381 -0.7363 -1.2378 33 1 1.7016 -0.1970 -2.1392 34 1 1.9721 -2.7040 -2.0911 35 1 0.4355 -2.1453 -1.3844 36 1 1.5263 -6.9081 -1.3323 37 1 -0.0838 -6.3726 -0.7945 38 1 0.9102 -5.3113 -1.8212 39 1 0.9129 -6.9794 1.4751 40 1 1.9231 -5.7176 2.2204 41 1 -2.1790 -4.9715 4.3943 42 1 3.1323 -2.9178 2.4006 43 1 1.6603 -3.9194 2.4679 44 1 0.5259 -2.1701 3.8047 45 1 2.0203 -2.7078 4.6069 46 1 1.8147 -0.2358 4.6431 47 1 3.2262 -0.7556 3.6926 48 1 0.5015 0.0204 2.5551 49 1 1.9747 1.0211 2.5063 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075730868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:49 Heat of formation + Delta-G solvation = -76.816595 kcal Electronic energy + Delta-G solvation = -30536.052553 eV Core-core repulsion = 26817.593715 eV Total energy + Delta-G solvation = -3718.458838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.89395 -37.02243 -35.72075 -35.38688 -35.23995 -33.64577 -32.46520 -30.00801 -29.27700 -28.35992 -27.12036 -25.17146 -23.83915 -22.43652 -22.29698 -21.84813 -19.50891 -18.95206 -18.04758 -17.14022 -16.83388 -16.32957 -15.86168 -14.99983 -14.93613 -14.72504 -14.29167 -14.20085 -13.88368 -13.65812 -13.16264 -13.07520 -12.79787 -12.76398 -12.51652 -12.41587 -12.13458 -11.90360 -11.76649 -11.63968 -11.56967 -11.37653 -11.24196 -11.18677 -10.89837 -10.86402 -10.73976 -10.66142 -10.61360 -10.38755 -10.25431 -10.12838 -9.61033 -9.60541 -9.43733 -9.20963 -8.66738 -8.39406 -8.06840 -6.18070 -4.16954 1.25343 3.23639 3.30505 3.34822 3.46232 4.08974 4.32717 4.79252 4.83059 4.97785 5.03405 5.14096 5.25275 5.27969 5.42937 5.47807 5.52700 5.58245 5.67728 5.73412 5.80211 5.90533 5.97113 5.99087 6.00104 6.01656 6.12738 6.13287 6.20334 6.21081 6.25866 6.32628 6.40294 6.42131 6.47615 6.53620 6.60953 6.74019 6.75988 6.83644 6.86302 7.06556 7.11945 7.24915 7.37561 7.45187 7.54314 8.38916 8.86376 9.42482 10.93629 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011657 B = 0.007410 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.421639 B = 3777.897966 C = 4967.969120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.083 4.083 3 H 0.065 0.935 4 C -0.124 4.124 5 C 0.119 3.881 6 N -0.997 5.997 7 S 2.784 3.216 8 O -1.002 7.002 9 O -0.974 6.974 10 N -0.993 5.993 11 C 0.107 3.893 12 C 0.210 3.790 13 C -0.536 4.536 14 H 0.083 0.917 15 C 0.082 3.918 16 N -0.888 5.888 17 Si 0.859 3.141 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.173 3.827 22 H 0.082 0.918 23 C -0.165 4.165 24 C -0.110 4.110 25 C -0.120 4.120 26 C -0.109 4.109 27 C -0.092 4.092 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.034 0.966 40 H 0.044 0.956 41 H 0.265 0.735 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.067 0.933 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.832 8.086 -6.046 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.163 4.163 5 C -0.007 4.007 6 N -0.835 5.835 7 S 2.795 3.205 8 O -0.986 6.986 9 O -0.959 6.959 10 N -0.834 5.834 11 C -0.040 4.040 12 C 0.087 3.913 13 C -0.574 4.574 14 H 0.101 0.899 15 C -0.121 4.121 16 N -0.525 5.525 17 Si 0.686 3.314 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.189 1.189 21 C 0.067 3.933 22 H 0.100 0.900 23 C -0.203 4.203 24 C -0.148 4.148 25 C -0.157 4.157 26 C -0.147 4.147 27 C -0.112 4.112 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.113 0.887 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.633 7.912 -5.987 11.409 hybrid contribution -0.330 -0.563 0.731 0.980 sum 5.303 7.349 -5.256 10.476 Atomic orbital electron populations 1.21979 0.95099 1.02842 1.01147 1.21034 0.96085 0.98490 0.94516 0.91707 1.21889 1.00828 0.95670 0.97944 1.21367 1.00441 0.93565 0.85335 1.58071 1.75980 1.38072 1.11396 1.01842 0.73915 0.72329 0.72416 1.93501 1.76326 1.86236 1.42577 1.93616 1.69494 1.86211 1.46530 1.57480 1.59968 1.52950 1.12986 1.21220 0.99520 0.97498 0.85734 1.19679 0.96652 0.96461 0.78551 1.21360 1.09585 1.23373 1.03130 0.89949 1.24775 0.94507 0.95449 0.97412 1.69874 1.19972 1.41239 1.21429 0.87105 0.79581 0.82911 0.81832 1.19546 1.21077 1.18898 1.20900 0.99862 0.90658 0.81865 0.90019 1.22844 1.02900 1.02214 0.92380 1.21405 1.01664 0.93945 0.97777 1.21590 1.00202 0.96741 0.97199 1.21543 1.01232 0.97927 0.94015 1.21495 1.00268 0.95525 0.93924 0.91354 0.92491 0.93313 0.91417 0.91811 0.91243 0.89651 0.91505 0.93799 0.90613 0.92744 0.94782 0.93842 0.92545 0.88651 0.87073 0.91242 0.92436 0.92679 0.92569 0.91457 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.15 37.16 0.30 -1.60 16 2 C -0.08 -1.03 2.73 -90.63 -0.25 -1.27 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.12 -1.52 5.63 -26.57 -0.15 -1.67 16 5 C 0.12 1.70 6.02 -3.65 -0.02 1.68 16 6 N -1.00 -17.18 3.35 -106.64 -0.36 -17.54 16 7 S 2.78 54.65 5.73 -107.50 -0.62 54.03 16 8 O -1.00 -20.38 15.69 -57.17 -0.90 -21.28 16 9 O -0.97 -21.02 11.98 -57.17 -0.68 -21.71 16 10 N -0.99 -19.84 3.23 -123.05 -0.40 -20.24 16 11 C 0.11 1.80 10.31 59.85 0.62 2.42 16 12 C 0.21 4.74 3.77 -5.19 -0.02 4.72 16 13 C -0.54 -13.32 8.06 -34.44 -0.28 -13.60 16 14 H 0.08 2.21 8.06 -52.48 -0.42 1.78 16 15 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -24.49 13.96 55.43 0.77 -23.71 16 17 Si 0.86 20.04 27.47 -169.99 -4.67 15.37 16 18 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 21 C 0.17 3.02 2.25 -67.82 -0.15 2.87 16 22 H 0.08 1.56 6.51 -51.93 -0.34 1.23 16 23 C -0.17 -3.25 3.57 -26.75 -0.10 -3.34 16 24 C -0.11 -1.98 5.91 -26.70 -0.16 -2.14 16 25 C -0.12 -1.75 5.91 -26.70 -0.16 -1.91 16 26 C -0.11 -1.48 4.97 -26.76 -0.13 -1.61 16 27 C -0.09 -1.33 1.79 -90.72 -0.16 -1.50 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 0.69 6.60 -51.93 -0.34 0.35 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.97 4.94 -51.93 -0.26 0.71 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.21 6.82 -51.93 -0.35 0.85 16 35 H 0.07 0.91 6.77 -51.93 -0.35 0.55 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 38 H 0.05 0.82 7.79 -51.93 -0.40 0.41 16 39 H 0.03 0.76 7.17 -51.92 -0.37 0.39 16 40 H 0.04 1.02 5.34 -51.93 -0.28 0.74 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.10 1.93 5.93 -51.93 -0.31 1.62 16 43 H 0.11 2.49 2.55 -51.93 -0.13 2.35 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.94 6.65 -51.93 -0.35 0.59 16 49 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 LS Contribution 357.76 15.07 5.39 5.39 Total: -1.00 -28.51 357.76 -10.35 -38.86 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -8.14 Total: 5.74 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.75 Total: -14.91 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: 0.02 Total: -61.49 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.58 Total: -42.99 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Atomic # 16 Polarization: 54.65 SS G_CDS: -0.62 Total: 54.03 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.51 -10.35 -38.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075730868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.959 kcal (2) G-P(sol) polarization free energy of solvation -28.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds