Wall clock time and date at job start Tue Mar 31 2020 16:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.49539 * 2 1 4 4 C 1.53038 * 109.50258 * 239.89711 * 2 1 3 5 5 C 1.53077 * 109.66092 * 178.74990 * 4 2 1 6 6 H 1.08994 * 109.62254 * 181.17146 * 5 4 2 7 7 C 1.53002 * 109.38723 * 301.28103 * 5 4 2 8 8 C 1.53191 * 109.29244 * 61.15013 * 5 4 2 9 9 N 1.46916 * 108.89654 * 305.58027 * 8 5 4 10 10 S 1.65607 * 120.63193 * 233.51468 * 9 8 5 11 11 O 1.42101 * 106.40028 * 28.52348 * 10 9 8 12 12 O 1.42095 * 106.40162 * 161.44595 * 10 9 8 13 13 N 1.65602 * 107.21615 * 274.98683 * 10 9 8 14 14 C 1.46501 * 120.00332 * 83.93179 * 13 10 9 15 15 C 1.50704 * 109.47067 * 94.99487 * 14 13 10 16 16 H 1.07999 * 119.99515 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00071 * 180.02562 * 15 14 13 18 18 N 1.31520 * 119.99772 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00165 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.46804 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46832 * 120.00226 * 19 17 15 22 22 H 1.48500 * 109.47229 * 240.00109 * 19 17 15 23 23 C 1.46505 * 119.99830 * 263.92681 * 13 10 9 24 24 C 1.53007 * 109.46682 * 96.32105 * 23 13 10 25 25 C 1.52997 * 117.49781 * 244.75885 * 24 23 13 26 26 C 1.53002 * 117.49362 * 176.09982 * 24 23 13 27 27 C 1.46932 * 118.73886 * 53.53840 * 9 8 5 28 28 H 1.08993 * 109.47171 * 299.94232 * 1 2 3 29 29 H 1.09003 * 109.46746 * 59.93868 * 1 2 3 30 30 H 1.08998 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46088 * 298.70923 * 4 2 1 32 32 H 1.08998 * 109.45656 * 58.66487 * 4 2 1 33 33 H 1.09002 * 109.46902 * 186.59448 * 7 5 4 34 34 H 1.09003 * 109.47131 * 306.58705 * 7 5 4 35 35 H 1.08999 * 109.47394 * 66.59152 * 7 5 4 36 36 H 1.09006 * 109.58365 * 185.71852 * 8 5 4 37 37 H 1.09000 * 109.58229 * 65.44465 * 8 5 4 38 38 H 1.08994 * 109.46955 * 214.99750 * 14 13 10 39 39 H 1.09005 * 109.46543 * 334.99836 * 14 13 10 40 40 H 0.97008 * 119.99454 * 180.02562 * 18 17 15 41 41 H 1.08993 * 109.47263 * 216.31892 * 23 13 10 42 42 H 1.08996 * 109.47052 * 336.32334 * 23 13 10 43 43 H 1.08996 * 115.54726 * 30.43148 * 24 23 13 44 44 H 1.09006 * 117.50130 * 0.02562 * 25 24 23 45 45 H 1.08998 * 117.49830 * 145.02015 * 25 24 23 46 46 H 1.09000 * 117.49752 * 214.97816 * 26 24 23 47 47 H 1.09000 * 117.50115 * 0.02562 * 26 24 23 48 48 H 1.08994 * 109.58481 * 66.18076 * 27 9 8 49 49 H 1.09006 * 109.58387 * 186.46085 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7235 -1.2480 5 6 3.5714 -0.6985 -1.2675 6 1 3.9341 -1.1958 -2.1671 7 6 4.0558 0.7527 -1.2548 8 6 4.1053 -1.4266 -0.0300 9 7 3.5046 -0.8287 1.1700 10 16 4.4586 -0.2842 2.4093 11 8 5.6947 0.1018 1.8243 12 8 3.6530 0.5989 3.1777 13 7 4.7871 -1.5835 3.3821 14 6 5.8904 -2.4878 3.0487 15 6 7.1278 -2.0690 3.8001 16 1 7.0954 -1.2149 4.4603 17 6 8.3011 -2.7762 3.6448 18 7 8.3405 -3.8160 2.8404 19 14 9.8347 -2.2576 4.5767 20 1 9.5288 -1.0668 5.4095 21 1 10.2827 -3.3710 5.4513 22 1 10.9116 -1.9230 3.6105 23 6 3.9745 -1.8284 4.5763 24 6 2.8828 -2.8494 4.2495 25 6 1.4296 -2.3755 4.3161 26 6 1.9805 -3.3101 5.3961 27 6 2.0412 -0.7233 1.2499 28 1 -0.3633 0.5129 0.8904 29 1 -0.3633 0.5148 -0.8895 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6968 -1.7577 -1.2346 32 1 1.6583 -0.2252 -2.1387 33 1 5.1376 0.7758 -1.3865 34 1 3.5791 1.3021 -2.0667 35 1 3.7959 1.2142 -0.3021 36 1 5.1897 -1.3245 0.0145 37 1 3.8397 -2.4824 -0.0844 38 1 5.6225 -3.5065 3.3290 39 1 6.0841 -2.4448 1.9769 40 1 9.1660 -4.3138 2.7314 41 1 4.6082 -2.2167 5.3736 42 1 3.5140 -0.8951 4.9001 43 1 3.1386 -3.5826 3.4846 44 1 1.2513 -1.3362 4.5923 45 1 0.7292 -2.7972 3.5952 46 1 1.6423 -4.3462 5.3852 47 1 2.1643 -2.8855 6.3830 48 1 1.6052 -1.7211 1.2987 49 1 1.7636 -0.1593 2.1404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078697191.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:38 Heat of formation + Delta-G solvation = -66.217916 kcal Electronic energy + Delta-G solvation = -29174.728357 eV Core-core repulsion = 25456.729113 eV Total energy + Delta-G solvation = -3717.999245 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.09477 -37.63244 -36.61319 -35.13281 -34.77671 -33.36107 -32.92667 -32.34282 -27.80928 -26.93178 -26.66933 -25.39730 -24.27531 -22.54500 -22.13160 -21.56146 -20.25340 -19.21463 -18.18152 -17.40292 -16.83217 -16.28173 -15.80866 -15.25306 -15.00428 -14.68548 -14.43674 -14.28675 -14.11649 -13.99552 -13.66830 -13.40014 -12.85626 -12.54640 -12.34394 -12.21310 -12.16372 -11.83697 -11.79394 -11.61301 -11.48451 -11.45967 -11.36121 -11.23497 -11.12416 -11.08180 -10.96555 -10.73741 -10.68260 -10.57231 -10.31805 -10.21474 -10.07174 -10.03743 -9.69279 -9.59403 -8.69293 -8.42993 -8.04378 -6.05732 -4.08916 1.24325 3.31568 3.39248 3.44290 3.50249 3.96062 4.16033 4.45733 4.66213 4.75576 4.80098 4.95295 5.01926 5.12999 5.16051 5.20880 5.24715 5.29852 5.35830 5.41150 5.56099 5.62056 5.66821 5.70616 5.75401 5.78274 5.81575 5.84737 5.87954 6.01888 6.02993 6.05092 6.06222 6.08819 6.16956 6.22070 6.27713 6.29142 6.48861 6.50493 6.53943 6.65280 6.89608 7.23768 7.42647 7.63953 7.92553 8.21855 8.93685 9.56266 11.02826 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.012649 B = 0.005180 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.039182 B = 5404.492962 C = 6691.975786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.104 4.104 5 C -0.103 4.103 6 H 0.079 0.921 7 C -0.147 4.147 8 C 0.125 3.875 9 N -1.006 6.006 10 S 2.778 3.222 11 O -0.962 6.962 12 O -0.999 6.999 13 N -0.989 5.989 14 C 0.259 3.741 15 C -0.524 4.524 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 C 0.153 3.847 24 C -0.165 4.165 25 C -0.188 4.188 26 C -0.176 4.176 27 C 0.129 3.871 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.035 0.965 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.063 0.937 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.373 2.743 -5.533 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.094 0.906 4 C -0.142 4.142 5 C -0.123 4.123 6 H 0.097 0.903 7 C -0.204 4.204 8 C -0.001 4.001 9 N -0.844 5.844 10 S 2.788 3.212 11 O -0.945 6.945 12 O -0.983 6.983 13 N -0.829 5.829 14 C 0.137 3.863 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.536 5.536 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.208 1.208 23 C 0.026 3.974 24 C -0.185 4.185 25 C -0.225 4.225 26 C -0.214 4.214 27 C 0.003 3.997 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.112 0.888 48 H 0.081 0.919 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.899 3.498 -5.463 17.171 hybrid contribution 0.783 -0.374 0.364 0.941 sum -15.116 3.124 -5.099 16.256 Atomic orbital electron populations 1.21773 0.94886 1.01824 1.01763 1.21513 0.95308 1.00506 0.95468 0.90564 1.21560 0.94969 1.00438 0.97192 1.21439 0.95629 0.97063 0.98135 0.90271 1.21844 1.01465 0.95674 1.01437 1.21422 0.98698 0.96366 0.83627 1.58293 1.15854 1.77985 1.32240 1.02048 0.72789 0.73676 0.72689 1.93620 1.42429 1.80890 1.77597 1.93487 1.71097 1.63285 1.70422 1.57758 1.41850 1.47578 1.35687 1.19011 0.82204 0.88920 0.96146 1.21520 0.94704 1.13668 1.26502 0.92185 1.24908 0.98803 0.94852 0.95389 1.69931 1.27572 1.18913 1.37159 0.86484 0.82974 0.78531 0.79726 1.19656 1.21010 1.20830 1.20752 0.90952 0.97207 0.88496 1.22963 0.91433 1.02421 1.01660 1.23094 0.96996 0.99937 1.02430 1.22874 1.04484 0.99477 0.94565 1.21384 0.79533 1.00388 0.98429 0.92486 0.92642 0.92613 0.91936 0.92124 0.92149 0.92995 0.92789 0.88779 0.91663 0.94686 0.94892 0.92811 0.89412 0.90351 0.87345 0.88693 0.89278 0.89139 0.88845 0.91885 0.89312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.20 37.16 0.34 -0.91 16 2 C -0.11 -1.18 2.53 -90.50 -0.23 -1.41 16 3 H 0.08 0.91 6.50 -51.93 -0.34 0.57 16 4 C -0.10 -1.06 4.70 -26.67 -0.13 -1.19 16 5 C -0.10 -1.23 3.22 -90.48 -0.29 -1.52 16 6 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 7 C -0.15 -1.90 8.57 37.16 0.32 -1.58 16 8 C 0.12 1.82 5.85 -3.72 -0.02 1.80 16 9 N -1.01 -15.74 2.69 -113.52 -0.31 -16.04 16 10 S 2.78 56.01 6.06 -107.50 -0.65 55.36 16 11 O -0.96 -23.06 16.07 -57.17 -0.92 -23.98 16 12 O -1.00 -20.71 15.05 -57.17 -0.86 -21.57 16 13 N -0.99 -20.42 2.83 -115.66 -0.33 -20.75 16 14 C 0.26 6.36 5.09 -5.19 -0.03 6.33 16 15 C -0.52 -14.60 9.38 -34.44 -0.32 -14.93 16 16 H 0.06 1.70 7.81 -52.49 -0.41 1.28 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 19 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.15 2.71 5.95 -4.04 -0.02 2.68 16 24 C -0.16 -2.42 6.00 -90.62 -0.54 -2.96 16 25 C -0.19 -2.27 10.18 -26.69 -0.27 -2.54 16 26 C -0.18 -2.14 10.25 -26.69 -0.27 -2.42 16 27 C 0.13 1.65 5.78 -3.71 -0.02 1.63 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.78 6.19 -51.93 -0.32 0.46 16 36 H 0.09 1.60 7.04 -51.93 -0.37 1.24 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 39 H 0.03 0.85 7.78 -51.93 -0.40 0.45 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.09 1.61 8.12 -51.93 -0.42 1.19 16 42 H 0.08 1.35 6.58 -51.93 -0.34 1.00 16 43 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 44 H 0.09 1.16 8.04 -51.93 -0.42 0.74 16 45 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.09 1.20 6.81 -51.93 -0.35 0.85 16 LS Contribution 394.27 15.07 5.94 5.94 Total: -1.00 -31.66 394.27 -11.84 -43.50 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.85 Total: 1.15 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -1.59 Total: -15.34 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: 0.10 Total: -61.88 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -1.78 Total: -45.55 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 56.01 SS G_CDS: -0.65 Total: 55.36 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.66 -11.84 -43.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078697191.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.717 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds