Wall clock time and date at job start Tue Mar 31 2020 16:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.49777 * 2 1 4 4 C 1.53038 * 109.49724 * 120.07053 * 2 1 3 5 5 C 1.53041 * 109.53470 * 58.61981 * 4 2 1 6 6 H 1.09003 * 109.49920 * 301.40962 * 5 4 2 7 7 C 1.53008 * 109.52245 * 181.33156 * 5 4 2 8 8 C 1.53190 * 109.31778 * 61.36529 * 5 4 2 9 9 N 1.46925 * 108.77292 * 305.36727 * 8 5 4 10 10 S 1.65606 * 120.62590 * 233.58259 * 9 8 5 11 11 O 1.42100 * 106.40196 * 336.45869 * 10 9 8 12 12 O 1.42094 * 106.39883 * 203.53675 * 10 9 8 13 13 N 1.65598 * 107.21773 * 89.99992 * 10 9 8 14 14 C 1.46497 * 120.00275 * 89.99755 * 13 10 9 15 15 C 1.50700 * 109.47128 * 94.99877 * 14 13 10 16 16 H 1.07999 * 119.99988 * 0.02562 * 15 14 13 17 17 C 1.37885 * 120.00047 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99854 * 359.72512 * 17 15 14 20 20 H 1.48498 * 109.46909 * 90.00086 * 19 17 15 21 21 H 1.48497 * 109.46701 * 209.99996 * 19 17 15 22 22 H 1.48500 * 109.46867 * 330.00101 * 19 17 15 23 23 C 1.46502 * 120.00018 * 270.00091 * 13 10 9 24 24 C 1.53003 * 109.46683 * 264.99984 * 23 13 10 25 25 C 1.53001 * 117.49732 * 243.74320 * 24 23 13 26 26 C 1.53001 * 117.49760 * 175.08778 * 24 23 13 27 27 C 1.46924 * 118.74489 * 53.85764 * 9 8 5 28 28 H 1.08994 * 109.47089 * 299.92994 * 1 2 3 29 29 H 1.09009 * 109.46970 * 59.92882 * 1 2 3 30 30 H 1.09001 * 109.47121 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46093 * 298.59838 * 4 2 1 32 32 H 1.08999 * 109.44912 * 178.62746 * 4 2 1 33 33 H 1.09002 * 109.47036 * 300.14888 * 7 5 4 34 34 H 1.09004 * 109.46600 * 60.14286 * 7 5 4 35 35 H 1.08999 * 109.47019 * 180.14118 * 7 5 4 36 36 H 1.08998 * 109.58767 * 185.57261 * 8 5 4 37 37 H 1.09002 * 109.70305 * 65.21816 * 8 5 4 38 38 H 1.09004 * 109.47268 * 335.00017 * 14 13 10 39 39 H 1.08997 * 109.47471 * 215.00425 * 14 13 10 40 40 H 0.97001 * 119.99646 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.46953 * 24.99504 * 23 13 10 42 42 H 1.08998 * 109.47084 * 145.00036 * 23 13 10 43 43 H 1.08993 * 115.55132 * 29.41610 * 24 23 13 44 44 H 1.09003 * 117.49687 * 0.02562 * 25 24 23 45 45 H 1.09002 * 117.49733 * 145.02242 * 25 24 23 46 46 H 1.08996 * 117.49985 * 214.97775 * 26 24 23 47 47 H 1.09004 * 117.49504 * 359.97250 * 26 24 23 48 48 H 1.09001 * 109.58797 * 65.92353 * 27 9 8 49 49 H 1.08991 * 109.58985 * 186.35651 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 1.2485 5 6 1.5036 -2.1558 1.2659 6 1 0.4138 -2.1360 1.2537 7 6 1.9873 -2.8678 2.5308 8 6 2.0152 -2.9038 0.0308 9 7 1.6528 -2.1381 -1.1696 10 16 0.8219 -2.8559 -2.4093 11 8 1.0786 -4.2500 -2.3100 12 8 1.1044 -2.0947 -3.5754 13 7 -0.7922 -2.6543 -2.0990 14 6 -1.4930 -1.4711 -2.6040 15 6 -2.1544 -1.8014 -3.9172 16 1 -2.0623 -2.7936 -4.3337 17 6 -2.8772 -0.8369 -4.5869 18 7 -3.4548 -1.1254 -5.7327 19 14 -3.0430 0.8770 -3.8627 20 1 -1.9280 1.7293 -4.3480 21 1 -4.3381 1.4691 -4.2837 22 1 -2.9945 0.7949 -2.3807 23 6 -1.5193 -3.6592 -1.3194 24 6 -2.1987 -4.6478 -2.2691 25 6 -3.7277 -4.7012 -2.2579 26 6 -2.9171 -5.8462 -1.6457 27 6 2.0469 -0.7250 -1.2520 28 1 -0.3633 0.5127 0.8906 29 1 -0.3633 0.5150 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6983 -0.1958 2.1389 32 1 3.1305 -0.7437 1.2354 33 1 3.0771 -2.8863 2.5432 34 1 1.6230 -2.3352 3.4093 35 1 1.6063 -3.8890 2.5411 36 1 1.5571 -3.8918 -0.0138 37 1 3.0991 -3.0058 0.0857 38 1 -0.7789 -0.6608 -2.7506 39 1 -2.2502 -1.1621 -1.8834 40 1 -3.9630 -0.4467 -6.2040 41 1 -0.8213 -4.1947 -0.6759 42 1 -2.2743 -3.1669 -0.7064 43 1 -1.6967 -4.8030 -3.2240 44 1 -4.2497 -4.0316 -1.5742 45 1 -4.2316 -4.8918 -3.2054 46 1 -2.8881 -6.7897 -2.1907 47 1 -2.9053 -5.9305 -0.5590 48 1 3.1333 -0.6507 -1.2981 49 1 1.6095 -0.2751 -2.1432 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078697188.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:32 Heat of formation + Delta-G solvation = -57.798573 kcal Electronic energy + Delta-G solvation = -29559.464356 eV Core-core repulsion = 25841.830201 eV Total energy + Delta-G solvation = -3717.634154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.20880 -37.47007 -36.71501 -35.20603 -34.76271 -33.46092 -32.99994 -32.29409 -28.40047 -27.03031 -26.72908 -25.51767 -24.36424 -22.00696 -21.82161 -21.60933 -20.27630 -19.26376 -18.33719 -17.26547 -17.05649 -16.54471 -16.00556 -15.39391 -14.96226 -14.75387 -14.43213 -14.17786 -14.02780 -13.90104 -13.71715 -13.36703 -12.95390 -12.71575 -12.42580 -12.36276 -12.22521 -11.90283 -11.84507 -11.82763 -11.59756 -11.50164 -11.31475 -11.23944 -11.20621 -11.04901 -10.99288 -10.81192 -10.72364 -10.52557 -10.33752 -10.20724 -10.16018 -9.79837 -9.51580 -9.27957 -8.83417 -8.54723 -8.11211 -6.03527 -4.00853 1.10398 3.26928 3.31558 3.33621 3.40783 3.99910 4.38686 4.41146 4.56699 4.64753 4.71434 4.90062 5.02359 5.09910 5.17637 5.22089 5.28107 5.33299 5.36898 5.45734 5.50086 5.53952 5.63651 5.66644 5.72409 5.74933 5.76472 5.86572 5.93012 5.94495 5.97146 6.02372 6.05048 6.14164 6.18064 6.23119 6.36589 6.39915 6.47729 6.49495 6.63236 6.69223 6.78367 6.87065 7.10802 7.43468 7.63126 8.54442 9.04034 9.56163 11.10118 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.011336 B = 0.006183 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2469.516866 B = 4527.487437 C = 5615.981664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.106 4.106 3 H 0.077 0.923 4 C -0.102 4.102 5 C -0.111 4.111 6 H 0.080 0.920 7 C -0.145 4.145 8 C 0.128 3.872 9 N -1.010 6.010 10 S 2.776 3.224 11 O -0.988 6.988 12 O -0.960 6.960 13 N -0.983 5.983 14 C 0.232 3.768 15 C -0.520 4.520 16 H 0.080 0.920 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.865 3.135 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.265 1.265 23 C 0.170 3.830 24 C -0.145 4.145 25 C -0.159 4.159 26 C -0.193 4.193 27 C 0.125 3.875 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.067 0.933 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.671 -1.161 17.437 19.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.126 4.126 3 H 0.096 0.904 4 C -0.140 4.140 5 C -0.131 4.131 6 H 0.099 0.901 7 C -0.203 4.203 8 C 0.002 3.998 9 N -0.848 5.848 10 S 2.786 3.214 11 O -0.972 6.972 12 O -0.944 6.944 13 N -0.823 5.823 14 C 0.109 3.891 15 C -0.559 4.559 16 H 0.098 0.902 17 C -0.129 4.129 18 N -0.535 5.535 19 Si 0.692 3.308 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.189 1.189 23 C 0.044 3.956 24 C -0.165 4.165 25 C -0.196 4.196 26 C -0.231 4.231 27 C -0.001 4.001 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.085 0.915 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.951 -1.506 16.520 18.850 hybrid contribution -0.447 1.224 0.439 1.375 sum 8.504 -0.282 16.959 18.974 Atomic orbital electron populations 1.22005 0.94519 1.02978 1.01812 1.21559 0.96855 0.99076 0.95101 0.90438 1.21520 1.00159 0.94949 0.97367 1.21582 1.01528 0.95489 0.94531 0.90129 1.21781 1.01208 1.00404 0.96917 1.21390 1.00399 0.94285 0.83677 1.58461 1.71827 1.19930 1.34587 1.02204 0.72844 0.73112 0.73250 1.93545 1.85184 1.31584 1.86888 1.93625 1.84001 1.72297 1.44481 1.57587 1.25641 1.31700 1.67383 1.19433 0.92407 0.81830 0.95460 1.21377 1.31027 1.00100 1.03385 0.90158 1.24837 0.95275 0.98108 0.94658 1.69891 1.34326 1.34176 1.15120 0.87036 0.77940 0.85796 0.80044 1.19963 1.21146 1.18937 1.20579 0.95590 0.87873 0.91607 1.22620 0.95141 0.97619 1.01169 1.22851 0.94225 1.00276 1.02292 1.22969 1.06779 0.93617 0.99706 1.21523 0.99847 0.80008 0.98685 0.92928 0.92253 0.91437 0.92021 0.92044 0.92661 0.92558 0.92447 0.89617 0.91576 0.95627 0.95148 0.92715 0.91481 0.90940 0.87722 0.89193 0.89022 0.89430 0.89477 0.91483 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.41 37.16 0.31 -1.65 16 2 C -0.11 -1.16 3.21 -90.27 -0.29 -1.45 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.10 -0.94 4.71 -26.69 -0.13 -1.07 16 5 C -0.11 -1.08 2.53 -90.50 -0.23 -1.31 16 6 H 0.08 0.84 6.34 -51.93 -0.33 0.51 16 7 C -0.15 -1.12 9.20 37.16 0.34 -0.78 16 8 C 0.13 1.50 5.66 -3.71 -0.02 1.48 16 9 N -1.01 -14.70 2.78 -113.27 -0.31 -15.01 16 10 S 2.78 53.90 6.01 -107.50 -0.65 53.26 16 11 O -0.99 -20.27 15.82 -57.17 -0.90 -21.17 16 12 O -0.96 -22.55 15.81 -57.17 -0.90 -23.45 16 13 N -0.98 -19.05 2.60 -115.66 -0.30 -19.35 16 14 C 0.23 5.19 3.65 -5.20 -0.02 5.17 16 15 C -0.52 -14.26 9.52 -34.44 -0.33 -14.59 16 16 H 0.08 2.43 7.39 -52.49 -0.39 2.04 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -27.22 13.96 55.43 0.77 -26.44 16 19 Si 0.86 20.73 27.47 -169.99 -4.67 16.06 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 23 C 0.17 2.84 5.65 -4.04 -0.02 2.82 16 24 C -0.15 -2.64 5.15 -90.62 -0.47 -3.11 16 25 C -0.16 -2.71 10.18 -26.70 -0.27 -2.98 16 26 C -0.19 -2.84 10.25 -26.70 -0.27 -3.11 16 27 C 0.13 1.65 5.82 -3.48 -0.02 1.63 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.85 7.44 -51.92 -0.39 0.46 16 30 H 0.07 0.89 5.59 -51.93 -0.29 0.60 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 1.03 7.13 -51.93 -0.37 0.66 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.03 0.58 6.46 -51.93 -0.34 0.25 16 39 H 0.03 0.66 7.05 -51.93 -0.37 0.29 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 0.97 7.61 -51.93 -0.40 0.57 16 42 H 0.07 1.10 7.74 -51.93 -0.40 0.70 16 43 H 0.10 2.21 7.91 -51.93 -0.41 1.80 16 44 H 0.09 1.44 8.03 -51.93 -0.42 1.03 16 45 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 46 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.09 1.39 7.12 -51.93 -0.37 1.02 16 LS Contribution 386.44 15.07 5.82 5.82 Total: -1.00 -32.92 386.44 -11.35 -44.27 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -8.70 Total: 2.99 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.51 Total: -16.97 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: 0.16 Total: -60.81 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -1.81 Total: -44.63 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 16 Polarization: 53.90 SS G_CDS: -0.65 Total: 53.26 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.92 -11.35 -44.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078697188.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.528 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds