Wall clock time and date at job start Tue Mar 31 2020 15:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47681 * 2 1 4 4 C 1.52998 * 109.47286 * 240.00218 * 2 1 3 5 5 O 1.45199 * 109.47340 * 120.00206 * 2 1 3 6 6 C 1.34644 * 117.00039 * 59.99554 * 5 2 1 7 7 O 1.21512 * 119.99449 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00073 * 180.02562 * 6 5 2 9 9 C 1.46492 * 120.00195 * 180.02562 * 8 6 5 10 10 H 1.09013 * 110.28456 * 324.32480 * 9 8 6 11 11 C 1.54257 * 110.32759 * 86.44973 * 9 8 6 12 12 C 1.54381 * 105.14978 * 118.84641 * 11 9 8 13 13 N 1.48720 * 104.51692 * 336.27274 * 12 11 9 14 14 C 1.46900 * 111.01831 * 158.96284 * 13 12 11 15 15 C 1.53001 * 109.46857 * 54.49058 * 14 13 12 16 16 C 1.53004 * 109.47407 * 179.97438 * 15 14 13 17 17 S 1.80999 * 109.47185 * 180.02562 * 16 15 14 18 18 C 1.76199 * 99.99833 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99868 * 359.97438 * 18 17 16 20 20 C 1.38794 * 120.00182 * 179.97438 * 18 17 16 21 21 N 1.31630 * 119.99810 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00153 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47344 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47086 * 120.00489 * 22 20 18 25 25 H 1.48503 * 109.46975 * 239.99902 * 22 20 18 26 26 C 1.48567 * 104.28820 * 39.36098 * 13 12 11 27 27 H 1.09007 * 109.47066 * 300.00412 * 1 2 3 28 28 H 1.09001 * 109.46897 * 59.99532 * 1 2 3 29 29 H 1.08991 * 109.47554 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47620 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46679 * 300.00556 * 3 2 1 32 32 H 1.09007 * 109.46527 * 59.99355 * 3 2 1 33 33 H 1.09003 * 109.47097 * 300.00234 * 4 2 1 34 34 H 1.08999 * 109.47601 * 59.99933 * 4 2 1 35 35 H 1.09000 * 109.47720 * 180.02562 * 4 2 1 36 36 H 0.96999 * 119.99921 * 0.02562 * 8 6 5 37 37 H 1.09002 * 110.32715 * 237.79696 * 11 9 8 38 38 H 1.08998 * 110.32251 * 359.90223 * 11 9 8 39 39 H 1.09004 * 110.40867 * 94.98012 * 12 11 9 40 40 H 1.08996 * 110.41187 * 217.42234 * 12 11 9 41 41 H 1.09003 * 109.47294 * 174.49077 * 14 13 12 42 42 H 1.09000 * 109.47223 * 294.49440 * 14 13 12 43 43 H 1.09003 * 109.47184 * 300.00087 * 15 14 13 44 44 H 1.09000 * 109.46892 * 60.00179 * 15 14 13 45 45 H 1.08994 * 109.47102 * 300.00500 * 16 15 14 46 46 H 1.09001 * 109.46563 * 59.99817 * 16 15 14 47 47 H 0.97001 * 120.00026 * 179.97438 * 21 20 18 48 48 H 1.08999 * 110.41133 * 201.79165 * 26 13 12 49 49 H 1.09004 * 110.50861 * 79.40616 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9724 1.3383 7 8 0.9515 -2.5097 0.5035 8 7 2.0671 -2.6655 2.4171 9 6 1.6740 -4.0669 2.5831 10 1 0.6613 -4.2220 2.2104 11 6 2.6638 -4.9921 1.8457 12 6 3.2771 -5.8852 2.9455 13 7 3.1132 -5.0999 4.1978 14 6 3.1780 -5.9715 5.3785 15 6 4.4759 -6.7809 5.3443 16 6 4.5437 -7.6883 6.5743 17 16 6.0796 -8.6453 6.5342 18 6 5.8998 -9.5747 8.0202 19 1 5.0222 -9.4441 8.6360 20 6 6.8860 -10.4747 8.3995 21 7 7.9558 -10.6335 7.6492 22 14 6.6951 -11.4606 9.9746 23 1 5.4130 -11.1007 10.6316 24 1 6.6967 -12.9107 9.6542 25 1 7.8239 -11.1547 10.8899 26 6 1.7700 -4.4785 4.0678 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7216 -1.2491 36 1 2.6262 -2.2364 3.0836 37 1 2.1369 -5.6026 1.1123 38 1 3.4412 -4.4034 1.3587 39 1 2.7354 -6.8285 3.0151 40 1 4.3328 -6.0660 2.7435 41 1 3.1536 -5.3620 6.2819 42 1 2.3258 -6.6511 5.3756 43 1 4.5003 -7.3904 4.4409 44 1 5.3281 -6.1013 5.3472 45 1 4.5195 -7.0785 7.4774 46 1 3.6915 -8.3679 6.5719 47 1 8.6452 -11.2622 7.9144 48 1 1.6928 -3.6020 4.7112 49 1 0.9903 -5.1995 4.3138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120071421.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:11 Heat of formation + Delta-G solvation = -93.386014 kcal Electronic energy + Delta-G solvation = -25748.886237 eV Core-core repulsion = 22029.708895 eV Total energy + Delta-G solvation = -3719.177342 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08003 -39.46226 -37.38985 -35.21407 -34.38196 -32.97711 -32.42830 -30.28502 -28.62591 -27.76590 -27.71559 -25.79112 -25.01559 -23.11941 -22.17709 -20.91157 -20.36199 -20.15184 -18.48755 -17.46057 -17.06638 -16.41353 -16.17075 -15.98193 -15.24620 -14.81410 -14.79889 -14.68194 -14.63435 -14.11487 -13.89070 -13.65470 -13.14659 -12.97310 -12.84023 -12.58768 -12.48025 -12.26491 -12.24303 -12.21534 -12.02188 -11.72755 -11.65447 -11.57221 -11.41063 -11.19282 -11.13210 -11.07649 -10.78362 -10.67385 -10.60363 -10.39048 -10.29053 -9.53522 -9.44662 -9.07078 -8.59187 -8.30301 -6.53162 -6.23359 -3.93523 1.90720 2.60227 3.20477 3.21530 3.29512 3.53107 3.85326 3.90985 4.21440 4.24913 4.36205 4.40645 4.51070 4.54949 4.91385 5.04839 5.10771 5.11430 5.12759 5.18252 5.20649 5.23293 5.32712 5.33130 5.39917 5.42416 5.46835 5.50161 5.50615 5.63182 5.66627 5.69565 5.82015 5.86668 5.88820 5.94056 5.98404 6.07587 6.15674 6.28210 6.31627 6.55717 6.66813 6.75245 6.93035 7.20211 7.60396 8.15292 8.36404 9.23137 10.84895 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.040077 B = 0.001620 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.490009 B =17278.337768 C =17387.912727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.365 6.365 6 C 0.650 3.350 7 O -0.571 6.571 8 N -0.698 5.698 9 C 0.161 3.839 10 H 0.097 0.903 11 C -0.136 4.136 12 C 0.030 3.970 13 N -0.509 5.509 14 C 0.049 3.951 15 C -0.097 4.097 16 C -0.113 4.113 17 S -0.133 6.133 18 C -0.516 4.516 19 H 0.073 0.927 20 C 0.070 3.930 21 N -0.869 5.869 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.023 3.977 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.410 0.590 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.036 0.964 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.267 0.733 48 H 0.089 0.911 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.151 21.797 -15.279 30.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.403 3.597 7 O -0.460 6.460 8 N -0.357 5.357 9 C 0.057 3.943 10 H 0.115 0.885 11 C -0.175 4.175 12 C -0.098 4.098 13 N -0.233 5.233 14 C -0.081 4.081 15 C -0.135 4.135 16 C -0.262 4.262 17 S 0.096 5.904 18 C -0.664 4.664 19 H 0.091 0.909 20 C -0.138 4.138 21 N -0.505 5.505 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.106 4.106 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.245 0.755 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.067 21.889 -16.442 30.779 hybrid contribution -1.424 -1.118 2.127 2.794 sum -15.492 20.771 -14.314 29.603 Atomic orbital electron populations 1.22514 0.94036 1.05051 1.02431 1.22057 0.94307 0.91519 0.82141 1.21866 1.02359 0.92533 1.03087 1.22516 1.01646 1.03516 0.96404 1.86315 1.71533 1.23727 1.46436 1.18114 0.78770 0.80424 0.82355 1.90893 1.41414 1.70557 1.43165 1.44854 1.55190 1.12040 1.23640 1.21682 0.99132 0.78232 0.95265 0.88455 1.22818 0.98855 0.97932 0.97910 1.23204 1.02180 0.95251 0.89126 1.65519 1.26077 1.29269 1.02464 1.22383 0.98072 0.94513 0.93084 1.21322 0.96767 0.97408 0.98023 1.23230 1.03124 1.00531 0.99317 1.84634 1.22130 1.49216 1.34464 1.22735 1.08992 1.26567 1.08130 0.90925 1.25017 0.94559 0.96434 0.97811 1.70033 1.08324 1.34845 1.37313 0.86114 0.78293 0.79380 0.81732 1.19625 1.20583 1.20555 1.23427 0.91762 1.00414 0.94954 0.92217 0.91193 0.89371 0.91392 0.90170 0.91472 0.89340 0.91199 0.92116 0.75454 0.90422 0.90385 0.93181 0.89242 0.90463 0.94546 0.91575 0.90741 0.92088 0.92356 0.92362 0.89243 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.37 37.15 0.31 -1.11 16 2 C 0.14 1.11 1.13 -90.62 -0.10 1.00 16 3 C -0.14 -0.81 8.85 37.16 0.33 -0.48 16 4 C -0.18 -1.48 8.37 37.16 0.31 -1.17 16 5 O -0.37 -3.64 9.94 -40.33 -0.40 -4.04 16 6 C 0.65 6.98 8.05 54.05 0.44 7.41 16 7 O -0.57 -7.19 11.58 -19.28 -0.22 -7.41 16 8 N -0.70 -6.32 5.00 -57.38 -0.29 -6.60 16 9 C 0.16 1.44 3.36 -66.56 -0.22 1.22 16 10 H 0.10 0.91 7.64 -51.92 -0.40 0.51 16 11 C -0.14 -1.30 6.77 -25.35 -0.17 -1.47 16 12 C 0.03 0.32 5.12 -2.09 -0.01 0.31 16 13 N -0.51 -5.60 5.49 -229.82 -1.26 -6.86 16 14 C 0.05 0.61 5.06 -3.82 -0.02 0.59 16 15 C -0.10 -1.53 4.93 -26.73 -0.13 -1.66 16 16 C -0.11 -2.24 5.67 37.16 0.21 -2.03 16 17 S -0.13 -3.46 21.44 -107.50 -2.30 -5.77 16 18 C -0.52 -14.80 9.50 30.94 0.29 -14.51 16 19 H 0.07 2.02 7.80 -52.48 -0.41 1.61 16 20 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 21 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 22 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 26 C 0.02 0.20 6.10 -2.18 -0.01 0.19 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.88 5.88 -51.93 -0.31 0.57 16 30 H 0.07 0.39 8.14 -51.94 -0.42 -0.04 16 31 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.91 5.88 -51.93 -0.31 0.61 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.41 3.26 8.67 -40.82 -0.35 2.91 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.81 7.95 -51.93 -0.41 0.39 16 39 H 0.05 0.54 8.00 -51.93 -0.42 0.12 16 40 H 0.09 1.03 7.68 -51.93 -0.40 0.63 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.04 0.45 7.88 -51.93 -0.41 0.04 16 43 H 0.07 1.05 6.84 -51.93 -0.36 0.70 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 46 H 0.06 1.15 8.14 -51.92 -0.42 0.72 16 47 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.09 0.71 7.99 -51.93 -0.41 0.29 16 49 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 LS Contribution 400.37 15.07 6.03 6.03 Total: -1.00 -32.10 400.37 -10.40 -42.51 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.79 Total: 0.67 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 1.12 Total: -9.77 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: -0.81 Total: -38.73 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -0.62 Total: -11.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -2.30 Total: -5.77 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.10 -10.40 -42.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120071421.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.881 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds