Wall clock time and date at job start Tue Mar 31 2020 16:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52800 * 2 1 4 4 C 1.53046 * 109.49566 * 239.91868 * 2 1 3 5 5 C 1.53039 * 109.52798 * 178.67884 * 4 2 1 6 6 H 1.09006 * 109.49908 * 301.38992 * 5 4 2 7 7 C 1.52994 * 109.50057 * 181.32584 * 5 4 2 8 8 C 1.53195 * 109.31257 * 61.36716 * 5 4 2 9 9 N 1.46919 * 108.77845 * 305.36660 * 8 5 4 10 10 S 1.65596 * 120.63444 * 233.62795 * 9 8 5 11 11 O 1.42097 * 106.40851 * 203.54327 * 10 9 8 12 12 O 1.42106 * 106.39900 * 336.46219 * 10 9 8 13 13 N 1.65594 * 107.21870 * 89.99852 * 10 9 8 14 14 C 1.46501 * 120.00258 * 270.00344 * 13 10 9 15 15 C 1.50706 * 109.46927 * 94.99956 * 14 13 10 16 16 H 1.07997 * 119.99872 * 0.02562 * 15 14 13 17 17 C 1.37870 * 119.99546 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00393 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99781 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46995 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47268 * 120.00004 * 19 17 15 22 22 H 1.48508 * 109.47000 * 240.00042 * 19 17 15 23 23 C 1.46504 * 120.00073 * 90.00225 * 13 10 9 24 24 C 1.52996 * 109.47306 * 94.99714 * 23 13 10 25 25 C 1.52995 * 117.50455 * 243.75152 * 24 23 13 26 26 C 1.52999 * 117.50293 * 175.09049 * 24 23 13 27 27 C 1.46931 * 118.73612 * 53.60997 * 9 8 5 28 28 H 1.08997 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46593 * 300.08241 * 1 2 3 30 30 H 1.08996 * 109.46765 * 60.07969 * 1 2 3 31 31 H 1.09002 * 109.46115 * 58.66337 * 4 2 1 32 32 H 1.09004 * 109.45806 * 298.69221 * 4 2 1 33 33 H 1.08993 * 109.47122 * 59.99457 * 7 5 4 34 34 H 1.09003 * 109.47260 * 180.02562 * 7 5 4 35 35 H 1.09011 * 109.46826 * 299.99544 * 7 5 4 36 36 H 1.08997 * 109.58182 * 65.15696 * 8 5 4 37 37 H 1.09000 * 109.58502 * 185.57641 * 8 5 4 38 38 H 1.09002 * 109.46931 * 214.99877 * 14 13 10 39 39 H 1.08994 * 109.46857 * 334.99911 * 14 13 10 40 40 H 0.97005 * 120.00227 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47672 * 215.00617 * 23 13 10 42 42 H 1.09007 * 109.46839 * 335.00088 * 23 13 10 43 43 H 1.09002 * 115.54962 * 29.42074 * 24 23 13 44 44 H 1.09002 * 117.49587 * 0.02562 * 25 24 23 45 45 H 1.09001 * 117.50269 * 145.01922 * 25 24 23 46 46 H 1.09005 * 117.50239 * 214.98661 * 26 24 23 47 47 H 1.09000 * 117.49790 * 359.97438 * 26 24 23 48 48 H 1.08998 * 109.58959 * 66.17523 * 27 9 8 49 49 H 1.09003 * 109.58181 * 186.46006 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5708 -0.6948 -1.2659 6 1 3.9158 0.3391 -1.2544 7 6 4.0800 -1.3889 -2.5307 8 6 4.1053 -1.4265 -0.0306 9 7 3.5044 -0.8291 1.1696 10 16 4.4583 -0.2841 2.4087 11 8 3.6469 -0.2964 3.5752 12 8 5.6874 -0.9904 2.3094 13 7 4.8057 1.3048 2.0975 14 6 5.9951 1.6554 1.3174 15 6 5.6132 1.8289 -0.1301 16 1 4.5872 1.6922 -0.4380 17 6 6.5737 2.1633 -1.0610 18 7 7.8229 2.3313 -0.6858 19 14 6.1003 2.3791 -2.8552 20 1 4.6439 2.1370 -3.0154 21 1 6.4234 3.7619 -3.2895 22 1 6.8573 1.4093 -3.6870 23 6 3.9236 2.3600 2.6023 24 6 4.4638 2.8821 3.9351 25 6 3.5968 2.6751 5.1787 26 6 3.7437 4.0726 4.5717 27 6 2.0410 -0.7241 1.2495 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5151 0.8893 30 1 -0.3633 0.5126 -0.8907 31 1 1.6581 -0.2245 -2.1390 32 1 1.6968 -1.7574 -1.2352 33 1 3.6971 -0.8698 -3.4092 34 1 5.1698 -1.3689 -2.5425 35 1 3.7358 -2.4232 -2.5412 36 1 3.8377 -2.4816 -0.0868 37 1 5.1895 -1.3242 0.0139 38 1 6.4165 2.5866 1.6962 39 1 6.7347 0.8597 1.4052 40 1 8.4987 2.5662 -1.3409 41 1 3.8841 3.1765 1.8813 42 1 2.9217 1.9565 2.7494 43 1 5.5450 2.8226 4.0599 44 1 2.6417 2.1666 5.0473 45 1 4.1077 2.4798 6.1216 46 1 4.3512 4.7962 5.1154 47 1 2.8854 4.4842 4.0407 48 1 1.6051 -1.7219 1.2978 49 1 1.7633 -0.1605 2.1402 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078697176.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:25 Heat of formation + Delta-G solvation = -69.355071 kcal Electronic energy + Delta-G solvation = -29559.538012 eV Core-core repulsion = 25841.402730 eV Total energy + Delta-G solvation = -3718.135282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -38.68943 -37.54233 -36.62325 -35.16436 -34.76153 -33.31656 -33.04278 -32.39444 -27.82942 -26.62219 -26.45559 -25.40764 -24.06134 -22.53861 -22.00865 -20.60617 -20.23418 -19.71511 -18.29787 -17.23289 -16.83495 -16.36447 -15.91705 -15.13735 -14.82197 -14.59999 -14.55722 -14.20902 -14.07724 -13.53371 -13.38639 -13.05324 -12.66536 -12.56841 -12.39675 -12.27545 -11.95476 -11.87589 -11.76522 -11.48887 -11.47288 -11.42382 -11.28060 -11.18161 -11.17177 -11.13107 -10.87004 -10.65504 -10.60407 -10.44760 -10.28646 -10.12560 -10.03928 -9.88611 -9.53936 -9.45398 -8.58954 -8.47428 -8.00819 -6.11597 -4.17234 1.30168 3.21602 3.30667 3.31420 3.49693 4.06120 4.24675 4.34780 4.82410 4.87293 4.99882 5.08101 5.15814 5.23316 5.23446 5.29227 5.33646 5.38478 5.56453 5.63108 5.65006 5.68632 5.78295 5.82983 5.86302 5.89536 5.94612 6.02290 6.06801 6.08238 6.17685 6.19179 6.19747 6.20071 6.39129 6.40907 6.45879 6.50163 6.55124 6.69009 6.74973 6.87174 7.00825 7.38047 7.47846 7.68160 7.87191 8.16938 8.88089 9.48070 10.96561 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.009232 B = 0.007262 C = 0.005261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.058483 B = 3854.582446 C = 5320.968170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 H 0.079 0.921 4 C -0.101 4.101 5 C -0.120 4.120 6 H 0.104 0.896 7 C -0.143 4.143 8 C 0.137 3.863 9 N -1.004 6.004 10 S 2.783 3.217 11 O -0.994 6.994 12 O -0.979 6.979 13 N -0.989 5.989 14 C 0.245 3.755 15 C -0.534 4.534 16 H 0.069 0.931 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.883 3.117 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.282 1.282 23 C 0.168 3.832 24 C -0.165 4.165 25 C -0.175 4.175 26 C -0.181 4.181 27 C 0.132 3.868 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.037 0.963 39 H 0.049 0.951 40 H 0.263 0.737 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.063 0.937 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.476 -2.976 1.943 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.129 4.129 3 H 0.098 0.902 4 C -0.139 4.139 5 C -0.140 4.140 6 H 0.122 0.878 7 C -0.202 4.202 8 C 0.012 3.988 9 N -0.841 5.841 10 S 2.793 3.207 11 O -0.978 6.978 12 O -0.963 6.963 13 N -0.829 5.829 14 C 0.123 3.877 15 C -0.574 4.574 16 H 0.087 0.913 17 C -0.136 4.136 18 N -0.527 5.527 19 Si 0.711 3.289 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.208 1.208 23 C 0.041 3.959 24 C -0.185 4.185 25 C -0.212 4.212 26 C -0.219 4.219 27 C 0.005 3.995 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.102 0.898 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.114 0.886 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.081 0.919 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.964 -3.472 2.637 12.734 hybrid contribution -0.189 0.516 -1.495 1.593 sum -12.153 -2.956 1.142 12.559 Atomic orbital electron populations 1.21773 0.95118 1.01602 1.01680 1.21529 0.95046 1.00799 0.95551 0.90242 1.21552 0.95616 0.99826 0.96873 1.21738 0.94837 1.03200 0.94205 0.87759 1.21741 1.01730 0.99612 0.97068 1.21332 0.98798 0.95409 0.83264 1.58197 1.15395 1.75722 1.34790 1.01835 0.72689 0.73326 0.72851 1.93529 1.70674 1.87397 1.46229 1.93565 1.43791 1.72180 1.86800 1.57740 1.36072 1.21722 1.67318 1.19199 0.81043 0.98016 0.89481 1.21640 0.95144 1.48112 0.92474 0.91322 1.24905 0.94831 0.95222 0.98663 1.69940 1.01019 1.47348 1.34393 0.86688 0.78922 0.77840 0.85492 1.19293 1.21175 1.20812 1.20551 0.91144 0.91669 0.92568 1.22882 0.99178 1.01872 0.94582 1.22987 1.02039 0.98813 0.97336 1.22910 1.03112 0.91365 1.04473 1.21336 0.79742 1.00401 0.97977 0.92802 0.92662 0.92625 0.92338 0.92506 0.92997 0.92106 0.93233 0.92539 0.88655 0.94456 0.93312 0.92723 0.89814 0.91881 0.87509 0.88616 0.89441 0.89223 0.89006 0.91912 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.20 37.16 0.34 -1.11 16 2 C -0.11 -1.40 2.87 -90.50 -0.26 -1.66 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.10 -1.33 4.45 -26.69 -0.12 -1.45 16 5 C -0.12 -1.90 2.87 -90.50 -0.26 -2.16 16 6 H 0.10 1.97 5.30 -51.93 -0.28 1.70 16 7 C -0.14 -2.07 9.20 37.15 0.34 -1.73 16 8 C 0.14 2.31 5.66 -3.71 -0.02 2.29 16 9 N -1.00 -17.05 3.35 -113.52 -0.38 -17.43 16 10 S 2.78 55.67 6.06 -107.50 -0.65 55.02 16 11 O -0.99 -20.03 15.82 -57.17 -0.90 -20.93 16 12 O -0.98 -22.95 15.41 -57.17 -0.88 -23.83 16 13 N -0.99 -19.89 2.82 -115.66 -0.33 -20.22 16 14 C 0.24 5.86 5.44 -5.19 -0.03 5.84 16 15 C -0.53 -13.15 8.99 -34.44 -0.31 -13.46 16 16 H 0.07 1.61 5.51 -52.49 -0.29 1.32 16 17 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 19 Si 0.88 19.96 29.54 -169.99 -5.02 14.94 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.17 2.89 5.62 -4.04 -0.02 2.86 16 24 C -0.17 -2.68 6.01 -90.62 -0.54 -3.22 16 25 C -0.17 -2.51 10.18 -26.70 -0.27 -2.78 16 26 C -0.18 -2.39 10.25 -26.70 -0.27 -2.66 16 27 C 0.13 1.84 5.66 -3.71 -0.02 1.82 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.84 7.12 -51.93 -0.37 1.47 16 38 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 39 H 0.05 1.31 6.91 -51.93 -0.36 0.95 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 42 H 0.06 0.98 7.34 -51.93 -0.38 0.60 16 43 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 44 H 0.10 1.36 8.03 -51.93 -0.42 0.95 16 45 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.08 1.12 7.12 -51.93 -0.37 0.75 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -29.26 393.48 -11.82 -41.08 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.78 Total: 5.26 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.54 Total: -15.81 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: 0.03 Total: -61.65 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -1.79 Total: -44.77 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 55.67 SS G_CDS: -0.65 Total: 55.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.26 -11.82 -41.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078697176.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.275 kcal (2) G-P(sol) polarization free energy of solvation -29.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds