Wall clock time and date at job start Tue Mar 31 2020 18:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99936 * 2 1 4 4 C 1.52994 * 109.47333 * 59.99741 * 3 2 1 5 5 C 1.53001 * 109.47365 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.46960 * 59.99967 * 5 4 3 7 7 C 1.53001 * 109.47385 * 300.00592 * 6 5 4 8 8 C 1.52998 * 109.46863 * 299.99755 * 3 2 1 9 9 S 1.65599 * 119.99727 * 180.02562 * 2 1 3 10 10 O 1.42100 * 106.40241 * 156.45875 * 9 2 1 11 11 O 1.42096 * 106.40379 * 23.53497 * 9 2 1 12 12 N 1.65608 * 107.21718 * 269.99659 * 9 2 1 13 13 C 1.46494 * 119.99583 * 90.00246 * 12 9 2 14 14 C 1.50703 * 109.47225 * 95.00259 * 13 12 9 15 15 H 1.07996 * 120.00066 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99842 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99597 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00371 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.47175 * 89.99893 * 18 16 14 20 20 H 1.48496 * 109.47237 * 209.99970 * 18 16 14 21 21 H 1.48502 * 109.46952 * 330.00114 * 18 16 14 22 22 C 1.46493 * 119.99916 * 269.72928 * 12 9 2 23 23 C 1.52997 * 109.47398 * 95.00006 * 22 12 9 24 24 C 1.53005 * 117.49989 * 243.61967 * 23 22 12 25 25 C 1.52997 * 60.00061 * 252.50806 * 24 23 22 26 26 H 1.09004 * 109.46955 * 270.00024 * 1 2 3 27 27 H 1.09003 * 109.47115 * 30.00071 * 1 2 3 28 28 H 1.08994 * 109.47486 * 150.00176 * 1 2 3 29 29 H 1.09006 * 109.46765 * 180.02562 * 3 2 1 30 30 H 1.08992 * 109.47375 * 299.99906 * 4 3 2 31 31 H 1.09004 * 109.46820 * 60.00581 * 4 3 2 32 32 H 1.09006 * 109.46971 * 300.00559 * 5 4 3 33 33 H 1.08994 * 109.47258 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.47604 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.46740 * 60.00047 * 6 5 4 36 36 H 1.09000 * 109.46737 * 299.99457 * 7 6 5 37 37 H 1.09004 * 109.47060 * 179.97438 * 7 6 5 38 38 H 1.09000 * 109.47909 * 300.00202 * 8 3 2 39 39 H 1.08998 * 109.47268 * 60.00919 * 8 3 2 40 40 H 1.09005 * 109.47101 * 215.00381 * 13 12 9 41 41 H 1.09001 * 109.47746 * 334.99625 * 13 12 9 42 42 H 0.97008 * 119.99656 * 179.97438 * 17 16 14 43 43 H 1.09004 * 109.46868 * 214.99641 * 22 12 9 44 44 H 1.09004 * 109.47439 * 334.99764 * 22 12 9 45 45 H 1.08997 * 115.54840 * 29.32534 * 23 22 12 46 46 H 1.09002 * 117.49693 * 0.02562 * 24 23 22 47 47 H 1.09000 * 117.49634 * 145.01940 * 24 23 22 48 48 H 1.09001 * 117.50089 * 252.51283 * 25 24 23 49 49 H 1.09003 * 117.50184 * 107.48619 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 1.8279 2.0711 1.2491 5 6 2.5933 3.3958 1.2495 6 6 2.2243 4.1983 0.0002 7 6 2.5939 3.3959 -1.2490 8 6 1.8279 2.0709 -1.2493 9 16 2.2929 -1.4342 -0.0006 10 8 3.5759 -1.1566 -0.5450 11 8 1.4112 -2.4063 -0.5454 12 7 2.5381 -1.8594 1.5810 13 6 1.5478 -2.6817 2.2803 14 6 1.9536 -4.1310 2.2031 15 1 2.8586 -4.4115 1.6846 16 6 1.1697 -5.0989 2.7944 17 7 1.5237 -6.3637 2.7266 18 14 -0.3952 -4.6138 3.6918 19 1 -1.5351 -4.6245 2.7402 20 1 -0.6568 -5.5803 4.7884 21 1 -0.2376 -3.2510 4.2602 22 6 3.7481 -1.4181 2.2790 23 6 3.4506 -0.1317 3.0520 24 6 4.2034 1.1333 2.6347 25 6 4.5595 0.4284 3.9451 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8899 -0.5138 29 1 3.2692 1.0695 -0.0005 30 1 0.7563 2.2703 1.2491 31 1 2.0913 1.4995 2.1392 32 1 3.6650 3.1962 1.2497 33 1 2.3303 3.9672 2.1396 34 1 2.7699 5.1419 0.0001 35 1 1.1527 4.3978 0.0000 36 1 3.6654 3.1964 -1.2488 37 1 2.3305 3.9675 -2.1390 38 1 2.0911 1.4994 -2.1393 39 1 0.7563 2.2702 -1.2492 40 1 1.4930 -2.3749 3.3248 41 1 0.5720 -2.5522 1.8121 42 1 0.9723 -7.0446 3.1429 43 1 4.0697 -2.1936 2.9743 44 1 4.5389 -1.2308 1.5525 45 1 2.4222 -0.0159 3.3940 46 1 4.9103 1.0491 1.8093 47 1 3.6702 2.0816 2.7022 48 1 4.2605 0.9128 4.8746 49 1 5.5010 -0.1197 3.9821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078697146.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:43 Heat of formation + Delta-G solvation = -54.020950 kcal Electronic energy + Delta-G solvation = -29459.600653 eV Core-core repulsion = 25742.130309 eV Total energy + Delta-G solvation = -3717.470344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.23590 -37.67278 -36.67789 -35.25052 -34.96239 -34.91424 -32.31930 -30.95134 -29.54629 -28.38680 -26.08824 -25.55687 -22.81697 -22.57682 -22.03427 -21.84882 -20.43722 -19.50017 -18.48042 -17.48376 -17.07378 -16.66388 -16.30516 -15.46116 -15.29244 -14.58845 -14.41470 -14.13482 -14.06195 -13.97221 -13.83325 -13.62130 -13.04086 -12.55896 -12.50921 -12.43884 -12.37061 -12.25044 -11.98221 -11.74767 -11.59110 -11.39636 -11.37833 -11.28094 -11.24365 -11.22333 -11.01826 -10.75997 -10.67622 -10.53253 -10.41351 -10.27513 -10.21158 -10.08309 -9.63044 -9.53087 -8.80283 -8.58222 -8.11599 -6.07389 -4.06359 1.13931 3.26621 3.31831 3.32939 3.39705 3.87295 4.08099 4.38682 4.55749 4.65512 4.69879 4.85518 4.89367 5.02426 5.07959 5.10554 5.13984 5.24026 5.27060 5.36805 5.38389 5.40049 5.51098 5.57942 5.62844 5.64340 5.72539 5.73799 5.80025 5.90194 5.91889 5.97712 5.98731 6.03943 6.04356 6.09677 6.19681 6.21939 6.30296 6.42550 6.46723 6.52654 6.69959 6.82557 7.11466 7.43207 7.59402 8.49950 8.97551 9.51820 11.06273 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.015599 B = 0.004889 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.583422 B = 5726.035216 C = 6279.416583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.009 6.009 3 C 0.154 3.846 4 C -0.143 4.143 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.128 4.128 9 S 2.779 3.221 10 O -0.992 6.992 11 O -0.962 6.962 12 N -0.982 5.982 13 C 0.229 3.771 14 C -0.530 4.530 15 H 0.077 0.923 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.871 3.129 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.265 1.265 22 C 0.152 3.848 23 C -0.170 4.170 24 C -0.198 4.198 25 C -0.175 4.175 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.033 0.967 41 H 0.027 0.973 42 H 0.264 0.736 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.095 0.905 47 H 0.105 0.895 48 H 0.090 0.910 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 22.461 -1.710 22.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.846 5.846 3 C 0.048 3.952 4 C -0.181 4.181 5 C -0.160 4.160 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.167 4.167 9 S 2.788 3.212 10 O -0.976 6.976 11 O -0.946 6.946 12 N -0.821 5.821 13 C 0.106 3.894 14 C -0.569 4.569 15 H 0.095 0.905 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.698 3.302 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.190 1.190 22 C 0.025 3.975 23 C -0.190 4.190 24 C -0.235 4.235 25 C -0.213 4.213 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.110 0.890 44 H 0.099 0.901 45 H 0.126 0.874 46 H 0.113 0.887 47 H 0.123 0.877 48 H 0.109 0.891 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.171 21.729 -2.436 21.897 hybrid contribution -1.119 0.257 0.916 1.469 sum 0.052 21.986 -1.520 22.039 Atomic orbital electron populations 1.21474 0.79265 1.03515 1.01758 1.58166 1.15042 1.21739 1.89703 1.20804 0.96567 0.83161 0.94675 1.22250 1.00590 0.96080 0.99216 1.21645 1.00807 0.95862 0.97702 1.21549 1.01202 0.98146 0.94776 1.21519 1.00555 0.95676 0.97805 1.21898 1.00702 0.95979 0.98128 1.02085 0.73054 0.72438 0.73605 1.93510 1.40914 1.85580 1.77571 1.93616 1.66619 1.57446 1.76882 1.57504 1.29553 1.63565 1.31466 1.19401 0.86282 0.90973 0.92790 1.21372 1.10830 0.89077 1.35635 0.90480 1.24857 0.97462 0.94774 0.95802 1.69899 1.38787 1.00046 1.44632 0.86934 0.84479 0.78812 0.79977 1.19832 1.21012 1.18969 1.20791 0.86495 0.93899 0.96319 1.23025 0.97669 0.95050 1.03211 1.23598 1.04045 0.97101 0.98752 1.22904 0.99896 1.04080 0.94442 0.93052 0.91227 0.90063 0.88508 0.91849 0.89634 0.91166 0.91953 0.92192 0.92148 0.91667 0.91940 0.91623 0.91514 0.94907 0.95497 0.92557 0.89009 0.90103 0.87378 0.88695 0.87658 0.89133 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 9.72 59.85 0.58 1.69 16 2 N -1.01 -14.92 3.13 -114.61 -0.36 -15.28 16 3 C 0.15 1.88 2.37 -67.94 -0.16 1.72 16 4 C -0.14 -1.44 4.26 -26.73 -0.11 -1.55 16 5 C -0.12 -1.00 4.61 -26.73 -0.12 -1.12 16 6 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 7 C -0.12 -1.01 5.92 -26.71 -0.16 -1.17 16 8 C -0.13 -1.35 5.19 -26.71 -0.14 -1.49 16 9 S 2.78 55.01 6.06 -107.50 -0.65 54.36 16 10 O -0.99 -20.53 15.25 -57.17 -0.87 -21.40 16 11 O -0.96 -22.94 15.71 -57.17 -0.90 -23.84 16 12 N -0.98 -19.62 2.83 -115.67 -0.33 -19.94 16 13 C 0.23 5.30 4.17 -5.20 -0.02 5.28 16 14 C -0.53 -15.02 9.94 -34.44 -0.34 -15.36 16 15 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 18 Si 0.87 20.98 27.47 -169.99 -4.67 16.31 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 22 C 0.15 2.58 5.96 -4.05 -0.02 2.55 16 23 C -0.17 -2.27 4.98 -90.62 -0.45 -2.72 16 24 C -0.20 -2.16 7.25 -26.73 -0.19 -2.35 16 25 C -0.18 -1.95 10.25 -26.73 -0.27 -2.23 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 28 H 0.08 1.17 7.02 -51.93 -0.36 0.81 16 29 H 0.10 1.29 6.49 -51.93 -0.34 0.96 16 30 H 0.06 0.62 7.67 -51.93 -0.40 0.22 16 31 H 0.09 0.92 3.79 -51.93 -0.20 0.73 16 32 H 0.07 0.57 6.66 -51.93 -0.35 0.23 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.64 6.66 -51.93 -0.35 0.30 16 40 H 0.03 0.73 7.17 -51.93 -0.37 0.35 16 41 H 0.03 0.63 7.04 -51.93 -0.37 0.26 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.09 1.64 8.11 -51.93 -0.42 1.22 16 44 H 0.08 1.34 6.65 -51.93 -0.35 1.00 16 45 H 0.11 1.49 7.48 -51.93 -0.39 1.10 16 46 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 47 H 0.11 0.98 4.25 -51.93 -0.22 0.76 16 48 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -33.40 374.25 -11.29 -44.69 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.25 Total: 2.00 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.68 Total: -15.78 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.09 Total: -61.97 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -1.77 Total: -45.24 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 16 Polarization: 55.01 SS G_CDS: -0.65 Total: 54.36 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.40 -11.29 -44.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078697146.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.331 kcal (2) G-P(sol) polarization free energy of solvation -33.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds